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Keywords

NGS, Genome Assembly, AAV associated NGS data analysis

Countries

Germany, India

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Employment (2)

Universität Heidelberg Bioquant: Heidelberg, Baden-Württemberg, DE

Scientist (Bioinformatics) (Department of Infectious Diseases )
Employment
Source: Self-asserted source
0000-0001-9732-7533

Senckenberg Gesellschaft für Naturforschung: Frankfurt am Main, Hessen, DE

2018-08-14 to 2023-02-28 | Bioinformatician (LOEWE- Center for Translational Biodiversity Genomics)
Employment
Source: Self-asserted source
0000-0001-9732-7533

Education and qualifications (1)

University of Allahabad: Prayagraj, Uttar Pradesh, IN

2003-07-01 to 2005-12-01 | M.Sc. (Institute of Inter-Disciplinary Studies)
Education
Source: Self-asserted source
0000-0001-9732-7533

Works (26)

Prevalent bee venom genes evolved before the aculeate stinger and eusociality

BMC Biology
2023-10-23 | Journal article
DOI: 10.1186/s12915-023-01656-5
Part of ISSN: 1741-7007
Contributors: Ivan Koludarov; Mariana Velasque; Tobias Senoner; Thomas Timm; Carola Greve; Alexander Ben Hamadou; Deepak Kumar Gupta; Günter Lochnit; Michael Heinzinger; Andreas Vilcinskas et al.
Source: Self-asserted source
0000-0001-9732-7533 via Crossref Metadata Search

The genome of the pygmy right whale illuminates the evolution of rorquals

BMC Biology
2023-04-12 | Journal article
DOI: 10.1186/s12915-023-01579-1
Contributors: Magnus Wolf; Konstantin Zapf; Deepak Kumar Gupta; Michael Hiller; Úlfur Árnason; Axel Janke
Source: check_circle
Crossref

Genome sequencing and annotation of Cercospora sesami, a fungal pathogen causing leaf spot to Sesamum indicum

3 Biotech
2023-02 | Journal article
DOI: 10.1007/s13205-023-03468-4
Contributors: Shagun Sinha; Sudhir Navathe; Sakshi Singh; Deepak K. Gupta; Ravindra Nath Kharwar; Ramesh Chand
Source: check_circle
Crossref

Cross‐species analysis between the maize smut fungi Ustilago maydis and Sporisorium reilianum highlights the role of transcriptional change of effector orthologs for virulence and disease

New Phytologist
2021-10 | Journal article
DOI: 10.1111/nph.17625
Contributors: Weiliang Zuo; Jasper R. L. Depotter; Deepak K. Gupta; Marco Thines; Gunther Doehlemann
Source: check_circle
Crossref

Bioacoustics Reveal Hidden Diversity in Frogs: Two New Species of the Genus Limnonectes from Myanmar (Amphibia, Anura, Dicroglossidae)

Diversity
2021-08-24 | Journal article
DOI: 10.3390/d13090399
Part of ISSN: 1424-2818
Source: Self-asserted source
0000-0001-9732-7533

Comparative transcriptome profiling identifies maize line specificity of fungal effectors in the maize– Ustilago maydis interaction

The Plant Journal
2021-05 | Journal article
DOI: 10.1111/tpj.15195
Part of ISSN: 0960-7412
Part of ISSN: 1365-313X
Source: Self-asserted source
0000-0001-9732-7533

A chromosome-level genome assembly of the European Beech (Fagus sylvatica) reveals anomalies for organelle DNA integration, repeat content and distribution of SNPs

[]
2021-03-22 | Preprint
DOI: 10.1101/2021.03.22.436437
Source: Self-asserted source
0000-0001-9732-7533

In silico screening and molecular dynamics of phytochemicals from Indian cuisine against SARS-CoV-2 MPro

Journal of Biomolecular Structure and Dynamics
2020-11-17 | Journal article
DOI: 10.1080/07391102.2020.1845980
Part of ISSN: 0739-1102
Part of ISSN: 1538-0254
Source: Self-asserted source
0000-0001-9732-7533

Cross-species analysis between the maize smut fungi Ustilago maydis and Sporisorium reilianum highlights the role of transcriptional plasticity of effector orthologs for virulence and disease

[]
2020-11-04 | Preprint
DOI: 10.1101/2020.11.03.366443
Source: Self-asserted source
0000-0001-9732-7533
grade
Preferred source (of 2)‎

The Genome of Microthlaspi erraticum (Brassicaceae) Provides Insights Into the Adaptation to Highly Calcareous Soils

Frontiers in Plant Science
2020-07-03 | Journal article
DOI: 10.3389/fpls.2020.00943
Part of ISSN: 1664-462X
Source: Self-asserted source
0000-0001-9732-7533

Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master’s Course

G3 Genes|Genomes|Genetics
2020-07-01 | Journal article
DOI: 10.1534/g3.120.401205
Part of ISSN: 2160-1836
Source: Self-asserted source
0000-0001-9732-7533
grade
Preferred source (of 2)‎

Education in the genomics era: Generating high-quality genome assemblies in university courses

GigaScience
2020-06-01 | Journal article
DOI: 10.1093/gigascience/giaa058
Part of ISSN: 2047-217X
Source: Self-asserted source
0000-0001-9732-7533

Annotated Draft Genomes of Two Caddisfly Species Plectrocnemia conspersa CURTIS and Hydropsyche tenuis NAVAS (Insecta: Trichoptera)

Genome Biology and Evolution
2019-12-01 | Journal article
DOI: 10.1093/gbe/evz264
Part of ISSN: 1759-6653
Source: Self-asserted source
0000-0001-9732-7533

The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes

BMC Genomics
2018-12 | Journal article
DOI: 10.1186/s12864-017-4430-y
Part of ISSN: 1471-2164
Source: Self-asserted source
0000-0001-9732-7533

A reference genome of the European beech (Fagus sylvatica L.)

GigaScience
2018-06-01 | Journal article
DOI: 10.1093/gigascience/giy063
Part of ISSN: 2047-217X
Source: Self-asserted source
0000-0001-9732-7533

Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle

BMC Genomics
2016-12 | Journal article
DOI: 10.1186/s12864-016-2862-4
Part of ISSN: 1471-2164
Source: Self-asserted source
0000-0001-9732-7533

Draft Genome of the Wheat Rust Pathogen (Puccinia triticina)Unravels Genome-Wide Structural Variations during Evolution

Genome Biology and Evolution
2016-09 | Journal article
DOI: 10.1093/gbe/evw197
Part of ISSN: 1759-6653
Source: Self-asserted source
0000-0001-9732-7533

Analysis of Magnaporthe oryzae Genome Reveals a Fungal Effector, Which Is Able to Induce Resistance Response in Transgenic Rice Line Containing Resistance Gene, Pi54

Frontiers in Plant Science
2016-08-08 | Journal article
DOI: 10.3389/fpls.2016.01140
Part of ISSN: 1664-462X
Source: Self-asserted source
0000-0001-9732-7533

A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms

Molecular Plant
2012-09 | Journal article
DOI: 10.1093/mp/ssr111
Part of ISSN: 1674-2052
Source: Self-asserted source
0000-0001-9732-7533

The first draft of the pigeonpea genome sequence

Journal of Plant Biochemistry and Biotechnology
2012-01 | Journal article
DOI: 10.1007/s13562-011-0088-8
Part of ISSN: 0971-7811
Part of ISSN: 0974-1275
Source: Self-asserted source
0000-0001-9732-7533

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

BMC Plant Biology
2011-12 | Journal article
DOI: 10.1186/1471-2229-11-17
Part of ISSN: 1471-2229
Source: Self-asserted source
0000-0001-9732-7533

Genome-Wide Distribution and Organization of Microsatellites in Plants: An Insight into Marker Development in Brachypodium

PLoS ONE
2011-06-21 | Journal article
DOI: 10.1371/journal.pone.0021298
Part of ISSN: 1932-6203
Source: Self-asserted source
0000-0001-9732-7533

Genomic resources in horticultural crops: Status, utility and challenges

Biotechnology Advances
2011-03 | Journal article
DOI: 10.1016/j.biotechadv.2010.11.002
Part of ISSN: 0734-9750
Source: Self-asserted source
0000-0001-9732-7533

Metabolic modeling of Rosmarinic acid biosynthetic pathway

Bioinformation
2010-09-20 | Journal article
DOI: 10.6026/97320630005168
Part of ISSN: 0973-8894
Part of ISSN: 0973-2063
Source: Self-asserted source
0000-0001-9732-7533

SNP haplotypes of the BADH1 gene and their association with aroma in rice (Oryza sativa L.)

Molecular Breeding
2010-08 | Journal article
DOI: 10.1007/s11032-010-9425-1
Part of ISSN: 1380-3743
Part of ISSN: 1572-9788
Source: Self-asserted source
0000-0001-9732-7533

A common venomous ancestor? Prevalent bee venom genes evolved before the aculeate stinger while few major toxins are bee-specific

Other
DOI: 10.1101/2022.01.21.477203
Contributors: Ivan Koludarov; Mariana Velasque; Thomas Timm; Carola Greve; Alexander Ben Hamadou; Deepak Kumar Gupta; Günter Lochnit; Michael Heinzinger; Andreas Vilcinskas; Rosalyn Gloag et al.
Source: Self-asserted source
0000-0001-9732-7533 via Crossref Metadata Search
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