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Employment (2)

Pohang University of Science and Technology Department of Life Sciences: Pohang, KR

2018-10-01 to present | Professor (Department of Life Sciences)
Employment
Source: Self-asserted source
Tae-Kyung Kim

University of Texas Southwestern Medical School: Dallas, TX, US

2010-01-01 to present | Associate Professor (Neuroscience)
Employment
Source: Self-asserted source
Tae-Kyung Kim

Education and qualifications (2)

Rutgers Robert Wood Johnson Medical School: Piscataway, NJ, US

Ph.D. (Biochemistry)
Education
Source: Self-asserted source
Tae-Kyung Kim

Harvard Medical School: Boston, MA, US

postdoc (Neurobiology)
Education
Source: Self-asserted source
Tae-Kyung Kim

Works (48)

The capicua-ataxin-1-like complex regulates Notch-driven marginal zone B cell development and sepsis progression

Nature Communications
2024-12-04 | Journal article
Contributors: Jong Seok Park; Minjung Kang; Han Bit Kim; Hyebeen Hong; Jongeun Lee; Youngkwon Song; Yunjung Hur; Soeun Kim; Tae-Kyung Kim; Yoontae Lee
Source: check_circle
Crossref

Regulatory RNA: from molecular insights to therapeutic frontiers

Experimental & Molecular Medicine
2024-06-14 | Journal article
Contributors: TaeSoo Kim; Tae-Kyung Kim
Source: check_circle
Crossref

Spatial transcriptomics in neuroscience

Experimental & Molecular Medicine
2023-10-02 | Journal article
Contributors: Namyoung Jung; Tae-Kyung Kim
Source: check_circle
Crossref

CHD4 conceals aberrant CTCF-binding sites at TAD interiors by regulating chromatin accessibility in mESCs

bioRxiv
2021 | Other
EID:

2-s2.0-85111030032

Part of ISSN: 26928205
Contributors: Han, S.; Lee, H.; Lee, A.J.; Kim, S.-K.; Jung, I.; Koh, G.Y.; Kim, T.-K.; Lee, D.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

CHD4 Conceals Aberrant CTCF-Binding Sites at TAD Interiors by Regulating Chromatin Accessibility in Mouse Embryonic Stem Cells

Molecules and Cells
2021-11 | Journal article
Contributors: Sungwook Han; Hosuk Lee; Andrew J. Lee; Seung-Kyoon Kim; Inkyung Jung; Gou Young Koh; Tae-Kyung Kim; Daeyoup Lee
Source: check_circle
Crossref

Identification and Functional Characterization of Two Noncoding RNAs Transcribed from Putative Active Enhancers in Hepatocellular Carcinoma

Molecules and Cells
2021-09 | Journal article
Contributors: Ye-Eun Lee; Jiyeon Lee; Yong Sun Lee; Jiyoung Joan Jang; Hyeonju Woo; Hae In Choi; Young Gyu Chai; Tae-Kyung Kim; TaeSoo Kim; Lark Kyun Kim et al.
Source: check_circle
Crossref

Hippocampal subfield transcriptome analysis in schizophrenia psychosis

Molecular Psychiatry
2021-06-09 | Journal article
Contributors: Jessica Marie Perez; Stefano Berto; Kelly Gleason; Subroto Ghose; Chunfeng Tan; Tae-Kyung Kim; Genevieve Konopka; Carol A Tamminga
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Advances in higher-order chromatin architecture: the move towards 4D genome

BMB Reports
2021-05-31 | Journal article
Contributors: Namyoung Jung; Tae-Kyung Kim
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Functional coordination of BET family proteins underlies altered transcription associated with memory impairment in fragile X syndrome

Science Advances
2021-05-21 | Journal article
Contributors: Seung-Kyoon Kim; Xihui Liu; Jongmin Park; Dahun Um; Gokhul Kilaru; Cheng-Ming Chiang; Mingon Kang; Kimberly M. Huber; Keunsoo Kang; Tae-Kyung Kim
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF

2021-04-26 | Preprint
Contributors: Vladyslava Gorbovytska; Seung-Kyoon Kim; Filiz Kuybu; Michael Götze; Dahun Um; Keunsoo Kang; Andreas Pittroff; Lisa-Marie Schneider; Alexander Leitner; Tae-Kyung Kim et al.
Source: check_circle
Crossref

Emerging themes in neuronal activity-dependent gene expression

Molecular and Cellular Neuroscience
2018 | Journal article
EID:

2-s2.0-85039432856

Part of ISSN: 10959327 10447431
Contributors: Madabhushi, R.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

New Molecular Insights into the Excitation-Transcription Coupling

Neuron
2018 | Journal article
EID:

2-s2.0-85046171644

Part of ISSN: 10974199 08966273
Contributors: Kim, S.-K.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

