Cajo J. F. ter Braak

0000-0002-0414-8745

Country: NL

Keywords: Statistical ecology - Bayesian computing

Websites:
http://scholar.google.nl/citations?user=dkqwZxkAAAAJ&hl=en
http://www.canoco.com
http://www.wageningenur.nl/en/Persons.htm?dbid=5481&typeofpage=400320&from=0

Other IDs:
Scopus Author ID: 35551536200

Personal Information

Biography
Cajo J.F. ter Braak (1954) has studied Biology with second major Mathematics (1977, Utrecht University, the Netherlands) and Statistics (1980, MSc by research, University of Newcastle upon Tyne , England). He holds a PhD degree from Wageningen University (1987, thesis “Unimodal models to relate species to environment”). His main research contributions have been in the field of statistical ecology and, after 2001, also in the field of statistical genetics and Bayesian analysis and computation. He received the Distinguished Statistical Ecologist award at INTECOL 1998 and is ISI Highly Cited in the field of Ecology/Environment. He is the senior author of Canoco. Currently he is professor of Multivariate Analysis in the Life Sciences at Biometris (Applied Mathematics and Applied Statistics Centre), Wageningen University and Research Centre, the Netherlands.

Publications

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    Arctic warming on two continents has consistent negative effects on lichen diversity and mixed effects on bryophyte diversity: Global Change Biology 2012

    Lang, S.I. and Cornelissen, J.H.C. and Shaver, G.R. and Ahrens, M. and Callaghan, T.V. and Molau, U. and Ter Braak, C.J.F. and Hölzer, A. and Aerts, R., (2012). "Arctic warming on two continents has consistent negative effects on lichen diversity and mixed effects on bryophyte diversity", Global Change Biology, vol. 18, no. 3, pp. 1096-1107
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    Hydrologic data assimilation using particle Markov chain Monte Carlo simulation: Theory, concepts and applications: Advances in Water Resources 2012

    Vrugt, J.A. and ter Braak, C.J.F. and Diks, C.G.H. and Schoups, G., (2012). "Hydrologic data assimilation using particle Markov chain Monte Carlo simulation: Theory, concepts and applications", Advances in Water Resources
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    Improved testing of species traits-environment relationships in the fourth-corner problem: Ecology 2012

    Braak, C.J.F.T. and Cormont, A. and Dray, S.P., (2012). "Improved testing of species traits-environment relationships in the fourth-corner problem", Ecology, vol. 93, no. 7, pp. 1525-1526
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    QTL linkage analysis of connected populations using ancestral marker and pedigree information: Theoretical and Applied Genetics 2012

    Bink, M.C.A.M. and Totir, L.R. and ter Braak, C.J.F. and Winkler, C.R. and Boer, M.P. and Smith, O.S., (2012). "QTL linkage analysis of connected populations using ancestral marker and pedigree information", Theoretical and Applied Genetics, vol. 124, no. 6, pp. 1097-1113
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    Response to : Ecotoxicology (London, England) 2012

    Van den Brink, P.J. and Ter Braak, C.J., (2012). "Response to "Traits and stress: keys to identify community effects of low levels of toxicants in test systems" by Liess and Beketov (2011).", Ecotoxicology (London, England), vol. 21, no. 2
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    Selection properties of type II maximum likelihood (empirical Bayes) in linear models with individual variance components for predictors: Pattern Recognition Letters 2012

    Jamil, T. and Ter Braak, C.J.F., (2012). "Selection properties of type II maximum likelihood (empirical Bayes) in linear models with individual variance components for predictors", Pattern Recognition Letters, vol. 33, no. 9, pp. 1205-1212
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    Trait-environment relationships and tiered forward model selection in linear mixed models: International Journal of Ecology 2012

    Jamil, T. and Opdekamp, W. and Van Diggelen, R. and Ter Braak, C.J.F., (2012). "Trait-environment relationships and tiered forward model selection in linear mixed models", International Journal of Ecology
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    Correlated mutations via regularized multinomial regression: BMC Bioinformatics 2011

    Sreekumar, J. and ter Braak, C.J.F. and van Ham, R.C.H.J. and van Dijk, A.D.J., (2011). "Correlated mutations via regularized multinomial regression", BMC Bioinformatics, vol. 12
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    DREAM(D): An adaptive Markov Chain Monte Carlo simulation algorithm to solve discrete, noncontinuous, and combinatorial posterior parameter estimation problems: Hydrology and Earth System Sciences 2011

