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ResearcherID: B-2066-2012

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University of Electronic Science and Technolog of China: Chengdu, CN

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Hao Lin

Works (50 of 138)

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Conotoxins: Classification, Prediction, and Future Directions in Bioinformatics

Toxins
2025-02-09 | Journal article
DOI: 10.3390/toxins17020078
Contributors: Rui Li; Junwen Yu; Dongxin Ye; Shanghua Liu; Hongqi Zhang; Hao Lin; Juan Feng; Kejun Deng
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Crossref
grade
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Exploring Coding Sequence Length Distributions Across Taxonomic Kingdoms Based on Maximum Information Principle

Current Bioinformatics
2025-01-30 | Journal article
DOI: 10.2174/0115748936355149250108083111
Contributors: Sebu Aboma Temesgen; Bakanina Kissanga Grace-Mercure; Basharat Ahmad; Yan-Ting Jin; Li Liu; Hao Lin
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Crossref

SAGESDA: Multi-GraphSAGE networks for predicting SnoRNA-disease associations

Current Research in Structural Biology
2024 | Journal article
DOI: 10.1016/j.crstbi.2023.100122
Contributors: Biffon Manyura Momanyi; Yu-Wei Zhou; Bakanina Kissanga Grace-Mercure; Sebu Aboma Temesgen; Ahmad Basharat; Lin Ning; Lixia Tang; Hui Gao; Hao Lin; Hua Tang
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Crossref

Detecting key genes relative expression orderings as biomarkers for machine learning-based intelligent screening and analysis of type 2 diabetes mellitus

Expert Systems with Applications
2024-12 | Journal article
DOI: 10.1016/j.eswa.2024.124702
Contributors: Xueqin Xie; Changchun Wu; Caiyi Ma; Dong Gao; Wei Su; Jian Huang; Kejun Deng; Dan Yan; Hao Lin
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Crossref

Excavation of gene markers associated with pancreatic ductal adenocarcinoma based on interrelationships of gene expression

IET Systems Biology
2024-12 | Journal article
DOI: 10.1049/syb2.12090
Contributors: Zhao‐Yue Zhang; Zi‐Jie Sun; Dong Gao; Yu‐Duo Hao; Hao Lin; Fen Liu
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Crossref

Empirical Comparison and Analysis of Artificial Intelligence-Based Methods for Identifying Phosphorylation Sites of SARS-CoV-2 Infection

International Journal of Molecular Sciences
2024-12-21 | Journal article
DOI: 10.3390/ijms252413674
Contributors: Hongyan Lai; Tao Zhu; Sijia Xie; Xinwei Luo; Feitong Hong; Diyu Luo; Fuying Dao; Hao Lin; Kunxian Shu; Hao Lv
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Identification of RNA‐dependent liquid‐liquid phase separation proteins using an artificial intelligence strategy

PROTEOMICS
2024-11 | Journal article
DOI: 10.1002/pmic.202400044
Contributors: Zahoor Ahmed; Kiran Shahzadi; Yanting Jin; Rui Li; Biffon Manyura Momanyi; Hasan Zulfiqar; Lin Ning; Hao Lin
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Crossref

Identification of DNase I hypersensitive sites in the human genome by multiple sequence descriptors

Methods
2024-09 | Journal article
DOI: 10.1016/j.ymeth.2024.06.012
Contributors: Yan-Ting Jin; Yang Tan; Zhong-Hua Gan; Yu-Duo Hao; Tian-Yu Wang; Hao Lin; Bo Tang
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Crossref

Research on Bitter Peptides in the Field of Bioinformatics: A Comprehensive Review

International Journal of Molecular Sciences
2024-09 | Journal article | Author
DOI: 10.3390/ijms25189844
Contributors: Shanghua Liu; Tianyu Shi; Junwen Yu; Rui Li; Hao Lin; kejun
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Multidisciplinary Digital Publishing Institute

Predicting the role of the human gut microbiome in type 1 diabetes using machine-learning methods

Briefings in Functional Genomics
2024-07-19 | Journal article
DOI: 10.1093/bfgp/elae004
Contributors: Xiao-Wei Liu; Han-Lin Li; Cai-Yi Ma; Tian-Yu Shi; Tian-Yu Wang; Dan Yan; Hua Tang; Hao Lin; Ke-Jun Deng
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Crossref

