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Stockholms Universitet: Stockholm, SE

2012-07-01 to present | Professor (Biochemistry and Biophysics)
Employment
Source: Self-asserted source
Mats Nilsson

Education and qualifications (1)

Uppsala Universitet: Uppsala, SE

1993-09-01 to 1998-05-08 | PhD (Medical Genetics)
Education
Source: Self-asserted source
Mats Nilsson

Works (39)

A systematic implementation of padlock probing-based rolling circle amplification in an integrated microfluidic device for quantitative biomolecular analyses

Analytica Chimica Acta
2025-05 | Journal article
DOI: 10.1016/j.aca.2025.343834
Contributors: Catarina R.F. Caneira; Rafaela R. Rosa; Virginia Chu; Mats Nilsson; Narayanan Madaboosi; Ruben R.G. Soares; João P. Conde
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Crossref

Spatial miRNomics: towards the integration of microRNAs in spatial biology

Nature Reviews Genetics
2025-02-06 | Journal article
DOI: 10.1038/s41576-025-00819-0
Contributors: Agustín Robles-Remacho; Mats Nilsson
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Crossref

Oligodendroglia vulnerability in the human dorsal striatum in Parkinson’s disease

2025-01-20 | Preprint
DOI: 10.1101/2025.01.15.633167
Contributors: Juan M. Barba-Reyes; Lisbeth Harder; Sergio Marco Salas; Methasit Jaisa-aad; Clara Muñoz-Castro; Nima Rafati; Mats Nilsson; Bradley T. Hyman; Alberto Serrano-Pozo; Ana B. Muñoz-Manchado
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Data from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.c.7474419
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by In Situ Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

Clinical Cancer Research
2024-10-01 | Journal article
DOI: 10.1158/1078-0432.CCR-23-3461
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Supplementary Figure S1 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142188
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Figure S2 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142182
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Figure S3 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142179
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Figure S4 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142176
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Figure S5 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142173
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Figure S6 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142170
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Figure S7 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142167
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Figure S8 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142164
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Table S1 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142161
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Table S2 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142158
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Table S3 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142155
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Supplementary Table S4 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

2024-10-01 | Preprint
DOI: 10.1158/1078-0432.27142152
Contributors: Axel Andersson; Maria Escriva Conde; Olga Surova; Peter Vermeulen; Carolina Wählby; Mats Nilsson; Hanna Nyström
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Crossref

Spatial multimodal analysis of transcriptomes and metabolomes in tissues

Nature Biotechnology
2024-07 | Journal article
DOI: 10.1038/s41587-023-01937-y
Contributors: Marco Vicari; Reza Mirzazadeh; Anna Nilsson; Reza Shariatgorji; Patrik Bjärterot; Ludvig Larsson; Hower Lee; Mats Nilsson; Julia Foyer; Markus Ekvall et al.
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Interneuron diversity in the human dorsal striatum

Nature Communications
2024-07-22 | Journal article
DOI: 10.1038/s41467-024-50414-w
Contributors: Leonardo D. Garma; Lisbeth Harder; Juan M. Barba-Reyes; Sergio Marco Salas; Mónica Díez-Salguero; Mats Nilsson; Alberto Serrano-Pozo; Bradley T. Hyman; Ana B. Muñoz-Manchado
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Tactile Tourism

Tourism
2023-07-04 | Journal article
DOI: 10.37741/t.71.3.8
Contributors: Mats Nilsson; Thomas Blom
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Spatial Multimodal Analysis of Transcriptomes and Metabolomes in Tissues

2023-01-27 | Preprint
DOI: 10.1101/2023.01.26.525195
Contributors: Marco Vicari; Reza Mirzazadeh; Anna Nilsson; Reza Shariatgorji; Patrik Bjärterot; Ludvig Larsson; Hower Lee; Mats Nilsson; Julia Foyer; Markus Ekvall et al.
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De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks

PLOS Computational Biology
2022-08-12 | Journal article
DOI: 10.1371/journal.pcbi.1010366
Contributors: Sergio Marco Salas; Qing Nie; Xiao Yuan; Christer Sylven; Mats Nilsson; Carolina Wählby; Gabriele Partel
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Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps

BMC Bioinformatics
2021-12 | Journal article
DOI: 10.1186/s12859-021-04302-5
Contributors: Sergio Marco Salas; Daniel Gyllborg; Christoffer Mattsson Langseth; Mats Nilsson
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Rolling Circle Amplification in Integrated Microsystems: An Uncut Gem toward Massively Multiplexed Pathogen Diagnostics and Genotyping

Accounts of Chemical Research
2021-11-02 | Journal article
DOI: 10.1021/acs.accounts.1c00438
Contributors: Ruben R. G. Soares; Narayanan Madaboosi; Mats Nilsson
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Correction to ‘Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue’

Nucleic Acids Research
2021-09-07 | Journal article
DOI: 10.1093/nar/gkab630
Contributors: Daniel Gyllborg; Christoffer Mattsson Langseth; Xiaoyan Qian; Eunkyoung Choi; Sergio Marco Salas; Markus M Hilscher; Ed S Lein; Mats Nilsson
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Developmental landscape of human forebrain at a single-cell level unveils early waves of oligodendrogenesis

2021-07-22 | Other
DOI: 10.1101/2021.07.22.453317
Contributors: David van Bruggen; Fabio Pohl; Christoffer Mattsson Langseth; Petra Kukanja; Hower Lee; Mukund Kabbe; Mandy Meijer; Markus M. Hilscher; Mats Nilsson; Erik Sundström et al.
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Crossref