    Vrugt, J.A. and Ter Braak, C.J.F., (2011). "DREAM(D): An adaptive Markov Chain Monte Carlo simulation algorithm to solve discrete, noncontinuous, and combinatorial posterior parameter estimation problems", Hydrology and Earth System Sciences, vol. 15, no. 12, pp. 3701-3713
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    Genome-wide computational function prediction of arabidopsis proteins by integration of multiple data sources: Plant Physiology 2011

    Kourmpetis, Y.A.I. and van Dijk, A.D.J. and van Ham, R.C.H.J. and ter Braak, C.J.F., (2011). "Genome-wide computational function prediction of arabidopsis proteins by integration of multiple data sources", Plant Physiology, vol. 155, no. 1, pp. 271-281
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    Testing the significance of canonical axes in redundancy analysis: Methods in Ecology and Evolution 2011

    Legendre, P. and Oksanen, J. and ter Braak, C.J.F., (2011). "Testing the significance of canonical axes in redundancy analysis", Methods in Ecology and Evolution, vol. 2, no. 3, pp. 269-277
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    The predictability of phytophagous insect communities: Host specialists as habitat specialists: PLoS ONE 2011

    Müller, J. and Stadler, J. and Jarzabek-Müller, A. and Hacker, H. and ter Braak, C. and Brandl, R., (2011). "The predictability of phytophagous insect communities: Host specialists as habitat specialists", PLoS ONE, vol. 6, no. 10
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    Using life-history traits to explain bird population responses to changing weather variability: Climate Research 2011

    Cormont, A. and Vos, C.C. and Van Turnhout, C.A.M. and Foppen, R.P.B. and Ter Braak, C.J.F., (2011). "Using life-history traits to explain bird population responses to changing weather variability", Climate Research, vol. 49, no. 1, pp. 59-71
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    Bayesian markov random field analysis for protein function prediction based on network data: PLoS ONE 2010

    Kourmpetis, Y.A.I. and Van Dijk, A.D.J. and Bink, M.C.A.M. and Van Ham, R.C.H.J. and Ter Braak, C.J.F., (2010). "Bayesian markov random field analysis for protein function prediction based on network data", PLoS ONE, vol. 5, no. 2
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    Gene regulatory networks from multifactorial perturbations using graphical lasso: Application to the DREAM4 challenge: PLoS ONE 2010

    Menéndez, P. and Kourmpetis, Y.A.I. and ter Braak, C.J.F. and van Eeuwijk, F.A., (2010). "Gene regulatory networks from multifactorial perturbations using graphical lasso: Application to the DREAM4 challenge", PLoS ONE, vol. 5, no. 12
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    Identity-by-descent matrix decomposition using latent ancestral allele models: Genetics 2010

    Ter Braak, C.J.F. and Boer, M.P. and Totir, L.R. and Winkler, C.R. and Smith, O.S. and Bink, M.C.A.M., (2010). "Identity-by-descent matrix decomposition using latent ancestral allele models", Genetics, vol. 185, no. 3, pp. 1045-1057
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    Iteratio: Calculating environmental indicator values for species and relevés: Applied Vegetation Science 2010

    Holtland, W.J. and Ter Braak, C.J.F. and Schouten, M.G.C., (2010). "Iteratio: Calculating environmental indicator values for species and relevés", Applied Vegetation Science, vol. 13, no. 3, pp. 369-377
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    Mixed model approaches for the identification of QTLs within a maize hybrid breeding program: Theoretical and Applied Genetics 2010

    van Eeuwijk, F.A. and Boer, M. and Totir, L.R. and Bink, M. and Wright, D. and Winkler, C.R. and Podlich, D. and Boldman, K. and Baumgarten, A. and Smalley, M. and Arbelbide, M. and ter Braak, C.J.F. and Cooper, M., (2010). "Mixed model approaches for the identification of QTLs within a maize hybrid breeding program", Theoretical and Applied Genetics, vol. 120, no. 2, pp. 429-440
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    Accelerating Markov chain Monte Carlo simulation by differential evolution with self-adaptive randomized subspace sampling: International Journal of Nonlinear Sciences and Numerical Simulation 2009

