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Employment (5)

Karolinska University Hospital: Stockholm, SE

(Clinical Epidemiology)
Employment
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Karolinska Institutet

Karolinska Institutet: Stockholm, SE

(Department of Medicine, Solna)
Employment
Source: check_circle
Karolinska Institutet

Karolinska Institutet: Stockholm, SE

(Department of Medicine, Solna)
Employment
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Karolinska Institutet

Chiesi Pharma AB: Stockholm, SE

2022-02 to present | Translational and Precision Medicine Lead (Global Clinical Development)
Employment
Source: Self-asserted source
Francesco Marabita

National Institute of Molecular Genetics (INGM): Milano, IT

2008 to 2011 | PhD fellow
Employment
Source: Self-asserted source
Francesco Marabita

Education and qualifications (2)

University of Milano Bicocca: Milano, IT

2008 to 2011 | PhD in Translational and Molecular Medicine
Education
Source: Self-asserted source
Francesco Marabita

University of Bologna: Bologna, IT

2005 to 2007 | MSc in Pharmaceutical Biotechnology
Education
Source: Self-asserted source
Francesco Marabita

Works (38)

Subcellular mapping of the protein landscape of SARS-CoV-2 infected cells for target-centric drug repurposing

2022-03-29 | Preprint
Contributors: Jayasankar Mohanakrishnan Kaimal; Marianna Tampere; Trang H. Le; Ulrika Axelsson; Hao Xu; Hanna Axelsson; Anna Bäckström; Francesco Marabita; Elisabeth Moussaud-Lamodière; Duncan Njenda et al.
Source: check_circle
Crossref

Multiomics and digital monitoring during lifestyle changes reveal independent dimensions of human biology and health

Cell Syst
2021 | Journal article
SOURCE-WORK-ID:

234856119

Contributors: Marabita, F; James, T; Karhu, A; Virtanen, H; Kettunen, K; Stenlund, H; Boulund, F; Hellström, C; Neiman, M; Mills, R et al.
Source: check_circle
Karolinska Institutet
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nat. Commun.
2019 | Journal article
SOURCE-WORK-ID:

141113030

Contributors: Menden, MP; Wang, D; Mason, MJ; Szalai, B; Bulusu, KC; Guan, YF; Yu, T; Kang, J; Jeon, M; Wolfinger, R et al.
Source: check_circle
Karolinska Institutet

STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse

Scientific Data
2019-10-31 | Journal article
Contributors: David Gomez-Cabrero; Sonia Tarazona; Isabel Ferreirós-Vidal; Ricardo N. Ramirez; Carlos Company; Andreas Schmidt; Theo Reijmers; Veronica von Saint Paul; Francesco Marabita; Javier Rodríguez-Ubreva et al.
Source: check_circle
Crossref
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Different epigenetic clocks reflect distinct pathophysiological features of multiple sclerosis

Epigenomics
2019-09 | Journal article
Contributors: Eleftheria Theodoropoulou; Lars Alfredsson; Fredrik Piehl; Francesco Marabita; Maja Jagodic
Source: check_circle
Crossref
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Author Correction: Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship

Sci Rep
2018 | Journal article
SOURCE-WORK-ID:

137804208

Contributors: Marabita, F; Almgren, M; Sjöholm, LK; Kular, L; Liu, Y; James, T; Kiss, NB; Feinberg, AP; Olsson, T; Kockum, I et al.
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Karolinska Institutet
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Network modules uncover mechanisms of skeletal muscle dysfunction in COPD patients

J Transl Med
2018 | Journal article
SOURCE-WORK-ID:

137705045

Contributors: Tényi, Á; Cano, I; Marabita, F; Kiani, N; Kalko, SG; Barreiro, E; de Atauri, P; Cascante, M; Gomez-Cabrero, D; Roca, J
Source: check_circle
Karolinska Institutet

Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3

BMC Biol.
2018 | Journal article
SOURCE-WORK-ID:

138192626

Contributors: Schmidt, A; Marabita, F; Kiani, NA; Gross, CC; Johansson, HJ; Éliás, S; Rautio, S; Eriksson, M; Fernandes, SJ; Silberberg, G et al.
Source: check_circle
Karolinska Institutet

DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis

Nature Communications
2018-06-19 | Journal article
Contributors: Lara Kular; Yun Liu; Sabrina Ruhrmann; Galina Zheleznyakova; Francesco Marabita; David Gomez-Cabrero; Tojo James; Ewoud Ewing; Magdalena Lindén; Bartosz Górnikiewicz et al.
Source: check_circle
Crossref
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Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology (vol 5, pg 168, 2017)

Cell Syst.
2017 | Journal article
SOURCE-WORK-ID:

137344703

Contributors: Gomez-Cabrero, D; Marabita, F; Tarazona, S; Cano, I; Roca, J; Conesa, A; Sabatier, P; Tegner, J
Source: check_circle
Karolinska Institutet

Phosphoproteomics Reveals Regulatory T Cell-Mediated DEF6 Dephosphorylation That Affects Cytokine Expression in Human Conventional T Cells

Front Immunol
2017 | Journal article
SOURCE-WORK-ID:

136666851

Contributors: Joshi, RN; Binai, NA; Marabita, F; Sui, Z; Altman, A; Heck, AJR; Tegnér, J; Schmidt, A
Source: check_circle
Karolinska Institutet

Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship

Scientific Reports
2017-11-06 | Journal article
Contributors: Francesco Marabita; Malin Almgren; Louise K. Sjöholm; Lara Kular; Yun Liu; Tojo James; Nimrod B. Kiss; Andrew P. Feinberg; Tomas Olsson; Ingrid Kockum et al.
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Crossref
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An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

2017-09-07 | Preprint
Contributors: Hector Zenil; Narsis A. Kiani; Francesco Marabita; Yue Deng; Szabolcs Elias; Angelika Schmidt; Gordon Ball; Jesper Tegnér
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Crossref
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Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology

Cell Systems
2017-08 | Journal article
Contributors: David Gomez-Cabrero; Francesco Marabita; Sonia Tarazona; Isaac Cano; Josep Roca; Ana Conesa; Philippe Sabatier; Jesper Tegnér
Source: Self-asserted source
Francesco Marabita via Crossref Metadata Search
grade
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Epigenetic research in Multiple Sclerosis: progress, challenges and opportunities

Physiological Genomics
2017-07 | Journal article
Contributors: Galina Zheleznyakova; Eliane Piket; Francesco Marabita; Majid Pahlevan Kakhki; Ewoud Ewing; Sabrina Ruhrmann; Maria Needhamsen; Maja Jagodic; Lara Kular
Source: Self-asserted source
Francesco Marabita via Crossref Metadata Search
grade
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Comprehensive mapping of the effects of azacitidine on DNA methylation, repressive/permissive histone marks and gene expression in primary cells from patients with MDS and MDS-related disease

Oncotarget
2017-04 | Journal article
Contributors: Magnus Tobiasson; Hani Abdulkadir; Andreas Lennartsson; Shintaro Katayama; Francesco Marabita; Ayla De Paepe; Mohsen Karimi; Kaarel Krjutskov; Elisabet Einarsdottir; Michael Grövdal et al.
Source: Self-asserted source
Francesco Marabita via Crossref Metadata Search
grade
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Expression of Transient Receptor Potential Channels in the Purified Human Pancreatic β-Cells

Pancreas
2017-01 | Journal article
Contributors: Francesco Marabita; Md. Shahidul Islam
Source: Self-asserted source
Francesco Marabita via Crossref Metadata Search
grade
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Human regulatory T cells rapidly rewire the phosphoproteome of suppressed conventional T cells

Scand. J. Immunol.
2016 | Conference abstract
SOURCE-WORK-ID:

133477116

Contributors: Joshi, RN; Binai, N; Marabita, F; Tegner, J; Schmidt, A
Source: check_circle
Karolinska Institutet

Integrative molecular profiling during human induced regulatory T cell (iTreg) generation reveals novel regulators of FOXP3

Scand. J. Immunol.
2016 | Conference abstract
SOURCE-WORK-ID:

133477063

Contributors: Schmidt, A; Marabita, F; Johansson, H; Lehtio, J; Eriksson, M; Elias, S; Gomez-Cabrero, D; Rao, A; Tegner, J
Source: check_circle
Karolinska Institutet

