Personal information

Emails & domains

Verified email addresses

Verified email domains

Websites & social links

http://bioinf.modares.ac.ir/

Other IDs

Scopus Author ID: 8585729900
ResearcherID: C-7703-2009

Countries

Iran

Activities

Collapse all

Employment (2)

University of Georgia: Athens, Georgia, US

2025-01-01 to present | Associate Research Scientist (Center for Molecular Medicine)
Employment
Source: Self-asserted source
Seyed Shahriar Arab

University of California, San Diego: San Diego, US

2023-08-01 to 2024-12-31 (Pediatrics)
Employment
Source: Self-asserted source
Seyed Shahriar Arab

Education and qualifications (3)

University of Tehran: Tehran, Tehran, IR

2004-09-22 to 2010-03-01 | PhD (Bioinformatics)
Education
Source: Self-asserted source
Seyed Shahriar Arab

Tarbiat Modares University: Tehran, Tehran, IR

1997-09-23 to 2000-05-01 | MSc (Biophysics)
Education
Source: Self-asserted source
Seyed Shahriar Arab

University of Tehran: Tehran, Tehran, IR

1992-09-22 to 1997-02-18 | BSc (Biology)
Education
Source: Self-asserted source
Seyed Shahriar Arab

Works (48)

Screening of BindingDB database ligands against EGFR, HER2, Estrogen, Progesterone and NF-κB receptors based on machine learning and molecular docking

Computers in Biology and Medicine
2024-12 | Journal article
DOI: 10.1016/j.compbiomed.2024.109279
Contributors: Parham Rezaee; Shahab Rezaee; Malik Maaza; Seyed Shahriar Arab
Source: check_circle
Crossref

Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis

PLOS ONE
2024-12-30 | Journal article
DOI: 10.1371/journal.pone.0308817
Contributors: Ali Bigdeli; Awatif Abid Al-Judaibi; Mostafa Ghaderi-Zefrehei; Bluma J. Lesch; Mehrdad Behmanesh; S. Shahriar Arab
Source: check_circle
Crossref

Optimizing CuO nanoparticle synthesis via walnut green husk extract utilizing response surface methodology

Journal of Molecular Structure
2024-11 | Journal article
DOI: 10.1016/j.molstruc.2024.139077
Contributors: Farzaneh Barati; Fakhrisadat Hosseini; Parinaz Ghadam; Seyed Shahriar Arab
Source: check_circle
Crossref

Rational peptide design for targeting cancer cell invasion

Proteins: Structure, Function, and Bioinformatics
2024-01 | Journal article
DOI: 10.1002/prot.26580
Contributors: Mohammad Mahmoudi Gomari; Seyed Shahriar Arab; Saeed Balalaie; Sorour Ramezanpour; Arshad Hosseini; Nikolay V. Dokholyan; Parastoo Tarighi
Source: check_circle
Crossref

A comprehensive computer simulation insight into inhibitory mechanisms of EGCG and NQTrp ligands on amyloid-beta assemblies as the Alzheimer’s disease insignia

Journal of Biomolecular Structure and Dynamics
2023-12-21 | Journal article
DOI: 10.1080/07391102.2022.2158939
Contributors: Hamed Zahraee; Seyed Shahriar Arab; Zahra Khoshbin; Mohammad Reza Bozorgmehr
Source: check_circle
Crossref

Construction of an Exudative Age-Related Macular Degeneration Diagnostic and Therapeutic Molecular Network Using Multi-Layer Network Analysis, a Fuzzy Logic Model, and Deep Learning Techniques: Are Retinal and Brain Neurodegenerative Disorders Related?