CodLncScape Provides a Self‐Enriching Framework for the Systematic Collection and Exploration of Coding LncRNAs

Advanced Science
2024-06 | Journal article
DOI: 10.1002/advs.202400009
Contributors: Tianyuan Liu; Huiyuan Qiao; Zixu Wang; Xinyan Yang; Xianrun Pan; Yu Yang; Xiucai Ye; Tetsuya Sakurai; Hao Lin; Yang Zhang
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Crossref

Urbanisation drives inter‐ and intraspecific variation in flight‐related morphological traits of aquatic insects at different landscape scales

Insect Conservation and Diversity
2024-03 | Journal article
DOI: 10.1111/icad.12703
Contributors: Wenfei Liao; Hao Lin
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Crossref

E-MuLA: An Ensemble Multi-Localized Attention Feature Extraction Network for Viral Protein Subcellular Localization

Information
2024-03-13 | Journal article
DOI: 10.3390/info15030163
Contributors: Grace-Mercure Bakanina Kissanga; Hasan Zulfiqar; Shenghan Gao; Sophyani Banaamwini Yussif; Biffon Manyura Momanyi; Lin Ning; Hao Lin; Cheng-Bing Huang
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grade
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MIBPred: Ensemble Learning-Based Metal Ion-Binding Protein Classifier

ACS Omega
2024-02-08 | Journal article
DOI: 10.1021/acsomega.3c09587
Contributors: Hong-Qi Zhang; Shang-Hua Liu; Rui Li; Jun-Wen Yu; Dong-Xin Ye; Shi-Shi Yuan; Hao Lin; Cheng-Bing Huang; Hua Tang
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Crossref

Empirical comparison and recent advances of computational prediction of hormone binding proteins using machine learning methods

Computational and Structural Biotechnology Journal
2023 | Journal article
DOI: 10.1016/j.csbj.2023.03.024
Contributors: Hasan Zulfiqar; Zhiling Guo; Bakanina Kissanga Grace-Mercure; Zhao-Yue Zhang; Hui Gao; Hao Lin; Yun Wu
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Crossref

Identification of Key DNA methylation sites related to differentially expressed genes in Lung squamous cell carcinoma

Computers in Biology and Medicine
2023-12 | Journal article
DOI: 10.1016/j.compbiomed.2023.107615
Contributors: Jie Gao; Yongxian Feng; Yan Yang; Yuetong Shi; Junjie Liu; Hao Lin; Lirong Zhang
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Crossref

Attention is all you need: utilizing attention in AI-enabled drug discovery

Briefings in Bioinformatics
2023-11-22 | Journal article
DOI: 10.1093/bib/bbad467
Contributors: Yang Zhang; Caiqi Liu; Mujiexin Liu; Tianyuan Liu; Hao Lin; Cheng-Bing Huang; Lin Ning
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Crossref

iPADD: A Computational Tool for Predicting Potential Antidiabetic Drugs Using Machine Learning Algorithms

Journal of Chemical Information and Modeling
2023-08-14 | Journal article
DOI: 10.1021/acs.jcim.3c00564
Contributors: Xiao-Wei Liu; Tian-Yu Shi; Dong Gao; Cai-Yi Ma; Hao Lin; Dan Yan; Ke-Jun Deng
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Crossref

A First Computational Frame for Recognizing Heparin-Binding Protein

Diagnostics
2023-07-24 | Journal article
DOI: 10.3390/diagnostics13142465
Contributors: Wen Zhu; Shi-Shi Yuan; Jian Li; Cheng-Bing Huang; Hao Lin; Bo Liao
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grade
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Single-cell RNA-seq data analysis based on directed graph neural network

Methods
2023-03 | Journal article
DOI: 10.1016/j.ymeth.2023.02.008
Contributors: Xiang Feng; Hongqi Zhang; Hao Lin; Haixia Long
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Crossref

A comprehensive review of bioinformatics tools for chromatin loop calling

Briefings in Bioinformatics
2023-03-19 | Journal article
DOI: 10.1093/bib/bbad072
Contributors: Li Liu; Kaiyuan Han; Huimin Sun; Lu Han; Dong Gao; Qilemuge Xi; Lirong Zhang; Hao Lin
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Crossref