Serum microRNAs as novel biomarkers for primary sclerosing cholangitis and cholangiocarcinoma

Clin. Exp. Immunol.
2016 | Journal article
SOURCE-WORK-ID:

133858407

Contributors: Bernuzzi, F; Marabita, F; Lleo, A; Carbone, M; Mirolo, M; Marzioni, M; Alpini, G; Alvaro, D; Boberg, KM; Locati, M et al.
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Karolinska Institutet

Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women

Archives of Toxicology
2016-11 | Journal article
Contributors: Karin Engström; Tomasz K. Wojdacz; Francesco Marabita; Philip Ewels; Max Käller; Francesco Vezzi; Nicola Prezza; Joel Gruselius; Marie Vahter; Karin Broberg
Source: Self-asserted source
Francesco Marabita via Crossref Metadata Search
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Differentially Expressed Plasma miRNAs as Novel Biomarkers for the Early Detection of Primary Sclerosing Cholangitis and Cholangiocarcinoma

Hepatology
2015 | Conference abstract
SOURCE-WORK-ID:

132816070

Contributors: Bernuzzi, F; Marabita, F; Lleo, A; Bianchi, I; Mirolo, M; Marzioni, M; Alpini, G; Alvaro, D; Boberg, KM; Locati, M et al.
Source: check_circle
Karolinska Institutet

IN VITRO AZACITIDINE CULTURE INDUCES DNA DEMETHYLATION AND INCREASED MRNA-LEVELS IN PRIMARY MDS PROGENITOR CELLS

Leuk. Res.
2015 | Conference abstract
SOURCE-WORK-ID:

133313128

Contributors: Abdulkadir, H; Tobiasson, M; Lennartsson, A; Katayama, S; Marabita, F; Karimi, M; Qu, Y; Einarsdottir, E; Govdal, M; Jansson, M et al.
Source: check_circle
Karolinska Institutet

Introduction to Data Types in Epigenomics

Computational and Statistical Epigenomics
2015 | Other
Contributors: Francesco Marabita; Jesper Tegnér; David Gomez-Cabrero
Source: Self-asserted source
Francesco Marabita via Crossref Metadata Search

Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR

Briefings in Bioinformatics
2015-08-03 | Journal article
Contributors: Francesco Marabita; Paola de Candia; Anna Torri; Jesper Tegnér; Sergio Abrignani; Riccardo L. Rossi
Source: Self-asserted source
Francesco Marabita via Crossref Metadata Search
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Interaction between PNPLA3 I148M variant and age at infection in determining fibrosis progression in chronic hepatitis C.

2014 | Journal article
DOI:

10.1371/journal.pone.0106022

PMID:

25171251

PMC:

PMC4149487

Contributors: De Nicola S; Dongiovanni P; Aghemo A; Cheroni C; D'Ambrosio R; Pedrazzini M; Marabita F; Donnici L; Maggioni M; Fargion S et al.
Source: Self-asserted source
Francesco Marabita via Europe PubMed Central
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An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training.

2014-12 | Journal article
DOI:

10.4161/15592294.2014.982445

PMID:

25484259

Contributors: Lindholm ME; Marabita F; Gomez-Cabrero D; Rundqvist H; Ekström TJ; Tegnér J; Sundberg CJ
Source: Self-asserted source
Francesco Marabita via Europe PubMed Central
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Systems Medicine: from molecular features and models to the clinic in COPD.

2014-11 | Journal article
DOI:

10.1186/1479-5876-12-S2-S4

PMID:

25471042

PMC:

PMC4255907

Contributors: Gomez-Cabrero D; Menche J; Cano I; Abugessaisa I; Huertas-Migueláñez M; Tenyi A; Marin de Mas I; Kiani NA; Marabita F; Falciani F et al.
Source: Self-asserted source
Francesco Marabita via Europe PubMed Central
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A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data

2013 | Journal article
DOI:

10.1093/bioinformatics/bts680

EID:

2-s2.0-84872564830

Contributors: Teschendorff, A.E.; Marabita, F.; Lechner, M.; Bartlett, T.; Tegner, J.; Gomez-Cabrero, D.; Beck, S.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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An evaluation of analysis pipelines for DNA methylation profiling using the illumina humanmethylation450 BeadChip platform

