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Cenik Lab

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Employment (2)

The University of Texas at Austin: Austin, Texas, US

2018-08 to present | Assistant Professor
Employment
Source: Self-asserted source
Can Cenik

Stanford University: Stanford, CA, US

2012-10 to 2018-08 | Postdoc (Genetics)
Employment
Source: Self-asserted source
Can Cenik

Education and qualifications (2)

Harvard Medical School: Boston, MA, US

2008-09 to 2012-03 | PhD (Genetics/Genomics)
Education
Source: Self-asserted source
Can Cenik

Harvard College: Cambridge, MA, US

2004-09 to 2008-06 | BA (Applied Mathematics)
Education
Source: Self-asserted source
Can Cenik

Funding (4)

Translational regulation of limb bud initiation

2022-08-19 to 2024-07-31 | Grant
Eunice Kennedy Shriver National Institute of Child Health and Human Development (Bethesda, US)
URL: https://app.dimensions.ai/details/grant/grant.12965745
GRANT_NUMBER: R21HD110096
Source: Self-asserted source
Can Cenik via DimensionsWizard

Recruitment of First-Time, Tenure-Track Faculty Members

2018-08-24 to present | Grant
Cancer Prevention and Research Institute of Texas (Austin, US)
URL: https://app.dimensions.ai/details/grant/grant.9425760
GRANT_NUMBER: RR180042
Source: Self-asserted source
Can Cenik via DimensionsWizard

Characterization of recurrent cancer mutations that cause misregulated translation

2016-08-01 to 2022-07-31 | Grant
National Cancer Institute (Bethesda, US)
URL: https://app.dimensions.ai/details/grant/grant.7725675
GRANT_NUMBER: R00CA204522
Source: Self-asserted source
Can Cenik via DimensionsWizard

Characterization of recurrent cancer mutations that cause misregulated translation

Source: Self-asserted source
Can Cenik via DimensionsWizard

Works (26)

Single-cell quantification of ribosome occupancy in early mouse development.

Nature
2023-06-21 | Journal article | Author
DOI: 10.1038/s41586-023-06228-9
PMID: 37344592
PMC: PMC10307641
Contributors: Ozadam H; Tori Tonn; Han CM; Segura A; Hoskins I; Rao S; Ghatpande V; Tran D; Catoe D; Marc Salit et al.
Source: Self-asserted source
Can Cenik

satmut_utils: a simulation and variant calling package for multiplexed assays of variant effect

Genome Biology
2023-04-20 | Journal article
DOI: 10.1186/s13059-023-02922-z
Contributors: Ian Hoskins; Song Sun; Atina Cote; Frederick P. Roth; Can Cenik
Source: check_circle
Crossref

Developing high-affinity decoy receptors to treat multiple myeloma and diffuse large B cell lymphoma

Journal of Experimental Medicine
2022-09-05 | Journal article
DOI: 10.1084/jem.20220214
Contributors: Yu Rebecca Miao; Kaushik Thakkar; Can Cenik; Dadi Jiang; Kazue Mizuno; Chenjun Jia; Caiyun Grace Li; Hongjuan Zhao; Anh Diep; Yu Xu et al.
Source: check_circle
Crossref

Single cell quantification of ribosome occupancy in early mouse development

2021-12-09 | Preprint
DOI: 10.1101/2021.12.07.471408
Contributors: Tori Tonn; Hakan Ozadam; Crystal Han; Alia Segura; Duc Tran; David Catoe; Marc Salit; Can Cenik
Source: check_circle
Crossref

Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein

RNA
2021-09 | Journal article
DOI: 10.1261/rna.078661.120
Contributors: Shilpa Rao; Ian Hoskins; Tori Tonn; P. Daniela Garcia; Hakan Ozadam; Elif Sarinay Cenik; Can Cenik
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Developing High-Affinity Decoy Receptor Optimized for Multiple Myeloma and Diffuse Large B Cell Lymphoma Treatment

2021-05-04 | Preprint
DOI: 10.1101/2021.05.03.442500
Contributors: Yu Rebecca Miao; Kaushik Thakker; Can Cenik; Dadi Jiang; Kazue Mizuno; Chenjun Jia; Caiyun Grace Li; Hongjuan Zhao; Anh Diep; Jimmy Yu Xu et al.
Source: check_circle
Crossref

Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare mendelian disorder

2020-10-23 | Other
DOI: 10.1101/2020.10.22.350884
Contributors: Brendan Panici; Hosei Nakajima; Colleen M. Carlston; Hakan Ozadam; Can Cenik; Elif Sarinay Cenik
Source: check_circle
Crossref

Simultaneous RNA purification and size selection using on-chip isotachophoresis with an ionic spacer

Lab on a Chip
2019 | Journal article
DOI: 10.1039/C9LC00311H
Contributors: Crystal M. Han; David Catoe; Sarah A. Munro; Ruba Khnouf; Michael P. Snyder; Juan G. Santiago; Marc L. Salit; Can Cenik
Source: check_circle
Crossref

RiboFlow, RiboR and RiboPy: An ecosystem for analyzing ribosome profiling data at read length resolution

2019-11-26 | Other
DOI: 10.1101/855445
Contributors: Hakan Ozadam; Michael Geng; Can Cenik
Source: check_circle
Crossref

Plasma sterols and depressive symptom severity in a population-based cohort.