    Vrugt, J.A. and Ter Braak, C.J.F. and Diks, C.G.H. and Robinson, B.A. and Hyman, J.M. and Higdon, D., (2009). "Accelerating Markov chain Monte Carlo simulation by differential evolution with self-adaptive randomized subspace sampling", International Journal of Nonlinear Sciences and Numerical Simulation, vol. 10, no. 3, pp. 273-290
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    Agro-ecological indicators (AEIs) for dairy and mixed farming systems classification: Identifying alternatives for the cuban livestock sector: Journal of Sustainable Agriculture 2009

    Funes-Monzote, F.R. and Monzote, M. and Lantinga, E.A. and Ter Braak, C.J.F. and Sanchez, J.E. and Van Keulen, H., (2009). "Agro-ecological indicators (AEIs) for dairy and mixed farming systems classification: Identifying alternatives for the cuban livestock sector", Journal of Sustainable Agriculture, vol. 33, no. 4, pp. 435-460
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    Approximating a similarity matrix by a latent class model: A reappraisal of additive fuzzy clustering: Computational Statistics and Data Analysis 2009

    ter Braak, C.J.F. and Kourmpetis, Y. and Kiers, H.A.L. and Bink, M.C.A.M., (2009). "Approximating a similarity matrix by a latent class model: A reappraisal of additive fuzzy clustering", Computational Statistics and Data Analysis, vol. 53, no. 8, pp. 3183-3193
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    Determinants of cryptogam composition and diversity in Sphagnum-dominated peatlands: The importance of temporal, spatial and functional scales: Journal of Ecology 2009

    Lang, S.I. and Cornelissen, J.H.C. and Hölzer, A. and Ter Braak, C.J.F. and Ahrens, M. and Callaghan, T.V. and Aerts, R., (2009). "Determinants of cryptogam composition and diversity in Sphagnum-dominated peatlands: The importance of temporal, spatial and functional scales", Journal of Ecology, vol. 97, no. 2, pp. 299-310
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    Equifinality of formal (DREAM) and informal (GLUE) Bayesian approaches in hydrologic modeling?: Stochastic Environmental Research and Risk Assessment 2009

    Vrugt, J.A. and ter Braak, C.J.F. and Gupta, H.V. and Robinson, B.A., (2009). "Equifinality of formal (DREAM) and informal (GLUE) Bayesian approaches in hydrologic modeling?", Stochastic Environmental Research and Risk Assessment, vol. 23, no. 7, pp. 1011-1026
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    Principal response curves technique for the analysis of multivariate biomonitoring time series: Environmental Monitoring and Assessment 2009

    van den Brink, P.J. and den Besten, P.J. and bij de Vaate, A. and ter Braak, C.J.F., (2009). "Principal response curves technique for the analysis of multivariate biomonitoring time series", Environmental Monitoring and Assessment, vol. 152, no. 1-4, pp. 271-281
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    Regression by L1 regularization of smart contrasts and sums (ROSCAS) beats PLS and elastic net in latent variable model: Journal of Chemometrics 2009

    Braak, C.J.F.T., (2009). "Regression by L1 regularization of smart contrasts and sums (ROSCAS) beats PLS and elastic net in latent variable model", Journal of Chemometrics, vol. 23, no. 5, pp. 217-228
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    Response to comment by Keith Beven on : Stochastic Environmental Research and Risk Assessment 2009

    Vrugt, J.A. and ter Braak, C.J.F. and Gupta, H.V. and Robinson, B.A., (2009). "Response to comment by Keith Beven on "Equifinality of formal (DREAM) and informal (GLUE) Bayesian approaches in hydrologic modeling?"", Stochastic Environmental Research and Risk Assessment, vol. 23, no. 7, pp. 1061-1062
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    Statistical aspects of environmental risk assessment of GM plants for effects on non-target organisms: Environmental Biosafety Research 2009

    Perry, J.N. and Braak, C.J.F.T. and Dixon, P.M. and Duan, J.J. and Hails, R.S. and Huesken, A. and Lavielle, M. and Marvier, M. and Scardi, M. and Schmidt, K. and Tothmeresz, B. and Schaarschmidt, F. and Voet, H.V.D., (2009). "Statistical aspects of environmental risk assessment of GM plants for effects on non-target organisms", Environmental Biosafety Research, vol. 8, no. 2, pp. 65-78
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    Arthropod assemblages are best predicted by plant species composition: Ecology 2008

    Schaffers, A.P. and Raemakers, I.P. and Sýkora, K.V. and Ter Braak, C.J.F., (2008). "Arthropod assemblages are best predicted by plant species composition", Ecology, vol. 89, no. 3, pp. 782-794
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    Bayesian analysis of complex traits in pedigreed plant populations: Euphytica 2008

