Personal information

Population genomics, Molecular biology, Molecular ecology, Bioinformatics
Japan

Activities

Employment (5)

National Institute for Environmental Studies: Ibaraki, JP

2022-04 to present
Employment
Source: Self-asserted source
Yuichi Nakajima

Nagahama Institute of Bio-Science and Technology: Shiga, JP

2021-04 to 2022-03
Employment
Source: Self-asserted source
Yuichi Nakajima

Okinawa Institute of Science and Technology Graduate University: Okinawa, JP

2013-08 to 2021-03
Employment
Source: Self-asserted source
Yuichi Nakajima

The University of Tokyo: Tokyo, JP

2010-04 to 2013-07
Employment
Source: Self-asserted source
Yuichi Nakajima

University of the Ryukyus: Okinawa, JP

2009-04 to 2010-03
Employment
Source: Self-asserted source
Yuichi Nakajima

Education and qualifications (1)

University of the Ryukyus: Okinawa, JP

2006-04 to 2009-03 | Ph.D.
Education
Source: Self-asserted source
Yuichi Nakajima

Works (45)

Hydrodynamics rather than type of coastline shapes self‐recruitment in anemonefishes

Limnology and Oceanography
2024-12 | Journal article
Contributors: Masaaki Sato; Kentaro Honda; Yohei Nakamura; Lawrence Patrick C. Bernardo; Klenthon O. Bolisay; Takahiro Yamamoto; Eugene C. Herrera; Yuichi Nakajima; Chunlan Lian; Wilfredo H. Uy et al.
Source: check_circle
Crossref

Time-series dynamics in symbiont communities of acroporid corals undergoing cold stress in winter

Marine Ecology Progress Series
2024-11-21 | Journal article
Part of ISSN: 1616-1599
Contributors: Y Nakajima; S Suzuki; S Mitarai
Source: Self-asserted source
Yuichi Nakajima via Crossref Metadata Search

Population genetic structures of newly recruited and adult populations of pocilloporid corals in southwestern Shikoku, Japan

Conservation Genetics
2024-08-23 | Journal article
Part of ISSN: 1572-9737
Contributors: Satoru Sano; Yuichi Nakajima; Takuma Mezaki; Satoshi Mitarai; Masako Nakamura
Source: Self-asserted source
Yuichi Nakajima via Crossref Metadata Search

Genetic connectivity and diversity between tropical and subtropical populations of the tropical horned sea star Protoreaster nodosus in the northwest Pacific

Marine Biology
2024-07 | Journal article
Contributors: Yuichi Nakajima; Nina Yasuda; Yu Matsuki; Dan M. Arriesgado; Miguel D. Fortes; Wilfredo H. Uy; Wilfredo L. Campos; Kazuo Nadaoka; Chunlan Lian
Source: check_circle
Crossref

Clonal distribution and spatial genetic structure of the reef-building coral Galaxea fascicularis

Conservation Genetics
2024-06 | Journal article
Contributors: Yuichi Nakajima; Patricia H. Wepfer; Satoshi Mitarai
Source: check_circle
Crossref

Ocean circulation contributes to genetic connectivity of limpet populations at deep‐sea hydrothermal vents in a back‐arc basin

Evolutionary Applications
2024-06 | Journal article
Contributors: Yuichi Nakajima; Masako Nakamura; Hiromi Kayama Watanabe; Jun‐ichiro Ishibashi; Hiroyuki Yamamoto; Satoshi Mitarai
Source: check_circle
Crossref

Strong Genetic Structure and Limited Gene Flow among Populations of the Tropical Seagrass Thalassia hemprichii in the Philippines

Journal of Marine Science and Engineering
2023-02-05 | Journal article
Contributors: Yuichi Nakajima; Yu Matsuki; Miguel D. Fortes; Wilfredo H. Uy; Wilfredo L. Campos; Kazuo Nadaoka; Chunlan Lian
Source: check_circle
Crossref

Extremely Stochastic Connectivity of Island Mangroves

Frontiers in Marine Science
2022 | Journal article
EID:

2-s2.0-85133525024

Part of ISSN: 22967745
Contributors: Thomas, M.; Nakajima, Y.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

The oceanographic isolation of the Ogasawara Islands and genetic divergence in a reef-building coral

Journal of Biogeography
2022 | Journal article
EID:

2-s2.0-85138007399

Part of ISSN: 13652699 03050270
Contributors: Wepfer, P.H.; Nakajima, Y.; Fujimura, A.; Mikheyev, A.S.; Economo, E.P.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Genomic analysis of a reef‐building coral, Acropora digitifera, reveals complex population structure and a migration network in the Nansei Islands, Japan

Molecular Ecology
2022-10 | Journal article
Contributors: Kojin Tsuchiya; Yuna Zayasu; Yuichi Nakajima; Nana Arakaki; Go Suzuki; Noriyuki Satoh; Chuya Shinzato
Source: check_circle
Crossref