De novo spatiotemporal modelling of cell-type signatures identifies novel cell populations in the developmental human heart

2021-07-11 | Other
DOI: 10.1101/2021.07.10.451822
Contributors: Sergio Marco Salas; Xiao Yuan; Christer Sylven; Mats Nilsson; Carolina Wählby; Gabriele Partel
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Comprehensive in situ mapping of human cortical transcriptomic cell types

2021-01-28 | Preprint
DOI: 10.1101/2021.01.28.428548
Contributors: Christoffer Mattsson Langseth; Daniel Gyllborg; Jeremy A. Miller; Jennie L. Close; Brian Long; Ed S. Lein; Markus M. Hilscher; Mats Nilsson
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Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue

Nucleic Acids Research
2020-11-04 | Journal article
DOI: 10.1093/nar/gkaa792
Contributors: Daniel Gyllborg; Christoffer Mattsson Langseth; Xiaoyan Qian; Eunkyoung Choi; Sergio Marco Salas; Markus M Hilscher; Ed S Lein; Mats Nilsson
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Real‐time analysis of switchable nanocomposites of magnesium pyrophosphates and rolling circle amplification products

ChemNanoMat
2020-08 | Journal article
DOI: 10.1002/cnma.202000135
Contributors: Gabriel Antonio S. Minero; Jeppe Fock; Bo Tian; Giovanni Rizzi; Felix Neumann; Narayanan Madaboosi; Mats Nilsson; Mikkel Fougt Hansen
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Molecular architecture of the developing mouse brain

2020-07-03 | Preprint
DOI: 10.1101/2020.07.02.184051
Contributors: Gioele La Manno; Kimberly Siletti; Alessandro Furlan; Daniel Gyllborg; Elin Vinsland; Christoffer Mattsson Langseth; Irina Khven; Anna Johnsson; Mats Nilsson; Peter Lönnerberg et al.
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SCRINSHOT, a spatial method for single-cell resolution mapping of cell states in tissue sections

2020-02-07 | Preprint
DOI: 10.1101/2020.02.07.938571
Contributors: Alexandros Sountoulidis; Andreas Liontos; Hong Phuong Nguyen; Alexandra B. Firsova; Athanasios Fysikopoulos; Xiaoyan Qian; Werner Seeger; Erik Sundström; Mats Nilsson; Christos Samakovlis
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Probabilistic cell typing enables fine mapping of closely related cell types in situ

Nature Methods
2020-01 | Journal article
DOI: 10.1038/s41592-019-0631-4
Contributors: Xiaoyan Qian; Kenneth D. Harris; Thomas Hauling; Dimitris Nicoloutsopoulos; Ana B. Muñoz-Manchado; Nathan Skene; Jens Hjerling-Leffler; Mats Nilsson
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Identification of spatial compartments in tissue from in situ sequencing data

2019-09-18 | Other
DOI: 10.1101/765842
Contributors: Gabriele Partel; Markus M. Hilscher; Giorgia Milli; Leslie Solorzano; Anna H. Klemm; Mats Nilsson; Carolina Wählby
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Smartphone‐based clinical diagnostics: towards democratization of evidence‐based health care

Journal of Internal Medicine
2019-01 | Journal article
DOI: 10.1111/joim.12820
Contributors: I. Hernández‐Neuta; F. Neumann; J. Brightmeyer; T. Ba Tis; N. Madaboosi; Q. Wei; A. Ozcan; M. Nilsson
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Rolling Circle Amplification with Padlock Probes for In Situ Detection of RNA Analytes

Rolling Circle Amplification (RCA)
2016 | Other
DOI: 10.1007/978-3-319-42226-8_9
Part of ISBN: 9783319422244
Contributors: Anja Mezger; Malte Kühnemund; Mats Nilsson
Source: Self-asserted source
Mats Nilsson via Crossref Metadata Search

In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification

Genotyping
2016-11-08 | Other
DOI: 10.1007/978-1-4939-6442-0_4
Part of ISBN: 9781493964406
Part of ISSN: 1064-3745
Contributors: Tomasz Krzywkowski; Thomas Hauling; Mats Nilsson
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Mats Nilsson via Crossref Metadata Search

Padlock probes reveal single-nucleotide differences, parent of origin and in situ distribution of centromeric sequences in human chromosomes 13 and 21

Nature Genetics
1997-07 | Journal article
DOI: 10.1038/ng0797-252
Part of ISSN: 1061-4036
Contributors: Mats Nilsson; Katerina Krejci; Jørn Koch; Marek Kwiatkowski; Peter Gustavsson; Ulf Landegren
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Mats Nilsson via Crossref Metadata Search

Padlock probes: circularizing oligonucleotides for localized DNA detection

Science
1994-09 | Journal article
DOI: 10.1126/science.7522346
Part of ISSN: 0036-8075
Contributors: M Nilsson; H Malmgren; M Samiotaki; M Kwiatkowski; B. Chowdhary; U Landegren
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Mats Nilsson via Crossref Metadata Search

Peer review (12 reviews for 7 publications/grants)

Review activity for Analytical chemistry. (1)
Review activity for Cell systems. (1)
Review activity for Nature (3)
Review activity for Nature biotechnology. (2)
Review activity for Nature communications (3)
Review activity for Nature reviews. (1)
Review activity for PloS one. (1)
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