    Bink, M.C.A.M. and Boer, M.P. and Ter Braak, C.J.F. and Jansen, J. and Voorrips, R.E. and Van De Weg, W.E., (2008). "Bayesian analysis of complex traits in pedigreed plant populations", Euphytica, vol. 161, no. 1-2, pp. 85-96
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    Bootstrap confidence intervals for principal response curves: Computational Statistics and Data Analysis 2008

    Timmerman, M.E. and Ter Braak, C.J.F., (2008). "Bootstrap confidence intervals for principal response curves", Computational Statistics and Data Analysis, vol. 52, no. 4, pp. 1837-1849
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    Comparing sampling patterns for kriging the spatial mean temporal trend: Journal of Agricultural, Biological, and Environmental Statistics 2008

    ter Braak, C.J.F. and Brus, D.J. and Pebesma, E.J., (2008). "Comparing sampling patterns for kriging the spatial mean temporal trend", Journal of Agricultural, Biological, and Environmental Statistics, vol. 13, no. 2, pp. 159-176
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    Differential Evolution Markov Chain with snooker updater and fewer chains: Statistics and Computing 2008

    Ter Braak, C.J.F. and Vrugt, J.A., (2008). "Differential Evolution Markov Chain with snooker updater and fewer chains", Statistics and Computing, vol. 18, no. 4, pp. 435-446
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    Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control: Bioinformatics 2008

    Van dijk, A.D.J. and Ter braak, C.J.F. and Immink, R.G. and Angenent, G.C. and Van ham, R.C.H.J., (2008). "Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control", Bioinformatics, vol. 24, no. 1, pp. 26-33
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    Predicting sub-Golgi localization of type II membrane proteins: Bioinformatics 2008

    van Dijk, A.D.J. and Bosch, D. and ter Braak, C.J.F. and van der Krol, A.R. and van Ham, R.C.H.J., (2008). "Predicting sub-Golgi localization of type II membrane proteins", Bioinformatics, vol. 24, no. 16, pp. 1779-1786
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    Attractiveness of MM-X traps baited with human or synthetic odor to mosquitoes (Diptera: Culicidae) in the Gambia: Journal of Medical Entomology 2007

    Qiu, Y.T. and Smallegange, R.C. and Ter Braak, C.J.F. and Spitzen, J. and Van Loon, J.J.A. and Jawara, M. and Milligan, P. and Galimard, A.M. and Van Beek, T.A. and Knols, B.G.J. and Takken, W., (2007). "Attractiveness of MM-X traps baited with human or synthetic odor to mosquitoes (Diptera: Culicidae) in the Gambia", Journal of Medical Entomology, vol. 44, no. 6, pp. 970-983
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    The use of multiple hierarchically independent gene ontology terms in gene function prediction and genome annotation: In Silico Biology 2007

    Kourmpetis, Y.A.I. and van der Burgt, A. and Bink, M.C.A.M. and ter Braak, C.J.F. and van Ham, R.C.H.J., (2007). "The use of multiple hierarchically independent gene ontology terms in gene function prediction and genome annotation", In Silico Biology, vol. 7, no. 6, pp. 575-582
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    A Markov Chain Monte Carlo version of the genetic algorithm Differential Evolution: Easy Bayesian computing for real parameter spaces: Statistics and Computing 2006

    Ter Braak, C.J.F., (2006). "A Markov Chain Monte Carlo version of the genetic algorithm Differential Evolution: Easy Bayesian computing for real parameter spaces", Statistics and Computing, vol. 16, no. 3, pp. 239-249
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    Bayesian sigmoid shrinkage with improper variance priors and an application to wavelet denoising: Computational Statistics and Data Analysis 2006

    ter Braak, C.J.F., (2006). "Bayesian sigmoid shrinkage with improper variance priors and an application to wavelet denoising", Computational Statistics and Data Analysis, vol. 51, no. 2, pp. 1232-1242
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    Interindividual variation in the attractiveness of human odours to the malaria mosquito Anopheles gambiae s. s.: Medical and Veterinary Entomology 2006

    Qiu, Y.T. and Smallegange, R.C. and Van Loon, J.J.A. and Ter Braak, C.J.F. and Takken, W., (2006). "Interindividual variation in the attractiveness of human odours to the malaria mosquito Anopheles gambiae s. s.", Medical and Veterinary Entomology, vol. 20, no. 3, pp. 280-287
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    Extending Xu's Bayesian model for estimating polygenic effects using markers of the entire genome: Genetics 2005