Genomics and effective trait candidates of edible insects

Food Bioscience
2022-08 | Journal article
Contributors: Yuichi Nakajima; Atsushi Ogura
Source: check_circle
Crossref

Management of scleractinian coral assemblages in temperate non-reefal areas: insights from a long-term monitoring study in Kushimoto, Japan (33°N)

Marine Biology
2021 | Journal article
EID:

2-s2.0-85112752844

Part of ISSN: 14321793 00253162
Contributors: Nakamura, M.; Nomura, K.; Hirabayashi, I.; Nakajima, Y.; Nakajima, T.; Mitarai, S.; Yokochi, H.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean

Molecular Phylogenetics and Evolution
2020 | Journal article
EID:

2-s2.0-85088139789

Part of ISSN: 10959513 10557903
Contributors: Wepfer, P.H.; Nakajima, Y.; Sutthacheep, M.; Radice, V.Z.; Richards, Z.; Ang, P.; Terraneo, T.; Sudek, M.; Fujimura, A.; Toonen, R.J. et al.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Metacommunity ecology of Symbiodiniaceae hosted by the coral Galaxea fascicularis

Marine Ecology Progress Series
2020 | Journal article
EID:

2-s2.0-85077933224

Part of ISSN: 01718630
Contributors: Wepfer, P.H.; Nakajima, Y.; Hui, F.K.C.; Mitarai, S.; Economo, E.P.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Critical information gaps impeding understanding of the role of larval connectivity among coral reef islands in an era of Global Change

Frontiers in Marine Science
2018 | Journal article
EID:

2-s2.0-85052901917

Part of ISSN: 22967745
Contributors: Edmunds, P.J.; McIlroy, S.E.; Adjeroud, M.; Ang, P.; Bergman, J.L.; Carpenter, R.C.; Coffroth, M.A.; Fujimura, A.G.; Hench, J.L.; Holbrook, S.J. et al.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

First evidence of asexual recruitment of Pocillopora acuta in Okinawa Island using genotypic identification

PeerJ
2018 | Journal article
EID:

2-s2.0-85056658589

Part of ISSN: 21678359
Contributors: Nakajima, Y.; Chuang, P.-S.; Ueda, N.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Isolation and characterization of novel polymorphic microsatellite loci for the deep-sea hydrothermal vent limpet, Lepetodrilus nux, and the vent-associated squat lobster, Shinkaia crosnieri

Marine Biodiversity
2018 | Journal article
EID:

2-s2.0-85018351562

Part of ISSN: 18671624 18671616
Contributors: Nakajima, Y.; Shinzato, C.; Khalturina, M.; Nakamura, M.; Watanabe, H.K.; Nakagawa, S.; Satoh, N.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Spatial variability in recruitment of benthos near drilling sites in the Iheya North hydrothermal field in the Okinawa Trough

Deep-Sea Research Part I: Oceanographic Research Papers
2018 | Journal article
EID:

2-s2.0-85044594786

Part of ISSN: 09670637
Contributors: Nakamura, M.; Nakajima, Y.; Watanabe, H.K.; Sasaki, T.; Yamamoto, H.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Elucidating the multiple genetic lineages and population genetic structure of the brooding coral Seriatopora (Scleractinia: Pocilloporidae) in the Ryukyu Archipelago

Coral Reefs
2017 | Journal article
EID:

2-s2.0-85015197396

Part of ISSN: 07224028
Contributors: Nakajima, Y.; Nishikawa, A.; Iguchi, A.; Nagata, T.; Uyeno, D.; Sakai, K.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Population genetics information for the regional conservation of a tropical seagrass, Enhalus acoroides, around the Guimaras Strait, Philippines

Conservation Genetics
2017 | Journal article
EID:

2-s2.0-85011258207

Part of ISSN: 15729737 15660621
Contributors: Nakajima, Y.; Matsuki, Y.; Arriesgado, D.M.; Campos, W.L.; Nadaoka, K.; Lian, C.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Microsatellite markers for multiple Pocillopora genetic lineages offer new insights about coral populations

Scientific Reports
2017-07-27 | Journal article
Contributors: Yuichi Nakajima; Patricia H. Wepfer; Shohei Suzuki; Yuna Zayasu; Chuya Shinzato; Noriyuki Satoh; Satoshi Mitarai
Source: check_circle
Crossref

A baseline for the genetic conservation of tropical seagrasses in the western North Pacific under the influence of the Kuroshio Current: the case of Syringodium isoetifolium

Conservation Genetics
2016 | Journal article
EID:

2-s2.0-84954364453

Part of ISSN: 15729737 15660621
Contributors: Kurokochi, H.; Matsuki, Y.; Nakajima, Y.; Fortes, M.D.; Uy, W.H.; Campos, W.L.; Nadaoka, K.; Lian, C.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Estimation of novel colony establishment and persistence of the ectomycorrhizal basidiomycete Tricholoma matsutake in a Pinus densiflora forest

Fungal Ecology
2016 | Journal article
EID:

2-s2.0-84988735666

Part of ISSN: 17545048
Contributors: Narimatsu, M.; Koiwa, T.; Sakamoto, Y.; Natsume, S.; Kurokochi, H.; Lian, C.; Nakajima, Y.; Nakade, K.; Yoshida, K.; Tawaraya, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Genetic differentiation and connectivity of morphological types of the broadcast-spawning coral Galaxea fascicularis in the Nansei Islands, Japan

Ecology and Evolution
2016 | Journal article
EID:

2-s2.0-84959545047

Part of ISSN: 20457758
Contributors: Nakajima, Y.; Zayasu, Y.; Shinzato, C.; Satoh, N.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Population genetic diversity and structure of a dominant tropical seagrass, Cymodocea rotundata, in the Western Pacific region

Marine Ecology
2016 | Journal article
EID:

2-s2.0-84970024802

Part of ISSN: 14390485 01739565
Contributors: Arriesgado, D.M.; Kurokochi, H.; Nakajima, Y.; Matsuki, Y.; Uy, W.H.; Fortes, M.D.; Campos, W.L.; Nadaoka, K.; Lian, C.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Quantifying dispersal from hydrothermal vent fields in the western Pacific Ocean

Proceedings of the National Academy of Sciences of the United States of America
2016 | Journal article
EID:

2-s2.0-84961839984

Part of ISSN: 10916490 00278424
Contributors: Mitarai, S.; Watanabe, H.; Nakajima, Y.; Shchepetkin, A.F.; McWilliams, J.C.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

The mitochondrial genome sequence of a deep-sea, hydrothermal vent limpet, Lepetodrilus nux, presents a novel vetigastropod gene arrangement

Marine Genomics
2016 | Journal article
EID:

2-s2.0-84963625816

Part of ISSN: 18747787
Contributors: Nakajima, Y.; Shinzato, C.; Khalturina, M.; Nakamura, M.; Watanabe, H.; Satoh, N.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Unexpectedly complex gradation of coral population structure in the Nansei Islands, Japan

Ecology and Evolution
2016 | Journal article
EID:

2-s2.0-84978923791

Part of ISSN: 20457758
Contributors: Zayasu, Y.; Nakajima, Y.; Sakai, K.; Suzuki, G.; Satoh, N.; Shinzato, C.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Genetic diversity and structure of the tropical seagrass Cymodocea serrulata spanning its central diversity hotspot and range edge

Aquatic Ecology
2015 | Journal article
EID:

2-s2.0-84938212629

Part of ISSN: 13862588
Contributors: Arriesgado, D.M.; Kurokochi, H.; Nakajima, Y.; Matsuki, Y.; Uy, W.H.; Fortes, M.D.; Campos, W.L.; Nadaoka, K.; Lian, C.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Isolation and characterization of novel microsatellite markers for Cymodocea serrulata (Cymodoceaceae), a seagrass distributed widely in the Indo-Pacific region

Plant Species Biology
2015 | Journal article
EID:

2-s2.0-84942597122

Part of ISSN: 14421984 0913557X
Contributors: Arriesgado, D.M.; Kurokochi, H.; Lian, C.; Nakajima, Y.; Matsuki, Y.; Nagai, S.; Yasuike, M.; Nakamura, Y.; Uy, W.H.; Fortes, M.D. et al.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Novel polymorphic microsatellite markers reveal genetic differentiation between two sympatric types of Galaxea fascicularis

PLoS ONE
2015 | Journal article
EID:

2-s2.0-84940063610

Part of ISSN: 19326203
Contributors: Nakajima, Y.; Shinzato, C.; Satoh, N.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Cross-species, amplifiable microsatellite markers for neoverrucid barnacles from deep-sea hydrothermal vents developed using next-generation sequencing

International Journal of Molecular Sciences
2014 | Journal article
EID:

2-s2.0-84930751703

Part of ISSN: 14220067 16616596
Contributors: Nakajima, Y.; Shinzato, C.; Khalturina, M.; Watanabe, H.; Inagaki, F.; Satoh, N.; Mitarai, S.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Development of novel microsatellite markers for Cymodocea rotundata Ehrenberg (Cymodoceaceae), a pioneer seagrass species widely distributed in the Indo-Pacific

Conservation Genetics Resources
2014 | Journal article
EID:

2-s2.0-84926312970

Part of ISSN: 18777260 18777252
Contributors: Arriesgado, D.M.; Nakajima, Y.; Matsuki, Y.; Lian, C.; Nagai, S.; Yasuike, M.; Nakamura, Y.; Fortes, M.D.; Uy, W.H.; Campos, W.L. et al.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Development of novel, cross-species microsatellite markers for Acropora corals using next-generation sequencing technology

Frontiers in Marine Science
2014 | Journal article
EID:

2-s2.0-85008929939

Part of ISSN: 22967745
Contributors: Shinzato, C.; Yasuoka, Y.; Mungpakdee, S.; Arakaki, N.; Fujie, M.; Nakajima, Y.; Satoh, N.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

The Kuroshio Current influences genetic diversity and population genetic structure of a tropical seagrass, Enhalus acoroides

Molecular Ecology
2014 | Journal article
EID:

2-s2.0-84919725023

Part of ISSN: 1365294X 09621083
Contributors: Nakajima, Y.; Matsuki, Y.; Lian, C.; Fortes, M.D.; Uy, W.H.; Campos, W.L.; Nakaoka, M.; Nadaoka, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Development of 10 novel polymorphic microsatellite markers for the Indo-Pacific horned starfish, Protoreaster nodosus

Marine Genomics
2013 | Journal article
EID:

2-s2.0-84885856980

Part of ISSN: 18747787
Contributors: Nakajima, Y.; Yasuda, N.; Matsuki, Y.; Arriesgado, D.M.; Lian, C.; Fortes, M.D.; Uy, W.H.; Campos, W.L.; Nakaoka, M.; Taquet, C. et al.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Development of microsatellite markers in a tropical seagrass Syringodium isoetifolium (Cymodoceaceae)

Conservation Genetics Resources
2013 | Journal article
EID:

2-s2.0-84880992490

Part of ISSN: 18777252 18777260
Contributors: Matsuki, Y.; Takahashi, A.; Nakajima, Y.; Lian, C.; Fortes, M.D.; Uy, W.H.; Campos, W.L.; Nakaoka, M.; Nadaoka, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Development of microsatellite markers for Thalassia hemprichii (Hydrocharitaceae), a widely distributed seagrass in the Indo-Pacific

Conservation Genetics Resources
2012 | Journal article
EID:

2-s2.0-84867597877

Part of ISSN: 18777252 18777260
Contributors: Matsuki, Y.; Nakajima, Y.; Lian, C.; Fortes, M.D.; Uy, W.H.; Campos, W.L.; Nakaoka, M.; Nadaoka, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Development of novel microsatellite markers in a tropical seagrass, Enhalus acoroides

Conservation Genetics Resources
2012 | Journal article
EID:

2-s2.0-84892898433

Part of ISSN: 18777260 18777252
Contributors: Nakajima, Y.; Matsuki, Y.; Lian, C.; Fortes, M.D.; Uy, W.H.; Campos, W.L.; Nakaoka, M.; Nadaoka, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Regional genetic differentiation among northern high-latitude island populations of a broadcast-spawning coral

Coral Reefs
2012 | Journal article
EID:

2-s2.0-84869173901

Part of ISSN: 07224028
Contributors: Nakajima, Y.; Nishikawa, A.; Iguchi, A.; Sakai, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

The population genetic approach delineates the species boundary of reproductively isolated corymbose acroporid corals

Molecular Phylogenetics and Evolution
2012 | Journal article
EID:

2-s2.0-84858078196

Part of ISSN: 10557903 10959513
Contributors: Nakajima, Y.; Nishikawa, A.; Iguchi, A.; Sakai, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Gene flow and genetic diversity of a broadcast-spawning coral in northern peripheral populations

PLoS ONE
2010 | Journal article
EID:

2-s2.0-77955302343

Part of ISSN: 19326203
Contributors: Nakajima, Y.; Nishikawa, A.; Iguchi, A.; Sakai, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Genetic connectivity in the broadcast-spawning coral acropora digitifera analyzed by microsatellite markers on the sekisei reef, southwestern Japan

Zoological Science
2009 | Journal article
EID:

2-s2.0-65949116594

Part of ISSN: 02890003 02890003
Contributors: Nakajima, Y.; Nishikawa, A.; Isomura, N.; Iguchi, A.; Sakai, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

In vitro fertilization efficiency in coral Acropora digitifera

Zygote
2009 | Journal article
EID:

2-s2.0-68349142908

Part of ISSN: 09671994 14698730
Contributors: Iguchi, A.; Morita, M.; Nakajima, Y.; Nishikawa, A.; Miller, D.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier

Novel and cross-species amplifiable microsatellite markers in two Acropora species

Plankton and Benthos Research
2009 | Journal article
EID:

2-s2.0-65949098990

Part of ISSN: 18808247
Contributors: Nakajima, Y.; Nishikawa, A.; Iguchi, A.; Sakai, K.
Source: Self-asserted source
Yuichi Nakajima via Scopus - Elsevier