PASNet: Pathway-associated sparse deep neural network for prognosis prediction from high-throughput data

BMC Bioinformatics
2018 | Journal article
EID:

2-s2.0-85058516008

Part of ISSN: 14712105
Contributors: Hao, J.; Kim, Y.; Kim, T.-K.; Kang, M.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

An Intrinsic Transcriptional Program Underlying Synaptic Scaling during Activity Suppression

Cell Reports
2017 | Journal article
EID:

2-s2.0-85011854022

Part of ISSN: 22111247
Contributors: Schaukowitch, K.; Reese, A.L.; Kim, S.-K.; Kilaru, G.; Joo, J.-Y.; Kavalali, E.T.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

HDAC5 and Its Target Gene, Npas4, Function in the Nucleus Accumbens to Regulate Cocaine-Conditioned Behaviors

Neuron
2017 | Journal article
EID:

2-s2.0-85031034998

Part of ISSN: 10974199 08966273
Contributors: Taniguchi, M.; Carreira, M.B.; Cooper, Y.A.; Bobadilla, A.-C.; Heinsbroek, J.A.; Koike, N.; Larson, E.B.; Balmuth, E.A.; Hughes, B.W.; Penrod, R.D. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Uv-RNA immunoprecipitation (Uv-rip) protocol in neurons

Methods in Molecular Biology
2017 | Book chapter
EID:

2-s2.0-84988892040

Part of ISSN: 10643745
Contributors: Schaukowitch, K.; Joo, J.-Y.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Diverse regulatory interactions of long noncoding RNAs

Current Opinion in Genetics and Development
2016 | Journal article
EID:

2-s2.0-84966264061

Part of ISSN: 18790380 0959437X
Contributors: Kim, T.-K.; Shiekhattar, R.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Erratum: Stimulus-specific combinatorial functionality of neuronal c-fos enhancers (Nature Neuroscience (2016) 19 (75-83))

Nature Neuroscience
2016 | Journal article
EID:

2-s2.0-84962339488

Part of ISSN: 15461726 10976256
Contributors: Joo, J.-Y.; Schaukowitch, K.; Farbiak, L.; Kilaru, G.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Architectural and Functional Commonalities between Enhancers and Promoters

Cell
2015 | Journal article
EID:

2-s2.0-84940390239

Part of ISSN: 10974172 00928674
Contributors: Kim, T.-K.; Shiekhattar, R.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

ChIP-seq and RNA-seq methods to study circadian control of transcription in mammals

Methods in Enzymology
2015 | Book chapter
EID:

2-s2.0-84961379599

Part of ISSN: 15577988 00766879
Contributors: Takahashi, J.S.; Kumar, V.; Nakashe, P.; Koike, N.; Huang, H.-C.; Green, C.B.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Enhancer RNAs: A class of long noncoding RNAs synthesized at enhancers

Cold Spring Harbor Perspectives in Biology
2015 | Journal article
EID:

2-s2.0-84920516971

Part of ISSN: 19430264
Contributors: Kim, T.-K.; Hemberg, M.; Gray, J.M.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Genomic views of transcriptional enhancers: Essential determinants of cellular identity and activity-dependent responses in the CNS

Journal of Neuroscience
2015 | Journal article
EID:

2-s2.0-84944621606

Part of ISSN: 15292401 02706474
Contributors: Gray, J.M.; Kim, T.-K.; West, A.E.; Nord, A.S.; Markenscoff-Papadimitriou, E.; Lomvardas, S.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Stimulus-specific combinatorial functionality of neuronal c-fos enhancers

Nature Neuroscience
2015 | Journal article
EID:

2-s2.0-84953840289

Part of ISSN: 15461726 10976256
Contributors: Joo, J.-Y.; Schaukowitch, K.; Farbiak, L.; Kilaru, G.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Emerging epigenetic mechanisms of long non-coding RNAs

Neuroscience
2014 | Journal article
EID:

2-s2.0-84895877010

Part of ISSN: 18737544 03064522
Contributors: Schaukowitch, K.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Enhancer RNA facilitates NELF release from immediate early genes

Molecular Cell
2014 | Journal article
EID:

2-s2.0-84922391291

Part of ISSN: 10974164 10972765
Contributors: Schaukowitch, K.; Joo, J.-Y.; Liu, X.; Watts, J.K.; Martinez, C.; Kim, T.-K.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

SET7/9 methylation of the pluripotency factor LIN28A is a nucleolar localization mechanism that blocks let-7 biogenesis in human ESCs

Cell Stem Cell
2014 | Journal article
EID:

2-s2.0-84919426973

Part of ISSN: 18759777 19345909
Contributors: Kim, S.-K.; Lee, H.; Han, K.; Kim, S.C.; Choi, Y.; Park, S.-W.; Bak, G.; Lee, Y.; Choi, J.K.; Kim, T.-K. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Usf1, a suppressor of the circadian Clock mutant, reveals the nature of the DNA-binding of the CLOCK:BMAL1 complex in mice

eLife
2013 | Journal article
EID:

2-s2.0-84879068462

Part of ISSN: 2050084X
Contributors: Shimomura, K.; Kumar, V.; Koike, N.; Kim, T.-K.; Chong, J.; Buhr, E.D.; Whiteley, A.R.; Low, S.S.; Omura, C.; Fenner, D. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Bhlhb5 and Prdm8 Form a Repressor Complex Involved in Neuronal Circuit Assembly

Neuron
2012 | Journal article
EID:

2-s2.0-84863011484

Part of ISSN: 08966273 10974199
Contributors: Ross, S.; McCord, A.; Jung, C.; Atan, D.; Mok, S.; Hemberg, M.; Kim, T.-K.; Salogiannis, J.; Hu, L.; Cohen, S. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Systematic evaluation of factors influencing ChIP-seq fidelity

Nature Methods
2012 | Journal article
EID:

2-s2.0-84861964081

Part of ISSN: 15487091 15487105
Contributors: Chen, Y.; Negre, N.; Li, Q.; Mieczkowska, J.O.; Slattery, M.; Liu, T.; Zhang, Y.; Kim, T.-K.; He, H.H.; Zieba, J. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals

Science
2012 | Journal article
EID:

2-s2.0-84867667011

Part of ISSN: 10959203 00368075
Contributors: Koike, N.; Yoo, S.-H.; Huang, H.-C.; Kumar, V.; Lee, C.; Kim, T.-K.; Takahashi, J.S.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways

PLoS ONE
2010 | Journal article
EID:

2-s2.0-77956285826

Part of ISSN: 19326203
Contributors: Pfenning, A.R.; Kim, T.-K.; Spotts, J.M.; Hemberg, M.; Su, D.; West, A.E.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

The Angelman Syndrome Protein Ube3A Regulates Synapse Development by Ubiquitinating Arc

Cell
2010 | Journal article
EID:

2-s2.0-77649083119

Part of ISSN: 00928674
Contributors: Greer, P.L.; Hanayama, R.; Bloodgood, B.L.; Mardinly, A.R.; Lipton, D.M.; Flavell, S.W.; Kim, T.-K.; Griffith, E.C.; Waldon, Z.; Maehr, R. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Widespread transcription at neuronal activity-regulated enhancers

Nature
2010 | Journal article
EID:

2-s2.0-77952367798

Part of ISSN: 00280836 14764687
Contributors: Kim, T.-K.; Hemberg, M.; Gray, J.M.; Costa, A.M.; Bear, D.M.; Wu, J.; Harmin, D.A.; Laptewicz, M.; Barbara-Haley, K.; Kuersten, S. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

A retrograde neuronal survival response: Target-derived neurotrophins regulate MEF2D and bcl-w

Journal of Neuroscience
2009 | Journal article
EID:

2-s2.0-66249114341

Part of ISSN: 02706474 15292401
Contributors: Pazyra-Murphy, M.F.; Hans, A.; Courchesne, S.L.; Karch, C.; Cosker, K.E.; Heerssen, H.M.; Watson, F.L.; Kim, T.; Greenberg, M.E.; Segal, R.A.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Mef2-mediated transcription of the miR379-410 cluster regulates activity-dependent dendritogenesis by fine-tuning Pumilio2 protein levels

EMBO Journal
2009 | Journal article
EID:

2-s2.0-62649086993

Part of ISSN: 02614189 14602075
Contributors: Fiore, R.; Khudayberdiev, S.; Christensen, M.; Siegel, G.; Flavell, S.W.; Kim, T.-K.; Greenberg, M.E.; Schratt, G.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Activity-dependent regulation of inhibitory synapse development by Npas4

Nature
2008 | Journal article
EID:

2-s2.0-52049102989

Part of ISSN: 14764687 00280836
Contributors: Lin, Y.; Bloodgood, B.L.; Hauser, J.L.; Lapan, A.D.; Koon, A.C.; Kim, T.-K.; Hu, L.S.; Malik, A.N.; Greenberg, M.E.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Genome-Wide Analysis of MEF2 Transcriptional Program Reveals Synaptic Target Genes and Neuronal Activity-Dependent Polyadenylation Site Selection

Neuron
2008 | Journal article
EID:

2-s2.0-57649211993

Part of ISSN: 08966273
Contributors: Flavell, S.W.; Kim, T.-K.; Gray, J.M.; Harmin, D.A.; Hemberg, M.; Hong, E.J.; Markenscoff-Papadimitriou, E.; Bear, D.M.; Greenberg, M.E.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Identifying autism loci and genes by tracing recent shared ancestry