    Ter Braak, C.J.F. and Boer, M.P. and Bink, M.C.A.M., (2005). "Extending Xu's Bayesian model for estimating polygenic effects using markers of the entire genome", Genetics, vol. 170, no. 3, pp. 1435-1438
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    Risk assessment of dietary exposure to pesticides using a Bayesian method: Pest Management Science 2005

    Paulo, M.J. and Van Der Voet, H. and Jansen, M.J.W. and Ter Braak, C.J.F. and Van Klaveren, J.D., (2005). "Risk assessment of dietary exposure to pesticides using a Bayesian method", Pest Management Science, vol. 61, no. 8, pp. 759-766
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    A Theory of Gradient Analysis: Advances in Ecological Research 2004

    TER BRAAK, C.J.F. and PRENTICE, I.C., (2004). "A Theory of Gradient Analysis", Advances in Ecological Research, vol. 34, pp. 235-282
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    Co-correspondence analysis: A new ordination method to relate two community compositions: Ecology 2004

    Ter Braak, C.J.F. and Schaffers, A.P., (2004). "Co-correspondence analysis: A new ordination method to relate two community compositions", Ecology, vol. 85, no. 3, pp. 834-846
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    Bayesian model-based cluster analysis for predicting macrofaunal communities: Ecological Modelling 2003

    Ter Braak, C.J.F. and Hoijtink, H. and Akkermans, W. and Verdonschot, P.F.M., (2003). "Bayesian model-based cluster analysis for predicting macrofaunal communities", Ecological Modelling, vol. 160, no. 3, pp. 235-248
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    Changes in large-scale patterns of plant biodiversity predicted from environmental economic scenarios: Landscape Ecology 2003

    Wamelink, G.W.W. and Ter Braak, C.J.F. and Van Dobben, H.F., (2003). "Changes in large-scale patterns of plant biodiversity predicted from environmental economic scenarios", Landscape Ecology, vol. 18, no. 5, pp. 513-527
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    Improved Bayesian analysis of metapopulation data with an application to a tree frog metapopulation: Ecology 2003

    Ter Braak, C.J.F. and Etienne, R.S., (2003). "Improved Bayesian analysis of metapopulation data with an application to a tree frog metapopulation", Ecology, vol. 84, no. 1, pp. 231-241
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    Permutation tests for multi-factorial analysis of variance: Journal of Statistical Computation and Simulation 2003

    Anderson, M.J. and Ter Braak, C.J.F., (2003). "Permutation tests for multi-factorial analysis of variance", Journal of Statistical Computation and Simulation, vol. 73, no. 2, pp. 85-113
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    A penalized likelihood method for mapping epistatic quantitative trait loci with one-dimensional genome searches: Genetics 2002

    Boer, M.P. and Ter Braak, C.J.F. and Jansen, R.C., (2002). "A penalized likelihood method for mapping epistatic quantitative trait loci with one-dimensional genome searches", Genetics, vol. 162, no. 2, pp. 951-960
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    Statistical analysis of sediment toxicity by additive monotone regression splines: Ecotoxicology 2002

    De Boer, W.J. and Den Besten, P.J. and Ter Braak, C.F., (2002). "Statistical analysis of sediment toxicity by additive monotone regression splines", Ecotoxicology, vol. 11, no. 6, pp. 435-450
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    Relationship between epiphytic lichens, trace elements and gaseous atmospheric pollutants: Environmental Pollution 2001

    Van Dobben, H.F. and Wolterbeek, H.Th. and Wamelink, G.W.W. and Ter Braak, C.J.F., (2001). "Relationship between epiphytic lichens, trace elements and gaseous atmospheric pollutants", Environmental Pollution, vol. 112, no. 2, pp. 163-169
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    Toward ecologically scaled landscape indices: American Naturalist 2001

    Vos, C.C. and Verboom, J. and Opdam, P.F.M. and Ter Braak, C.J.F., (2001). "Toward ecologically scaled landscape indices", American Naturalist, vol. 157, no. 1, pp. 24-41
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    Incidence function modelling and conservation of the tree frog Hyla arborea in the Netherlands: Ecological Bulletins 2000