Pharmaceuticals
2023-11 | Journal article | Author
DOI: 10.3390/ph16111555
Contributors: Hamid Latifi-Navid; Amir Barzegar Behrooz; Saleh Jamehdor; Maliheh Davari; MASOUD LATIFINAVID; Narges Zolfaghari; Somayeh Piroozmand; Sepideh Taghizadeh; Mahsa Bourbour; Golnaz Shemshaki et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute

Investigation of thermal stability characteristic in family A DNA polymerase - A theoretical study

Progress in Biophysics and Molecular Biology
2023-09 | Journal article
DOI: 10.1016/j.pbiomolbio.2023.05.003
Contributors: Seddigheh Borhani; Seyed Shahriar Arab
Source: check_circle
Crossref

Computational assessment of pigment epithelium-derived factor as an anti-cancer protein during its interaction with the receptors

Journal of Biomolecular Structure and Dynamics
2023-07-03 | Journal article
DOI: 10.1080/07391102.2022.2069863
Contributors: Behzad Shahbazi; Seyed Shahriar Arab; Ladan Mafakher; Kayhan Azadmansh; Ladan Teimoori-Toolabi
Source: check_circle
Crossref

Next-generation version of recombinant human interferon-beta: A molecular dynamic simulation study

Informatics in Medicine Unlocked
2022 | Journal article
DOI: 10.1016/j.imu.2022.101036
Contributors: Mohadeseh Haji Abdolvahab; Rayeheh Vafaee; S. Shahriar Arab; Mehrdad Behmanesh
Source: check_circle
Crossref

Evaluation of pH change effects on the HSA folding and its drug binding characteristics, a computational biology investigation

Proteins: Structure, Function, and Bioinformatics
2022-11 | Journal article
DOI: 10.1002/prot.26386
Contributors: Mohammad Mahmoudi Gomari; Neda Rostami; Davood Rabiei Faradonbeh; Hamid Reza Asemaneh; Giti Esmailnia; Shahriar Arab; Marziye Farsimadan; Arshad Hosseini; Nikolay V. Dokholyan
Source: check_circle
Crossref

Molecular Dynamics Simulation as a Promising Approach for Computational Study of Liquid Crystal-based Aptasensors

2022-11-21 | Preprint
DOI: 10.1101/2022.11.19.517204
Contributors: Hamed Zahraee; Seyed Shahriar Arab; Zahra Khoshbin; Seyed Mohammad Taghdisi; Khalil Abnous
Source: check_circle
Crossref

Analysis of the relationship between proteins of microorganisms and MS disease by bioinformatics methods

2022-04-13 | Preprint
DOI: 10.21203/rs.3.rs-1510914/v1
Contributors: Ali Bigdeli; Seyed Shahriar Arab; Mehrdad Behmanesh
Source: check_circle
Crossref

Prediction of chemoresistance trait of cancer cell lines using machine learning algorithms and systems biology analysis

Journal of Big Data
2021-07-05 | Journal article
DOI: 10.1186/s40537-021-00477-z
Contributors: Atousa Ataei; Niloufar Seyed Majidi; Javad Zahiri; Mehrdad Rostami; S. Shahriar Arab; Albert A. Rizvanov
Source: check_circle
Crossref

Efficacy assessment of a triple anthrax chimeric antigen as a vaccine candidate in guinea pigs: challenge test with Bacillus anthracis 17 JB strain spores

Immunopharmacology and Immunotoxicology
2021-07-04 | Journal article
DOI: 10.1080/08923973.2021.1945087
Contributors: Masoud Abdous; Sadegh Hasannia; Ali Hatef Salmanian; Seyed-Shahryar Arab
Source: check_circle
Crossref

Prediction of Chemoresistance Trait of Cancer Cell Lines using Machine Learning Algorithms and Systems Biology Analysis

2021-03-11 | Preprint
DOI: 10.21203/rs.3.rs-285902/v1
Contributors: Atousa Ataei; Niloufar Seyed Majidi; Javad Zahiri; Mehrdad Rostami; Seyed Shahriar Arab; Albert A. Rizvanov
Source: check_circle
Crossref

Computational simulations assessment of mutations impact on streptokinase (SK) from a group G streptococci with enhanced activity – insights into the functional roles of structural dynamics flexibility of SK and stabilization of SK–μplasmin catalytic complex

Journal of Biomolecular Structure and Dynamics
2019-05-24 | Journal article
DOI: 10.1080/07391102.2018.1472668
Contributors: Faegheh Kazemi; Seyed Shahriar Arab; Nasir Mohajel; Malihe Keramati; Niloofar Niknam; Mohammad Mehdi Aslani; Farzin Roohvand
Source: check_circle
Crossref

Phytochemicals, withaferin A and carnosol, overcome pancreatic cancer stem cells as c-Met inhibitors

