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Biography

Hi There! My name is Jared Galloway.

Currently, I'm a data engineer at the Fred Hutchinson Cancer Center in Seattle, WA (though I work remotely in Bozeman, MT). I love to make complex (and sometimes quite niche) software which, to the relevant community of researchers, feels simple and offers insight into novel and exciting datasets.

The data-driven and scientific nature of this software entails collaborating with wet-labs who are producing novel and exciting datasets. By getting to know the data at the level of the protocols underlying them, I can then employ computational methods to discern real signal from artifacts and noise.

Activities

Employment (1)

Fred Hutch Cancer Center: Seattle, WA, US

2020-03-01 to present | Bioinformatician / Researcher (Public Health Sciences Division)
Employment
Source: Self-asserted source
Jared Galloway

Education and qualifications (2)

University of Oregon: Eugene, OR, US

2018-09-01 to 2020-01-01 | Master of Science (Biology)
Education
Source: Self-asserted source
Jared Galloway

University of Oregon: Eugene, OR, US

2013-09-01 to 2017-06-01 | Bachelor of Science with Honors (Computer and Information Science)
Education
Source: Self-asserted source
Jared Galloway

Works (19)

Clonal interference and changing selective pressures shape the escape of SARS-CoV-2 from hundreds of antibodies

2025-01-24 | Preprint
Contributors: Hugh K Haddox; Omar Abdel Aziz; Jared G Galloway; Javen Kent; Cameron R Cooper; Jesse D Bloom; Frederick A Matsen
Source: check_circle
Crossref

The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure

2025-01-08 | Preprint
Contributors: Hugh K. Haddox; Georg Angehrn; Luca Sesta; Chris Jennings-Shaffer; Seth D. Temple; Jared G. Galloway; William S. DeWitt; Jesse D. Bloom; Frederick A. Matsen, IV; Richard A. Neher
Source: check_circle
Crossref

Deep mutational scanning reveals functional constraints and antigenic variability of Lassa virus glycoprotein complex

2024-02-06 | Preprint
Contributors: Caleb R. Carr; Katharine H. D. Crawford; Michael Murphy; Jared G. Galloway; Hugh K. Haddox; Frederick A. Matsen, IV; Kristian G. Andersen; Neil P. King; Jesse D. Bloom
Source: check_circle
Crossref

Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin

2023-12-12 | Preprint
Contributors: Frances C. Welsh; Rachel T. Eguia; Juhye Lee; Hugh Haddox; Jared Galloway; Nguyen Van Vinh Chau; Andrea Loes; John Huddleston; Timothy C. Yu; Mai Quynh Le et al.
Source: Self-asserted source
Jared Galloway

Deep mutational scanning of CYP2C19 reveals a substrate specificity-abundance tradeoff

2023-10-08 | Preprint
Contributors: Gabriel E. Boyle; Katherine Sitko; Jared G. Galloway; Hugh K. Haddox; Aisha Haley Bianchi; Ajeya Dixon; Raine E. S. Thomson; Riddhiman K. Garge; Allan E. Rettie; Alan Rubin et al.
Source: check_circle
Crossref

phippery: a software suite for PhIP-Seq data analysis

Bioinformatics
2023-10-03 | Journal article
Contributors: Jared G Galloway; Kevin Sung; Samuel S Minot; Meghan E Garrett; Caitlin I Stoddard; Alexandra C Willcox; Zak A Yaffe; Ryan Yucha; Julie Overbaugh; Frederick A Matsen, IV et al.
Source: check_circle
Crossref

Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers

Nature Communications
2023-08-11 | Journal article
Contributors: Caitlin I. Stoddard; Kevin Sung; Zak A. Yaffe; Haidyn Weight; Guillaume Beaudoin-Bussières; Jared Galloway; Soren Gantt; Judith Adhiambo; Emily R. Begnel; Ednah Ojee et al.
Source: check_circle
Crossref

Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs

2023-08-02 | Preprint
Contributors: Hugh K. Haddox; Jared G. Galloway; Bernadeta Dadonaite; Jesse D. Bloom; Frederick A. Matsen, IV; William S. DeWitt
Source: check_circle
Crossref

Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation

Genome Biology and Evolution
2023-06-01 | Journal article | Software
Part of ISSN: 1759-6653
Contributors: Mathieu Fourment; Christiaan J Swanepoel; Jared G Galloway; Xiang Ji; Karthik Gangavarapu; Marc Suchard; Frederick Matsen IV; Jared Galloway
Source: Self-asserted source
Jared Galloway