    Vos, C.C. and Ter Braak, C.J.F. and Nieuwenhuizen, W., (2000). "Incidence function modelling and conservation of the tree frog Hyla arborea in the Netherlands", Ecological Bulletins, vol. 48, pp. 165-180
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    Dutch Sedge Warblers Acrocephalus schoenobaenus and West-African rainfall: Empirical data and simulation modelling show low population resilience in fragmented marshlands: Ardea 1999

    Foppen, R. and Ter Braak, C.J.F. and Verboom, J. and Reijnen, R., (1999). "Dutch Sedge Warblers Acrocephalus schoenobaenus and West-African rainfall: Empirical data and simulation modelling show low population resilience in fragmented marshlands", Ardea, vol. 87, no. 1, pp. 113-127
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    Principal response curves: Analysis of time-dependent multivariate responses of biological community to stress: Environmental Toxicology and Chemistry 1999

    Van Den Brink, P.J. and Ter Braak, C.J.F., (1999). "Principal response curves: Analysis of time-dependent multivariate responses of biological community to stress", Environmental Toxicology and Chemistry, vol. 18, no. 2, pp. 138-148
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    Ranking of epiphytic lichen sensitivity to air pollution using survey data: A comparison of indicator scales: Lichenologist 1999

    Van Dobben, H.F. and Braak, C.J.F.T., (1999). "Ranking of epiphytic lichen sensitivity to air pollution using survey data: A comparison of indicator scales", Lichenologist, vol. 31, no. 1, pp. 27-39
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    Undergrowth as a biomonitor for deposition of nitrogen and acidity in pine forest: Forest Ecology and Management 1999

    Van Dobben, H.F. and Ter Braak, C.J.F. and Dirkse, G.M., (1999). "Undergrowth as a biomonitor for deposition of nitrogen and acidity in pine forest", Forest Ecology and Management, vol. 114, no. 1, pp. 83-95
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    Effects of atmospheric NH 3 on epiphytic lichens in the Netherlands: The pitfalls of biological monitoring: Atmospheric Environment 1998

    Van Dobben, H.F. and Ter Braak, C.J.F., (1998). "Effects of atmospheric NH 3 on epiphytic lichens in the Netherlands: The pitfalls of biological monitoring", Atmospheric Environment, vol. 32, no. 3, pp. 551-557
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    Multivariate analysis of stress in experimental ecosystems by principal response curves and similarity analysis: Aquatic Ecology 1998

    Van Den Brink, P.J. and Ter Braak, C.J.F., (1998). "Multivariate analysis of stress in experimental ecosystems by principal response curves and similarity analysis", Aquatic Ecology, vol. 32, no. 2, pp. 163-178
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    The objective function of partial least squares regression: Journal of Chemometrics 1998

    Ter Braak, C.J.F. and De Jong, S., (1998). "The objective function of partial least squares regression", Journal of Chemometrics, vol. 12, no. 1, pp. 41-54
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    Ectomycorrhizal sporocarp occurrence as affected by manipulation of litter and humus layers in scots pine stands of different age: Applied Soil Ecology 1996

    Baar, J. and Ter Braak, C.J.F., (1996). "Ectomycorrhizal sporocarp occurrence as affected by manipulation of litter and humus layers in scots pine stands of different age", Applied Soil Ecology, vol. 4, no. 1, pp. 61-73
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    Matching species traits to environmental variables: A new three-table ordination method: Environmental and Ecological Statistics 1996

    Dolédec, S. and Chessel, D. and Ter Braak, C.J.F. and Champely, S., (1996). "Matching species traits to environmental variables: A new three-table ordination method", Environmental and Ecological Statistics, vol. 3, no. 2, pp. 143-166
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    Canonical correspondence analysis and related multivariate methods in aquatic ecology: Aquatic Sciences 1995

    Ter Braak, C.J. and Verdonschot, P.F., (1995). "Canonical correspondence analysis and related multivariate methods in aquatic ecology", Aquatic Sciences, vol. 57, no. 3, pp. 255-289
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    Non-linear methods for multivariate statistical calibration and their use in palaeoecology: A comparison of inverse (κ-nearest neighbours, partial least squares and weighted averaging partial least squares) and classical approaches: Chemometrics and Intelligent Laboratory Systems 1995