DeepIDC: A Prediction Framework of Injectable Drug Combination Based on Heterogeneous Information and Deep Learning

Clinical Pharmacokinetics
2022-12 | Journal article
DOI: 10.1007/s40262-022-01180-9
Contributors: Yuhe Yang; Dong Gao; Xueqin Xie; Jiaan Qin; Jian Li; Hao Lin; Dan Yan; Kejun Deng
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Crossref

Analysis and modeling of myopia-related factors based on questionnaire survey

Computers in Biology and Medicine
2022-11 | Journal article
DOI: 10.1016/j.compbiomed.2022.106162
Contributors: Jianqiang Xiao; Mujiexin Liu; Qinlai Huang; Zijie Sun; Lin Ning; Junguo Duan; Siquan Zhu; Jian Huang; Hao Lin; Hui Yang
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Crossref

iLoc-miRNA: extracellular/intracellular miRNA prediction using deep BiLSTM with attention mechanism

Briefings in Bioinformatics
2022-09-20 | Journal article
DOI: 10.1093/bib/bbac395
Contributors: Zhao-Yue Zhang; Lin Ning; Xiucai Ye; Yu-He Yang; Yasunori Futamura; Tetsuya Sakurai; Hao Lin
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Crossref

A Statistical Analysis of the Sequence and Structure of Thermophilic and Non-Thermophilic Proteins

International Journal of Molecular Sciences
2022-09-04 | Journal article
DOI: 10.3390/ijms231710116
Contributors: Zahoor Ahmed; Hasan Zulfiqar; Lixia Tang; Hao Lin
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Transcriptomics and Genomics Analysis Uncover the Differentially Expressed Chlorophyll and Carotenoid-Related Genes in Celery

International Journal of Molecular Sciences
2022-08 | Journal article | Author
DOI: 10.3390/ijms23168986
Contributors: 宋小明; Nan Li; Yingchao Zhang; Yi Liang; Rong Zhou; Tong Yu; Shaoqin Shen; Shuyan Feng; Yu Zhang; Xiuqing Li et al.
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Multidisciplinary Digital Publishing Institute

PSnoD: identifying potential snoRNA-disease associations based on bounded nuclear norm regularization

Briefings in Bioinformatics
2022-07-18 | Journal article
DOI: 10.1093/bib/bbac240
Contributors: Zijie Sun; Qinlai Huang; Yuhe Yang; Shihao Li; Hao Lv; Yang Zhang; Hao Lin; Lin Ning
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Crossref

BDselect: A Package for k-mer Selection Based on the Binomial Distribution

Current Bioinformatics
2022-03 | Journal article
DOI: 10.2174/1574893616666211007102747
Contributors: Fu-Ying Dao; Hao Lv; Zhao-Yue Zhang; Hao Lin
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Crossref

DeepKla: An attention mechanism‐based deep neural network for protein lysine lactylation site prediction

iMeta
2022-03 | Journal article
DOI: 10.1002/imt2.11
Contributors: Hao Lv; Fu‐Ying Dao; Hao Lin
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Crossref

Accurate Identification of DNA Replication Origin by Fusing Epigenomics and Chromatin Interaction Information

Research
2022-01 | Journal article
DOI: 10.34133/2022/9780293
Contributors: Fu-Ying Dao; Hao Lv; Melissa J. Fullwood; Hao Lin
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Crossref

Deep-4mCGP: A Deep Learning Approach to Predict 4mC Sites in Geobacter pickeringii by Using Correlation-Based Feature Selection Technique

International Journal of Molecular Sciences
2022-01-23 | Journal article
DOI: 10.3390/ijms23031251
Contributors: Hasan Zulfiqar; Qin-Lai Huang; Hao Lv; Zi-Jie Sun; Fu-Ying Dao; Hao Lin
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A deep learning model to identify gene expression level using cobinding transcription factor signals

Briefings in Bioinformatics
2022-01-17 | Journal article
DOI: 10.1093/bib/bbab501
Contributors: Lirong Zhang; Yanchao Yang; Lu Chai; Qianzhong Li; Junjie Liu; Hao Lin; Li Liu
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Crossref

Detection of transcription factors binding to methylated DNA by deep recurrent neural network