2013 | Journal article
DOI:

10.4161/epi.24008

EID:

2-s2.0-84875737335

Contributors: Marabita, F.; Almgren, M.; Lindholm, M.E.; Ruhrmann, S.; Fagerström-Billai, F.; Jagodic, M.; Sundberg, C.J.; Ekström, T.J.; Teschendorff, A.E.; Tegnér, J. et al.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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Identification of serum and tissue micro-RNA expression profiles in different stages of inflammatory bowel disease

2013 | Journal article
DOI:

10.1111/cei.12104

EID:

2-s2.0-84880008053

Contributors: Iborra, M.; Bernuzzi, F.; Correale, C.; Vetrano, S.; Fiorino, G.; Beltrán, B.; Marabita, F.; Locati, M.; Spinelli, A.; Nos, P. et al.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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Intracellular Modulation, Extracellular Disposal and Serum Increase of MiR-150 Mark Lymphocyte Activation

2013 | Journal article
DOI:

10.1371/journal.pone.0075348

EID:

2-s2.0-84884658821

Contributors: de Candia, P.; Torri, A.; Gorletta, T.; Fedeli, M.; Bulgheroni, E.; Cheroni, C.; Marabita, F.; Crosti, M.; Moro, M.; Pariani, E. et al.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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Network Biology Empowering Detection and Understanding of Interactions Between Genetic Factors in Development of Complex Phenotypes

2013 | Book
DOI:

10.1016/B978-0-12-397017-6.00010-6

EID:

2-s2.0-84904144590

Contributors: Tegne'r, J.; Marabita, F.; Gomez-Cabrero, D.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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Identification of new autoantigens by protein array indicates a role for IL4 neutralization in autoimmune hepatitis

2012 | Journal article
DOI:

10.1074/mcp.M112.018713

EID:

2-s2.0-84870713369

Contributors: Zingaretti, C.; Arigò, M.; Cardaci, A.; Moro, M.; Crosti, M.; Sinisi, A.; Sugliano, E.; Cheroni, C.; Marabita, F.; Nogarotto, R. et al.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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Distinct microRNA signatures in human lymphocyte subsets and enforcement of the naive state in CD4+ T cells by the microRNA miR-125b

2011 | Journal article
DOI:

10.1038/ni.2057

EID:

2-s2.0-80052035077

Contributors: Rossi, R.L.; Rossetti, G.; Wenandy, L.; Curti, S.; Ripamonti, A.; Bonnal, R.J.P.; Birolo, R.S.; Moro, M.; Crosti, M.C.; Gruarin, P. et al.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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Fibrosis progression in patients with chronic hepatitis C is not influenced by IL28B polymorphisms

Dig. Liver Dis.
2011 | Conference abstract
SOURCE-WORK-ID:

123072696

Contributors: Aghemo, A; Marabita, F; De Nicola, S; Rumi, MG; Cheroni, C; Scavelli, R; Crimi, M; Soffredini, R; Abrignani, S; De Francesco, R et al.
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Karolinska Institutet

FIBROSIS PROGRESSION IN PATIENTS WITH CHRONIC HEPATITIS C IS NOT INFLUENCED BY IL28B POLYMORPHISMS

J. Hepatol.
2011 | Conference abstract
SOURCE-WORK-ID:

123649291

Contributors: Aghemo, A; Marabita, F; De Nicola, S; Rumi, MG; Cheroni, C; Scavelli, R; Crimi, M; Soffredini, R; Abrignani, S; De Francesco, R et al.
Source: check_circle
Karolinska Institutet

Genetic variation in the interleukin-28B gene is not associated with fibrosis progression in patients with chronic hepatitis C and known date of infection

2011 | Journal article
DOI:

10.1002/hep.24503

EID:

2-s2.0-80053308776

Contributors: Marabita, F.; Aghemo, A.; de Nicola, S.; Rumi, M.G.; Cheroni, C.; Scavelli, R.; Crimi, M.; Soffredini, R.; Abrignani, S.; de Francesco, R. et al.
Source: Self-asserted source
Francesco Marabita via Scopus - Elsevier
grade
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