    Ter Braak, C.J.F., (1995). "Non-linear methods for multivariate statistical calibration and their use in palaeoecology: A comparison of inverse (κ-nearest neighbours, partial least squares and weighted averaging partial least squares) and classical approaches", Chemometrics and Intelligent Laboratory Systems, vol. 28, no. 1, pp. 165-180
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    Prediction error in partial least squares regression: A critique on the deviation used in The Unscrambler: Chemometrics and Intelligent Laboratory Systems 1995

    De Vries, S. and Ter Braak, C.J.F., (1995). "Prediction error in partial least squares regression: A critique on the deviation used in The Unscrambler", Chemometrics and Intelligent Laboratory Systems, vol. 30, no. 2, pp. 239-245
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    The effects of car traffic on breeding bird populations in woodland. III.Reduction of density in relation to the proximity of main roads: Journal of Applied Ecology 1995

    Reijnen, R. and Foppen, R. and Ter Braak, C. and Thissen, J., (1995). "The effects of car traffic on breeding bird populations in woodland. III.Reduction of density in relation to the proximity of main roads", Journal of Applied Ecology, vol. 32, no. 1, pp. 187-202
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    An experimental manipulation of oligochaete communities in mesocosms treated with chlorpyrifos or nutrient additions: multivariate analyses with Monte Carlo permutation tests: Hydrobiologia 1994

    Verdonschot, P.F.M. and Ter Braak, C.J.F., (1994). "An experimental manipulation of oligochaete communities in mesocosms treated with chlorpyrifos or nutrient additions: multivariate analyses with Monte Carlo permutation tests", Hydrobiologia, vol. 278, no. 1-3, pp. 251-266
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    Canonical community ordination. Part I: basic theory and linear methods: Ecoscience 1994

    Ter Braak, C.J.F., (1994). "Canonical community ordination. Part I: basic theory and linear methods", Ecoscience, vol. 1, no. 2, pp. 127-140
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    On the statistical analysis of vegetation change: A wetland affected by water extraction and soil acidification: Journal of Vegetation Science 1994

    ter Braak, C.J.F. and Wiertz, J., (1994). "On the statistical analysis of vegetation change: A wetland affected by water extraction and soil acidification", Journal of Vegetation Science, vol. 5, no. 3, pp. 361-372
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    WACALIB version 3.3 - a computer program to reconstruct environmental variables from fossil assemblages by weighted averaging and to derive sample-specific errors of prediction: Journal of Paleolimnology 1994

    Line, J.M. and ter Braak, C.J.F. and Birks, H.J.B., (1994). "WACALIB version 3.3 - a computer program to reconstruct environmental variables from fossil assemblages by weighted averaging and to derive sample-specific errors of prediction", Journal of Paleolimnology, vol. 10, no. 2, pp. 147-152
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    Weighted averaging partial least squares regression (WA-PLS): an improved method for reconstructing environmental variables from species assemblages: Hydrobiologia 1993

    ter Braak, C.J.F. and Juggins, S., (1993). "Weighted averaging partial least squares regression (WA-PLS): an improved method for reconstructing environmental variables from species assemblages", Hydrobiologia, vol. 269-270, no. 1, pp. 485-502
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    Design-based versus model-based sampling strategies: Comment on R. J. Barnes' : Mathematical Geology 1992

    de Gruijter, J.J. and ter Braak, C.J.F., (1992). "Design-based versus model-based sampling strategies: Comment on R. J. Barnes' "bounding the required sample size for geologic site characterization"", Mathematical Geology, vol. 24, no. 7, pp. 859-864
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    Landscape change as a possible cause of the badger Meles meles L. decline in The Netherlands: Biological Conservation 1992

    van der Zee, F.F. and Wiertz, J. and Ter Braak, C.J.F. and van Apeldoorn, R.C. and Vink, J., (1992). "Landscape change as a possible cause of the badger Meles meles L. decline in The Netherlands", Biological Conservation, vol. 61, no. 1, pp. 17-22
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    Diatoms and pH reconstruction: Philosophical Transactions - Royal Society of London, B 1990