Briefings in Bioinformatics
2022-01-17 | Journal article
DOI: 10.1093/bib/bbab533
Contributors: Hongfei Li; Yue Gong; Yifeng Liu; Hao Lin; Guohua Wang
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Crossref

iRice-MS: An integrated XGBoost model for detecting multitype post-translational modification sites in rice

Briefings in Bioinformatics
2022-01-17 | Journal article
DOI: 10.1093/bib/bbab486
Contributors: Hao Lv; Yang Zhang; Jia-Shu Wang; Shi-Shi Yuan; Zi-Jie Sun; Fu-Ying Dao; Zheng-Xing Guan; Hao Lin; Ke-Jun Deng
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Crossref

EMCBOW-GPCR: A method for identifying G-protein coupled receptors based on word embedding and wordbooks

Computational and Structural Biotechnology Journal
2021 | Journal article
DOI: 10.1016/j.csbj.2021.08.044
Contributors: Wangren Qiu; Zhe Lv; Xuan Xiao; Shuai Shao; Hao Lin
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Crossref

Identification of cyclin protein using gradient boost decision tree algorithm

Computational and Structural Biotechnology Journal
2021 | Journal article
DOI: 10.1016/j.csbj.2021.07.013
Contributors: Hasan Zulfiqar; Shi-Shi Yuan; Qin-Lai Huang; Zi-Jie Sun; Fu-Ying Dao; Xiao-Long Yu; Hao Lin
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Crossref

Identification of Potential Inhibitors Against SARS-CoV-2 Using Computational Drug Repurposing Study

Current Bioinformatics
2021-12-02 | Journal article
DOI: 10.2174/1574893616666210726155903
Contributors: Hasan Zulfiqar; Fu-Ying Dao; Hao Lv; Hui Yang; Peng Zhou; Wei Chen; Hao Lin
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Crossref

Advances in mapping the epigenetic modifications of 5‐methylcytosine (5mC), N6‐methyladenine (6mA), and N4‐methylcytosine (4mC)

Biotechnology and Bioengineering
2021-11 | Journal article
DOI: 10.1002/bit.27911
Contributors: Hao Lv; Fu‐Ying Dao; Dan Zhang; Hui Yang; Hao Lin
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Crossref

iDHS-Deep: an integrated tool for predicting DNase I hypersensitive sites by deep neural network

Briefings in Bioinformatics
2021-09-02 | Journal article
DOI: 10.1093/bib/bbab047
Contributors: Fu-Ying Dao; Hao Lv; Wei Su; Zi-Jie Sun; Qin-Lai Huang; Hao Lin
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Crossref

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism

Nucleic Acids Research
2021-05-07 | Journal article
DOI: 10.1093/nar/gkab016
Contributors: Duolin Wang; Zhaoyue Zhang; Yuexu Jiang; Ziting Mao; Dong Wang; Hao Lin; Dong Xu
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Crossref

iCarPS: a computational tool for identifying protein carbonylation sites by novel encoded features

Bioinformatics
2021-04-19 | Journal article
DOI: 10.1093/bioinformatics/btaa702
Contributors: Dan Zhang; Zhao-Chun Xu; Wei Su; Yu-He Yang; Hao Lv; Hui Yang; Hao Lin; Jinbo Xu
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Crossref

A computational framework for identifying the transcription factors involved in enhancer-promoter loop formation

Molecular Therapy - Nucleic Acids
2021-03 | Journal article
DOI: 10.1016/j.omtn.2020.11.011
Contributors: Li Liu; Li-Rong Zhang; Fu-Ying Dao; Yan-Chao Yang; Hao Lin
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Crossref

A sequence-based deep learning approach to predict CTCF-mediated chromatin loop

Briefings in Bioinformatics
2021-02-25 | Journal article
DOI: 10.1093/bib/bbab031
Contributors: Hao Lv; Fu-Ying Dao; Hasan Zulfiqar; Wei Su; Hui Ding; Li Liu; Hao Lin
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Crossref

Screening of Prospective Plant Compounds as H1R and CL1R Inhibitors and Its Antiallergic Efficacy through Molecular Docking Approach