Science
2008 | Journal article
EID:

2-s2.0-47249088331

Part of ISSN: 00368075 10959203
Contributors: Morrow, E.M.; Yoo, S.-Y.; Flavell, S.W.; Kim, T.-K.; Lin, Y.; Hill, R.S.; Mukaddes, N.M.; Balkhy, S.; Gascon, G.; Hashmi, A. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Nature
2007 | Journal article
EID:

2-s2.0-34547624303

Part of ISSN: 00280836 14764679
Contributors: Mikkelsen, T.S.; Ku, M.; Jaffe, D.B.; Issac, B.; Lieberman, E.; Giannoukos, G.; Alvarez, P.; Brockman, W.; Kim, T.-K.; Koche, R.P. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Activity-dependent regulation of MEF2 transcription factors suppresses excitatory synapse number

Science
2006 | Journal article
EID:

2-s2.0-33144467591

Part of ISSN: 00368075
Contributors: Flavell, S.W.; Cowan, C.W.; Kim, T.-K.; Greer, P.L.; Lin, Y.; Paradis, S.; Griffith, E.C.; Hu, L.S.; Chen, C.; Greenberg, M.E.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

START: An automated tool for serial analysis of chromatin occupancy data

Bioinformatics
2006 | Journal article
EID:

2-s2.0-33645834108

Part of ISSN: 13674803 14602059
Contributors: Marinescu, V.D.; Kohane, I.S.; Kim, T.-K.; Harmin, D.A.; Greenberg, M.E.; Riva, A.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

PARP-1 determines specificity in a retinoid signaling pathway via direct modulation of mediator

Molecular Cell
2005 | Journal article
EID:

2-s2.0-20144389926

Part of ISSN: 10972765
Contributors: Pavri, R.; Lewis, B.; Kim, T.-K.; Dilworth, F.J.; Erdjument-Bromage, H.; Tempst, P.; De Murcia, G.; Evans, R.; Chambon, P.; Reinberg, D.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

A downstream element in the human β-globin promoter: Evidence of extended sequence-specific transcription factor IID contacts

Proceedings of the National Academy of Sciences of the United States of America
2000 | Journal article
EID:

2-s2.0-0034691081

Part of ISSN: 00278424
Contributors: Lewis, B.A.; Kim, T.-K.; Orkin, S.H.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Mechanism of ATP-dependent promoter melting by transcription factor IIH

Science
2000 | Journal article
EID:

2-s2.0-0034717308

Part of ISSN: 00368075
Contributors: Kim, T.-K.; Ebright, R.H.; Reinberg, D.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

A protein phosphatase functions to recycle RNA polymerase II

Genes and Development
1999 | Journal article
EID:

2-s2.0-0033564705

Part of ISSN: 08909369
Contributors: Cho, H.; Kim, T.-K.; Mancebo, H.; Lane, W.S.; Flores, O.; Reinberg, D.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

The RNA polymerase II general transcription factors: Past, present, and future

Cold Spring Harbor Symposia on Quantitative Biology
1998 | Book
EID:

2-s2.0-0032450480

Part of ISSN: 00917451
Contributors: Reinberg, D.; Orphanides, G.; Ebright, R.; Akoulitchev, S.; Carcamo, J.; Cho, H.; Cortes, P.; Drapkin, R.; Flores, O.; Ha, I. et al.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Trajectory of DNA in the RNA polymerase II transcription preinitiation complex

Proceedings of the National Academy of Sciences of the United States of America
1997 | Journal article
EID:

2-s2.0-0030730281

Part of ISSN: 00278424
Contributors: Kim, T.-K.; Lagrange, T.; Wang, Y.-H.; Griffith, J.D.; Reinberg, D.; Ebright, R.H.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA photocrosslinking: Organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex

Proceedings of the National Academy of Sciences of the United States of America
1996 | Journal article
EID:

2-s2.0-0029785839

Part of ISSN: 00278424
Contributors: Lagrange, T.; Kim, T.-K.; Orphanides, G.; Ebright, Y.W.; Ebricht, R.H.; Reinberg, D.
Source: Self-asserted source
Tae-Kyung Kim via Scopus - Elsevier

Peer review (24 reviews for 11 publications/grants)

Review activity for Advanced science. (3)
Review activity for Applied biological chemistry. (2)
Review activity for Cell reports. (1)
Review activity for Experimental and molecular medicine (5)
Review activity for Genes & genomics. (1)
Review activity for Genes and genomics. (2)
Review activity for Molecular cell. (3)
Review activity for Nature communications (4)
Review activity for Nature neuroscience. (1)
Review activity for Neuropsychopharmacology. (1)
Review activity for Nucleic acids research. (1)