Personal information

Activities

Employment (1)

Stanford University: Stanford, CA, US

2015-09-01 to 2021-11 | PhD candidate (Bioengineering)
Employment
Source: Self-asserted source
Yuan Xue

Education and qualifications (3)

Reed College: Portland, OR, US

BA (Biology)
Qualification
Source: Self-asserted source
Yuan Xue

Stanford University School of Engineering: Stanford, CA, US

2015-09 to 2022-01 | Ph.D. (Bioengineering)
Education
Source: Self-asserted source
Yuan Xue

Stanford University School of Engineering: Stanford, CA, US

2015-09-01 to 2017-05 | Master (Bioengineering)
Qualification
Source: Self-asserted source
Yuan Xue

Works (16)

Analytical Validation of an Early Detection Pancreatic Cancer Test Using 5-Hydroxymethylation Signatures

The Journal of Molecular Diagnostics
2024-09 | Journal article
Part of ISSN: 1525-1578
Contributors: Shimul Chowdhury; Michael Kesling; Micah Collins; Vanessa Lopez; Yuan Xue; Glenn Oliveira; Verena Friedl; Anna Bergamaschi; David Haan; Wayne Volkmuth et al.
Source: Self-asserted source
Yuan Xue

Coordinated wound responses in a regenerative animal-algal holobiont

Nature Communications
2024-05-13 | Journal article
Part of ISSN: 2041-1723
Contributors: Dania Nanes Sarfati; Yuan Xue; Eun Sun Song; Ashley Byrne; Daniel Le; Spyros Darmanis; Stephen R. Quake; Adrien Burlacot; James Sikes; Bo Wang
Source: Self-asserted source
Yuan Xue

Single-cell profiling identifies ACE + granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection

Science Advances
2023-01-06 | Journal article
Contributors: Trung H. M. Pham; Yuan Xue; Susan M. Brewer; Kenneth E. Bernstein; Stephen R. Quake; Denise M. Monack
Source: check_circle
Crossref

Heterologous reporter expression in the planarian Schmidtea mediterranea through somatic mRNA transfection

Cell Reports Methods
2022-10 | Journal article
Part of ISSN: 2667-2375
Contributors: Richard Nelson Hall; Uri Weill; Leonard Drees; Sergio Leal-Ortiz; Hongquan Li; Margarita Khariton; Chew Chai; Yuan Xue; Benyamin Rosental; Stephen R. Quake et al.
Source: Self-asserted source
Yuan Xue

Single-cell profiling identifies ACE+ granuloma macrophages as a non-permissive niche for intracellular bacteria during persistent Salmonella infection

2022-07-22 | Preprint
Contributors: Trung H. M. Pham; Yuan Xue; Susan M. Brewer; KE Bernstein; Stephen R. Quake; Denise M. Monack
Source: check_circle
Crossref

Temperature effect on polymerase fidelity

Journal of Biological Chemistry
2021-11 | Journal article
Contributors: Yuan Xue; Ido Braslavsky; Stephen R. Quake
Source: check_circle
Crossref

Temperature Effect on Polymerase Fidelity

2020-08-05 | Preprint
Contributors: Yuan Xue; Ido Braslavsky; Stephen R. Quake
Source: check_circle
Crossref

Single-cell analysis of Schistosoma mansoni reveals a conserved genetic program controlling germline stem cell fate

2020-07-06 | Other
Contributors: Pengyang Li; Dania Nanes Sarfati; Yuan Xue; Xi Yu; Alexander J. Tarashansky; Stephen R. Quake; Bo Wang
Source: check_circle
Crossref

A single-parasite transcriptional atlas of Toxoplasma Gondii reveals novel control of antigen expression

eLife
2020-02-17 | Journal article
Contributors: Yuan Xue; Terence C Theisen; Suchita Rastogi; Abel Ferrel; Stephen R Quake; John C Boothroyd
Source: check_circle
Crossref

Differential Impacts on Host Transcription by ROP and GRA Effectors from the Intracellular ParasiteToxoplasma gondii

2020-02-05 | Preprint
Contributors: Suchita Rastogi; Yuan Xue; Stephen R. Quake; John C. Boothroyd
Source: check_circle
Crossref

Self-assembling manifolds in single-cell RNA sequencing data

eLife
2019 | Journal article
EID:

2-s2.0-85073305952

Contributors: Tarashansky, A.J.; Xue, Y.; Li, P.; Quake, S.R.; Wang, B.
Source: Self-asserted source
Yuan Xue via Scopus - Elsevier

A single-parasite transcriptional atlas of Toxoplasma gondii reveals novel control of antigen expression

2019-06-03 | Other
Contributors: Yuan Xue; Terence C. Theisen; Suchita Rastogi; Abel Ferrel; Stephen R. Quake; John C. Boothroyd
Source: check_circle
Crossref

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

Nature
2018 | Journal article
EID:

2-s2.0-85055080981

Contributors: Schaum, N.; Karkanias, J.; Neff, N.F.; May, A.P.; Quake, S.R.; Wyss-Coray, T.; Darmanis, S.; Batson, J.; Botvinnik, O.; Chen, M.B. et al.
Source: Self-asserted source
Yuan Xue via Scopus - Elsevier

Self-assembling Manifolds in Single-cell RNA Sequencing Data

2018-07-07 | Other
Contributors: Alexander J. Tarashansky; Yuan Xue; Pengyang Li; Stephen R. Quake; Bo Wang
Source: check_circle
Crossref

The RpoE Stress Response Pathway Mediates Reduction of the Virulence of Enteropathogenic Escherichia coli by Zinc

Applied and Environmental Microbiology
2015-06-01 | Journal article
Part of ISSN: 0099-2240
Part of ISSN: 1098-5336
Source: Self-asserted source
Yuan Xue
grade
Preferred source (of 2)‎

Activation of lysosomal function in the course of autophagy via mTORC1 suppression and autophagosome-lysosome fusion

Cell Research
2013-04 | Journal article
Part of ISSN: 1001-0602
Part of ISSN: 1748-7838
Source: Self-asserted source
Yuan Xue