Biomedicine & Pharmacotherapy
2018-10 | Journal article
DOI: 10.1016/j.biopha.2018.07.055
Contributors: Shima Aliebrahimi; Shideh Montasser Kouhsari; Seyed Shahriar Arab; Amir Shadboorestan; Seyed Nasser Ostad
Source: check_circle
Crossref

Loop modelling 1.0

Journal of Molecular Graphics and Modelling
2018-09 | Journal article
DOI: 10.1016/j.jmgm.2018.06.001
Contributors: Niloofar Shirvanizadeh; Gert Vriend; Seyed Shahriar Arab
Source: check_circle
Crossref

A novel enzyme based SPR-biosensor to detect bromocriptine as an ergoline derivative drug

Sensors and Actuators, B: Chemical
2017 | Journal article
DOI: 10.1016/j.snb.2016.08.165
EID:

2-s2.0-84985920144
Contributors: Jabbari, S.; Dabirmanesh, B.; Arab, S.S.; Amanlou, M.; Daneshjou, S.; Gholami, S.; Khajeh, K.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Catalytic efficiency and thermostability improvement of Suc2 invertase through rational site-directed mutagenesis

Enzyme and Microbial Technology
2017 | Journal article
DOI: 10.1016/j.enzmictec.2016.09.004
EID:

2-s2.0-84987974296
Contributors: Mohandesi, N.; Haghbeen, K.; Ranaei, O.; Arab, S.S.; Hassani, S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Increase of Bacillus badius Phenylalanine dehydrogenase specificity towards phenylalanine substrate by site-directed mutagenesis

Archives of Biochemistry and Biophysics
2017-12 | Journal article
DOI: 10.1016/j.abb.2017.10.009
Contributors: Farzad Yousefi; Farangis Ataei; Seyed Shahriar Arab; Saman Hosseinkhani
Source: check_circle
Crossref

The inhibitory effects of biomimetically designed peptides on α-synuclein aggregation

Archives of Biochemistry and Biophysics
2017-11 | Journal article
DOI: 10.1016/j.abb.2017.09.015
Contributors: Niloofar Rezaeian; Niloofar Shirvanizadeh; Soheila Mohammadi; Maryam Nikkhah; Seyed Shahriar Arab
Source: check_circle
Crossref

Appraisal of role of the polyanionic inducer length on amyloid formation by 412-residue 1N4R Tau protein: A comparative study

Archives of Biochemistry and Biophysics
2016 | Journal article
DOI: 10.1016/j.abb.2016.09.004
EID:

2-s2.0-84988458281
Contributors: Jangholi, A.; Ashrafi-Kooshk, M.R.; Arab, S.S.; Riazi, G.; Mokhtari, F.; Poorebrahim, M.; Mahdiuni, H.; Kurganov, B.I.; Moosavi-Movahedi, A.A.; Khodarahmi, R.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Evaluating the accuracy of protein design using native secondary sub-structures

BMC Bioinformatics
2016 | Journal article
DOI: 10.1186/s12859-016-1199-y
EID:

2-s2.0-84984944729
Contributors: Movahedi, M.; Zare-Mirakabad, F.; Arab, S.S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

How Hepatitis C Virus leads to hepatocellular carcinoma: A network-based study

Hepatitis Monthly
2016 | Journal article
DOI: 10.5812/hepatmon.36005
EID:

2-s2.0-84978954985
Contributors: Poortahmasebi, V.; Poorebrahim, M.; Najafi, S.; Jazayeri, S.M.; Alavian, S.M.; Arab, S.S.; Ghavami, S.; Alavian, S.E.; Moghadam, A.R.; Amiri, M.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Inhibition of Guinea pig aldehyde oxidase activity by different flavonoid compounds: An in vitro study

Bioorganic Chemistry
2016 | Journal article
DOI: 10.1016/j.bioorg.2015.12.004
EID:

2-s2.0-84951816270
Contributors: Siah, M.; Farzaei, M.H.; Ashrafi-Kooshk, M.R.; Adibi, H.; Arab, S.S.; Rashidi, M.R.; Khodarahmi, R.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory

Computers in Biology and Medicine
2016 | Journal article
DOI: 10.1016/j.compbiomed.2016.03.012
EID:

2-s2.0-84962286180
Contributors: Niknam, N.; Khakzad, H.; Arab, S.S.; Naderi-Manesh, H.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

α-Cyperone of Cyperus rotundus is an effective candidate for reduction of inflammation by destabilization of microtubule fibers in brain

Journal of Ethnopharmacology
2016 | Journal article
DOI: 10.1016/j.jep.2016.06.058
EID:

2-s2.0-84987861911
Contributors: Azimi, A.; Ghaffari, S.M.; Riazi, G.H.; Arab, S.S.; Tavakol, M.M.; Pooyan, S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Bayesian alignment of proteins via Delaunay tetrahedralization

Journal of Applied Statistics
2015 | Journal article
DOI: 10.1080/02664763.2014.995605
EID:

2-s2.0-84924264845
Contributors: Najibi, S.M.; Faghihi, M.R.; Golalizadeh, M.; Arab, S.S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

CentiServer: A comprehensive resource, web-based application and R package for centrality analysis

PLoS ONE
2015 | Journal article
DOI: 10.1371/journal.pone.0143111
EID:

2-s2.0-84956855734
Contributors: Jalili, M.; Salehzadeh-Yazdi, A.; Asgari, Y.; Arab, S.S.; Yaghmaie, M.; Ghavamzadeh, A.; Alimoghaddam, K.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Enhancement of Thermostability and Kinetic Efficiency of Aspergillus niger PhyA Phytase by Site-Directed Mutagenesis

Applied Biochemistry and Biotechnology
2015 | Journal article
DOI: 10.1007/s12010-014-1440-y
EID:

2-s2.0-84924040634
Contributors: Hesampour, A.; Siadat, S.E.R.; Malboobi, M.A.; Mohandesi, N.; Arab, S.S.; Ghahremanpour, M.M.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Mitochondrial membrane disruption by aggregation products of ALS-causing superoxide dismutase-1 mutants

International Journal of Biological Macromolecules
2015 | Journal article
DOI: 10.1016/j.ijbiomac.2015.01.022
EID:

2-s2.0-84922933742
Contributors: Salehi, M.; Nikkhah, M.; Ghasemi, A.; Arab, S.S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Development of a highly-potent anti-angiogenic VEGF<inf>8-109</inf> heterodimer by directed blocking of its VEGFR-2 binding site

FEBS Journal
2014 | Journal article
DOI: 10.1111/febs.12956
EID:

2-s2.0-84912144325
Contributors: Ghavamipour, F.; Shahangian, S.S.; Sajedi, R.H.; Arab, S.S.; Mansouri, K.; Aghamaali, M.R.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

MemBuilder: A web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program

Bioinformatics
2014 | Journal article
DOI: 10.1093/bioinformatics/btt680
EID:

2-s2.0-84893232800
Contributors: Ghahremanpour, M.M.; Arab, S.S.; Aghazadeh, S.B.; Zhang, J.; Van Der Spoel, D.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Synthesis and investigation of new Hesperadin analogues antitumor effects on HeLa cells

Journal of Chemical Biology
2014 | Journal article
DOI: 10.1007/s12154-014-0111-3
EID:

2-s2.0-84904766535
Contributors: Shamsipour, F.; Hosseinzadeh, S.; Arab, S.S.; Vafaei, S.; Farid, S.; Jeddi-Tehrani, M.; Balalaie, S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

NETAL: A new graph-based method for global alignment of protein-protein interaction networks

Bioinformatics
2013 | Journal article
DOI: 10.1093/bioinformatics/btt202
EID:

2-s2.0-84879967643
Contributors: Neyshabur, B.; Khadem, A.; Hashemifar, S.; Arab, S.S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Putracer: A novel method for identification of continuous-domains in multi-domain proteins

Journal of Bioinformatics and Computational Biology
2013 | Journal article
DOI: 10.1142/S021972001340012X
EID:

2-s2.0-84874808235
Contributors: Arab, S.S.; Gharamaleki, M.P.; Pashandi, Z.; Mobasseri, R.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

The design of a new truncated and engineered alpha1-antitrypsin based on theoretical studies: An antiprotease therapeutics for pulmonary diseases