Computational and Mathematical Methods in Medicine
2021-01-11 | Journal article
DOI: 10.1155/2021/6683407
Contributors: Hasan Zulfiqar; Muhammad Shareef Masoud; Hui Yang; Shu-Guang Han; Cheng-Yan Wu; Hao Lin; Balachandran Manavalan
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Crossref

Recent Advancement in Predicting Subcellular Localization of Mycobacterial Protein with Machine Learning Methods

Medicinal Chemistry
2020-08-07 | Journal article
DOI: 10.2174/1573406415666191004101913
Contributors: Shi-Hao Li; Zheng-Xing Guan; Dan Zhang; Zi-Mei Zhang; Jian Huang; Wuritu Yang; Hao Lin
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Crossref

Computational Identification of Small Interfering RNA Targets in SARS-CoV-2

Virologica Sinica
2020-06-15 | Journal article
DOI: 10.1007/s12250-020-00221-6
Contributors: Wei Chen; Pengmian Feng; Kewei Liu; Meng Wu; Hao Lin
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Crossref

DNA4mC-LIP: a linear integration method to identify N4-methylcytosine site in multiple species

Bioinformatics
2020-06-01 | Journal article
DOI: 10.1093/bioinformatics/btaa143
Contributors: Qiang Tang; Juanjuan Kang; Jiaqing Yuan; Hua Tang; Xianhai Li; Hao Lin; Jian Huang; Wei Chen; Anthony Mathelier
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Crossref

Recent Development of Computational Predicting Bioluminescent Proteins

Current Pharmaceutical Design
2020-01-01 | Journal article
DOI: 10.2174/1381612825666191107100758
Contributors: Dan Zhang; Zheng-Xing Guan; Zi-Mei Zhang; Shi-Hao Li; Fu-Ying Dao; Hua Tang; Hao Lin
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Crossref

Identifying Sigma70 Promoters with Novel Pseudo Nucleotide Composition

IEEE/ACM Transactions on Computational Biology and Bioinformatics
2019-07-01 | Journal article
DOI: 10.1109/TCBB.2017.2666141
Contributors: Hao Lin; Zhi-Yong Liang; Hua Tang; Wei Chen
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Crossref

Identification of Bacteriophage Virion Proteins Using Multinomial Naïve Bayes with g-Gap Feature Tree

International Journal of Molecular Sciences
2018-06 | Journal article
DOI: 10.3390/ijms19061779
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Multidisciplinary Digital Publishing Institute
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Peer review (200 reviews for 39 publications/grants)

Review activity for ACS central science. (1)
Review activity for ACS omega. (15)
Review activity for ACS synthetic biology. (1)
Review activity for Advanced science. (1)
Review activity for Applied intelligence. (3)
Review activity for Biophysical journal. (1)
Review activity for BMC biology. (1)
Review activity for Cell discovery. (2)
Review activity for Cell genomics. (3)
Review activity for Chemical reviews. (1)
Review activity for Chemometrics and intelligent laboratory systems. (3)
Review activity for Computational and Structural Biotechnology Journal (3)
Review activity for Computational biology and chemistry. (9)
Review activity for Computer methods and programs in biomedicine. (3)
Review activity for Computers in biology and medicine. (34)
Review activity for EBioMedicine. (1)
Review activity for Future generation computer systems. (5)
Review activity for Genomics, Proteomics & Bioinformatics. (3)
Review activity for Genomics. (1)
Review activity for GigaScience. (2)
Review activity for Health information science and systems. (2)
Review activity for Heliyon. (3)
Review activity for Intelligent medicine. (1)
Review activity for International journal of biological macromolecules. (16)
Review activity for Journal of agricultural and food chemistry. (3)
Review activity for Journal of chemical information and modeling. (35)
Review activity for Journal of computational science. (2)
Review activity for Journal of critical care. (2)
Review activity for Journal of Molecular Biology. (2)
Review activity for Journal of molecular graphics & modelling. (2)
Review activity for Journal of proteome research. (7)
Review activity for Methods. (20)
Review activity for Molecular biotechnology. (2)
Review activity for Molecular pharmaceutics. (2)
Review activity for Molecular therapy (1)
Review activity for Nature communications (2)
Review activity for PLoS computational biology. (3)
Review activity for Science advances. (1)
Review activity for Virus research (1)
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