PloS one
2017 | Journal article
DOI: 10.1371/journal.pone.0184382
PMID: 28886149
PMC: PMC5590924
Contributors: Cenik B; Cenik C; Snyder MP; Brown ES
Source: Self-asserted source
Can Cenik via Europe PubMed Central

A common class of transcripts with 5'-intron depletion, distinct early coding sequence features, and N1-methyladenosine modification.

RNA (New York, N.Y.)
2017-03 | Journal article
DOI: 10.1261/rna.059105.116
PMID: 27994090
PMC: PMC5311483
Source: Self-asserted source
Can Cenik via Europe PubMed Central

A Common Class of Transcripts with 5′-Intron Depletion, Distinct Early Coding Sequence Features, and N1-Methyladenosine Modification

2016-06-07 | Preprint
DOI: 10.1101/057455
Contributors: Can Cenik; Hon Nian Chua; Guramrit Singh; Abdalla Akef; Michael P Snyder; Alexander F. Palazzo; Melissa J Moore; Frederick P Roth
Source: check_circle
Crossref

Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations.

Nature genetics
2016-02 | Journal article
DOI: 10.1038/ng.3471
PMID: 26691984
PMC: PMC4731297
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans.

2015-08 | Journal article
PMID: 26297486
Contributors: Cenik C; Sarinay Cenik E; Byeon GW; Grubert F; Candille SI; Spacek D; Alsallakh B; Tilgner H; Araya CL; Tang H et al.
Source: Self-asserted source
Can Cenik via Europe PubMed Central

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.

2015-01 | Journal article
DOI: 10.1093/nar/gku1235
PMID: 25505164
PMC: PMC4288154
Contributors: Heyer EE; Ozadam H; Ricci EP; Cenik C; Moore MJ
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Staufen1 senses overall transcript secondary structure to regulate translation.

2014-01 | Journal article
DOI: 10.1038/nsmb.2739
PMID: 24336223
Contributors: Ricci EP; Kucukural A; Cenik C; Mercier BC; Singh G; Heyer EE; Ashar-Patel A; Peng L; Moore MJ
Source: Self-asserted source
Can Cenik via Europe PubMed Central

RanBP2/Nup358 potentiates the translation of a subset of mRNAs encoding secretory proteins.

2013 | Journal article
DOI: 10.1371/journal.pbio.1001545
PMID: 23630457
PMC: PMC3635865
Contributors: Mahadevan K; Zhang H; Akef A; Cui XA; Gueroussov S; Cenik C; Roth FP; Palazzo AF
Source: Self-asserted source
Can Cenik via Europe PubMed Central

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq.

2013-10 | Journal article
DOI: 10.1093/bioinformatics/btt428
PMID: 23929032
PMC: PMC3777114
Contributors: Kucukural A; Özadam H; Singh G; Moore MJ; Cenik C
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Introns in UTRs: why we should stop ignoring them.

2012-12 | Journal article
DOI: 10.1002/bies.201200073
PMID: 23108796
Contributors: Bicknell AA; Cenik C; Chua HN; Roth FP; Moore MJ
Source: Self-asserted source
Can Cenik via Europe PubMed Central

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.

2012-11 | Journal article
DOI: 10.1016/j.cell.2012.10.007
PMID: 23084401
PMC: PMC3522173
Contributors: Singh G; Kucukural A; Cenik C; Leszyk JD; Shaffer SA; Weng Z; Moore MJ
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Genome analysis reveals interplay between 5'UTR introns and nuclear mRNA export for secretory and mitochondrial genes.

2011-04 | Journal article
DOI: 10.1371/journal.pgen.1001366
PMID: 21533221
PMC: PMC3077370
Contributors: Cenik C; Chua HN; Zhang H; Tarnawsky SP; Akef A; Derti A; Tasan M; Moore MJ; Palazzo AF; Roth FP
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes.

2011-01 | Journal article
DOI: 10.1074/jbc.M110.190884
PMID: 21051541
PMC: PMC3020728
Contributors: Sephton CF; Cenik C; Kucukural A; Dammer EB; Cenik B; Han Y; Dewey CM; Roth FP; Herz J; Peng J et al.
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Genome-wide functional analysis of human 5' untranslated region introns.

2010 | Journal article
DOI: 10.1186/gb-2010-11-3-r29
PMID: 20222956
PMC: PMC2864569
Contributors: Cenik C; Derti A; Mellor JC; Berriz GF; Roth FP
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Pacific salmon and the coalescent effective population size.

2010 | Journal article
DOI: 10.1371/journal.pone.0013019
PMID: 20885947
PMC: PMC2946355
Contributors: Cenik C; Wakeley J
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Absence of evidence for MHC-dependent mate selection within HapMap populations.

2010-04 | Journal article
DOI: 10.1371/journal.pgen.1000925
PMID: 20442868
PMC: PMC2861700
Contributors: Derti A; Cenik C; Kraft P; Roth FP
Source: Self-asserted source
Can Cenik via Europe PubMed Central

Next generation software for functional trend analysis.

2009-11 | Journal article
DOI: 10.1093/bioinformatics/btp498
PMID: 19717575
PMC: PMC2800365
Contributors: Berriz GF; Beaver JE; Cenik C; Tasan M; Roth FP
Source: Self-asserted source
Can Cenik via Europe PubMed Central
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