    Birks, H.J.B. and Line, J.M. and Juggins, S. and Stevenson, A.C. and Ter Braak, C.J.F., (1990). "Diatoms and pH reconstruction", Philosophical Transactions - Royal Society of London, B, vol. 327, no. 1240, pp. 263-278
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    Interpreting canonical correlation analysis through biplots of structure correlations and weights: Psychometrika 1990

    ter Braak, C.J.F., (1990). "Interpreting canonical correlation analysis through biplots of structure correlations and weights", Psychometrika, vol. 55, no. 3, pp. 519-531
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    Model-free estimation from spatial samples: A reappraisal of classical sampling theory: Mathematical Geology 1990

    de Gruijter, J.J. and ter Braak, C.J.F., (1990). "Model-free estimation from spatial samples: A reappraisal of classical sampling theory", Mathematical Geology, vol. 22, no. 4, pp. 407-415
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    CANOCO - an extension of DECORANA to analyze species-environment relationships: Hydrobiologia 1989

    ter Braak, C.J.F., (1989). "CANOCO - an extension of DECORANA to analyze species-environment relationships", Hydrobiologia, vol. 184, no. 3, pp. 169-170
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    Inferring pH from diatoms: a comparison of old and new calibration methods: Hydrobiologia 1989

    ter Braak, C.J.F. and van Dame, H., (1989). "Inferring pH from diatoms: a comparison of old and new calibration methods", Hydrobiologia, vol. 178, no. 3, pp. 209-223
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    A Theory of Gradient Analysis: Advances in Ecological Research 1988

    Ter Braak, C.J.F. and Prentice, I.C., (1988). "A Theory of Gradient Analysis", Advances in Ecological Research, vol. 18, no. C, pp. 271-317
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    CANOCO-an extension of DECORANA to analyze species-environment relationships: Vegetatio 1988

    ter Braak, C.J.F., (1988). "CANOCO-an extension of DECORANA to analyze species-environment relationships", Vegetatio, vol. 75, no. 3, pp. 159-160
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    Data analysis in community and landscape ecology.: Data analysis in community and landscape ecology. 1987

    Jongman, R.H.G. and Ter Braak, C.J.F. and Van Tongeren, O.F.R., (1987). "Data analysis in community and landscape ecology.", Data analysis in community and landscape ecology.
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    Ecological amplitudes of plant species and the internal consistency of Ellenberg's indicator values for moisture: Vegetatio 1987

    Ter Braak, C.J.F. and Gremmen, N.J.M., (1987). "Ecological amplitudes of plant species and the internal consistency of Ellenberg's indicator values for moisture", Vegetatio, vol. 69, no. 1-3, pp. 79-87
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    The analysis of vegetation-environment relationships by canonical correspondence analysis: Vegetatio 1987

    Ter Braak, C.J.F., (1987). "The analysis of vegetation-environment relationships by canonical correspondence analysis", Vegetatio, vol. 69, no. 1-3, pp. 69-77
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    Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis.: Ecology 1986

    Ter Braak, C.J.F., (1986). "Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis.", Ecology, vol. 67, no. 5, pp. 1167-1179
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    Weighted averaging of species indicator values: Its efficiency in environmental calibration: Mathematical Biosciences 1986

    Ter Braak, C.J.F. and Barendregt, L.G., (1986). "Weighted averaging of species indicator values: Its efficiency in environmental calibration", Mathematical Biosciences, vol. 78, no. 1, pp. 57-72
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    Weighted averaging, logistic regression and the Gaussian response model: Vegetatio 1986

    ter Braak, C.J.F. and Looman, C.W.N., (1986). "Weighted averaging, logistic regression and the Gaussian response model", Vegetatio, vol. 65, no. 1, pp. 3-11
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    The effect of isolation on the number of woodland birds in small woods in the Netherlands.: Journal of Biogeography 1984

    Opdam, P. and Van Dorp, D. and Ter Braak, C.J.F., (1984). "The effect of isolation on the number of woodland birds in small woods in the Netherlands.", Journal of Biogeography, vol. 11, no. 6, pp. 473-478
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    Principal components biplots and alpha and beta diversity.: Ecology 1983

    Ter Braak, C.J.F., (1983). "Principal components biplots and alpha and beta diversity.", Ecology, vol. 64, no. 3, pp. 454-462
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    Impact of acidification on diatoms and chemistry of Dutch moorland pools: Hydrobiologia 1981

    van Dam, H. and Suurmond, G. and ter Braak, C.J.F., (1981). "Impact of acidification on diatoms and chemistry of Dutch moorland pools", Hydrobiologia, vol. 83, no. 3, pp. 425-459
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    The impact of acidification on diatoms and chemistry of Dutch moorland pools: Hydrobiological Bulletin 1980

    van Dam, H. and Suurmond, G. and Ter Braak, C., (1980). "The impact of acidification on diatoms and chemistry of Dutch moorland pools", Hydrobiological Bulletin, vol. 14, no. 3

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