Theoretical Biology and Medical Modelling
2013 | Journal article
DOI: 10.1186/1742-4682-10-36
EID:

2-s2.0-84878006295
Contributors: Pirooznia, N.; Hasannia, S.; Arab, S.S.; Lotfi, A.S.; Ghanei, M.; Shali, A.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Inference of gene regulatory networks by extended Kalman filtering using gene expression time seriesdata

BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms
2012 | Journal article
EID: 2-s2.0-84861991971
Contributors: Arab, S.S.; Fatemizadeh, E.; Fouladi, R.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier
grade
Preferred source (of 2)‎

Protein structure prediction using bio-inspired algorithm: A review

AISP 2012 - 16th CSI International Symposium on Artificial Intelligence and Signal Processing
2012 | Conference paper
DOI: 10.1109/AISP.2012.6313744
EID:

2-s2.0-84869157060
Contributors: Karami, Y.; Fathy, M.; Khakzad, H.; Shirazi, H.; Arab, S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Finding protein active sites using approximate sub-graph isomorphism

2011 1st Middle East Conference on Biomedical Engineering, MECBME 2011
2011 | Conference paper
DOI: 10.1109/MECBME.2011.5752157
EID:

2-s2.0-79957886466
Contributors: Dezfouli, M.E.A.; Arab, S.S.; Fatemizadeh, E.; Hosseynimanesh, N.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

A pairwise residue contact area-based mean force potential for discrimination of native protein structure

BMC Bioinformatics
2010 | Journal article
DOI: 10.1186/1471-2105-11-16
EID:

2-s2.0-76749140453
Contributors: Arab, S.; Sadeghi, M.; Eslahchi, C.; Pezeshk, H.; Sheari, A.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Overcoming drug resistance by co-targeting

Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010
2010 | Conference paper
DOI: 10.1109/BIBM.2010.5706562
EID:

2-s2.0-79952393284
Contributors: Ayati, M.; Taheri, G.; Arab, S.; Wong, L.; Eslahchi, C.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

STON: A novel method for protein three-dimensional structure comparison

Computers in Biology and Medicine
2009 | Journal article
DOI: 10.1016/j.compbiomed.2008.12.004
EID:

2-s2.0-59849094223
Contributors: Eslahchi, C.; Pezeshk, H.; Sadeghi, M.; Massoud Rahimi, A.; Maboudi Afkham, H.; Arab, S.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins

BMC Bioinformatics
2008 | Journal article
DOI: 10.1186/1471-2105-9-274
EID:

2-s2.0-47749135261
Contributors: Sheari, A.; Kargar, M.; Katanforoush, A.; Arab, S.; Sadeghi, M.; Pezeshk, H.; Eslahchi, C.; Marashi, S.-A.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

A method for protein accessibility prediction based on residue types and conformational states

Computational Biology and Chemistry
2007 | Journal article
DOI: 10.1016/j.compbiolchem.2007.08.006
EID:

2-s2.0-34948826442
Contributors: Zarei, R.; Arab, S.; Sadeghi, M.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Prediction of protein secondary structure based on residue pair types and conformational states using dynamic programming algorithm

FEBS Letters
2005 | Journal article
DOI: 10.1016/j.febslet.2005.04.082
EID:

2-s2.0-20444408014
Contributors: Sadeghi, M.; Parto, S.; Arab, S.; Ranjbar, B.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier

Prediction of protein surface accessibility with information theory

Proteins: Structure, Function and Genetics
2001 | Journal article
DOI: 10.1002/1097-0134(20010301)42:4<452::AID-PROT40>3.0.CO;2-Q
Contributors: Arab, S.; Moosavi Movahedi, A.A.; Naderi-Manesh, H.; Sadeghi, M.
Source: Self-asserted source
Seyed Shahriar Arab via Scopus - Elsevier
grade
Preferred source (of 2)‎

Peer review (7 reviews for 6 publications/grants)

Review activity for BMC bioinformatics (1)
Review activity for Computers in biology and medicine. (1)
Review activity for Current research in structural biology. (1)
Review activity for Iranian journal of biotechnology (1)
Review activity for Journal of biomolecular structure and dynamics. (2)
Review activity for Proteins. (1)
How many people are using ORCID?