Detailed analysis of antibody responses to SARS-CoV-2 vaccination and infection in macaques

PLOS Pathogens
2022-04-11 | Journal article | Software
Part of ISSN: 1553-7374
Contributors: Alexandra Willcox; Kevin Sung; Meghan E. Garrett; Jared G. Galloway; Jesse H. Erasmus; Jennifer K. Logue; David W. Hawman; Helen Y. Chu; Kim J. Hasenkrug; Deborah H. Fuller et al.
Source: Self-asserted source
Jared Galloway

Efficient ancestry and mutation simulation with msprime 1.0

Genetics
2022-03-03 | Journal article
Contributors: Franz Baumdicker; Gertjan Bisschop; Daniel Goldstein; Graham Gower; Aaron P Ragsdale; Georgia Tsambos; Sha Zhu; Bjarki Eldon; E Castedo Ellerman; Jared G Galloway et al.
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection

eLife
2022-01-24 | Journal article | Formal analysis, Methodology, Software
Part of ISSN: 2050-084X
Contributors: Meghan E Garrett; Jared G Galloway; Caitlin Wolf; Jennifer K Logue; Nicholas Franko; Helen Y Chu; Frederick Matsen IV; Julie Overbaugh; Jared Galloway
Source: Self-asserted source
Jared Galloway

SARS-CoV-2 Antibody Binding and Neutralization in Dried Blood Spot Eluates and Paired Plasma

Microbiology Spectrum
2021-10-31 | Journal article | Formal analysis, Software
Part of ISSN: 2165-0497
Contributors: Hannah L. Itell; Haidyn Weight; Carolyn S. Fish; Jennifer K. Logue; Nicholas Franko; Caitlin R. Wolf; Denise J. McCulloch; Jared Galloway; Frederick A. Matsen; Helen Y. Chu et al.
Source: Self-asserted source
Jared Galloway

Epitope profiling reveals binding signatures of SARS-CoV-2 immune response in natural infection and cross-reactivity with endemic human CoVs

Cell Reports
2021-05 | Journal article | Data curation, Methodology, Software
Part of ISSN: 2211-1247
Contributors: Caitlin I. Stoddard; Jared Galloway; Helen Y. Chu; Mackenzie S. Kopp; Kevin Sung; Hannah L. Itell; Caitlin R. Wolf; Jennifer Logue; Ariana Magedson; Meghan E. Garrett et al.
Source: Self-asserted source
Jared Galloway

High-resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies

Cell
2021-05 | Journal article | Formal analysis, Software
Part of ISSN: 0092-8674
Contributors: Meghan E. Garrett; Jared Galloway; Helen Y. Chu; Hannah Itell; Caitlin I. Stoddard; Caitlin R. Wolf; Jennifer Logue; Dylan McDonald; Haidyn Weight; Frederick Matsen IV et al.
Source: Self-asserted source
Jared Galloway

A community-maintained standard library of population genetic models

eLife
2020-06-23 | Journal article | Data curation, Formal analysis
Part of ISSN: 2050-084X
Contributors: Jeffrey Adrion; Christopher B. Cole; Noah Dukler; Jared G Galloway; Ariella Gladstein; Graham Gower; Christopher Kyriazis; Aaron Ragsdale; Georgia Tsambos; Franz Baumdicker et al.
Source: Self-asserted source
Jared Galloway

Predicting the Landscape of Recombination Using Deep Learning

Molecular Biology and Evolution
2020-06-01 | Journal article | Software, Conceptualization, Data curation, Formal analysis
Part of ISSN: 0737-4038
Part of ISSN: 1537-1719
Contributors: Jeffrey R Adrion; Jared G Galloway; Andrew Kern; Jared Galloway
Source: Self-asserted source
Jared Galloway

A Few Stickleback Suffice for the Transport of Alleles to New Lakes

G3 Genes|Genomes|Genetics
2020-02-01 | Journal article | Conceptualization, Data curation, Formal analysis, Methodology, Software
Part of ISSN: 2160-1836
Contributors: Jared Galloway; William Cresko; Peter Ralph; Jared Galloway
Source: Self-asserted source
Jared Galloway

Tree‐sequence recording in SLiM opens new horizons for forward‐time simulation of whole genomes

Molecular Ecology Resources
2019-03 | Journal article | Data curation, Software, Formal analysis
Part of ISSN: 1755-098X
Part of ISSN: 1755-0998
Contributors: Benjamin C. Haller; Jared Galloway; Jerome Kelleher; Philipp Messer; Peter Ralph; Jared Galloway
Source: Self-asserted source
Jared Galloway