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Northeastern University: Boston, MA, US

PhD Student (Khoury College of Computer Science)
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Devon Kohler

Works (6)

Relative quantification of proteins and post-translational modifications in proteomic experiments with shared peptides: a weight-based approach

Bioinformatics
2025-03-04 | Journal article
DOI: 10.1093/bioinformatics/btaf046
Contributors: Mateusz Staniak; Ting Huang; Amanda M Figueroa-Navedo; Devon Kohler; Meena Choi; Trent Hinkle; Tracy Kleinheinz; Robert Blake; Christopher M Rose; Yingrong Xu et al.
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An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing

Nature Protocols
2024-10 | Journal article
DOI: 10.1038/s41596-024-01000-3
Contributors: Devon Kohler; Mateusz Staniak; Fengchao Yu; Alexey I. Nesvizhskii; Olga Vitek
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Crossref

MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale

Journal of Proteome Research
2023-05-05 | Journal article
DOI: 10.1021/acs.jproteome.2c00834
Contributors: Devon Kohler; Mateusz Staniak; Tsung-Heng Tsai; Ting Huang; Nicholas Shulman; Oliver M. Bernhardt; Brendan X. MacLean; Alexey I. Nesvizhskii; Lukas Reiter; Eduard Sabido et al.
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Crossref

MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments

Journal of Proteome Research
2023-02-03 | Journal article
DOI: 10.1021/acs.jproteome.2c00603
Contributors: Devon Kohler; Maanasa Kaza; Cristina Pasi; Ting Huang; Mateusz Staniak; Dhaval Mohandas; Eduard Sabido; Meena Choi; Olga Vitek
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Crossref

MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics

Molecular & Cellular Proteomics
2023-01 | Journal article
DOI: 10.1016/j.mcpro.2022.100477
Contributors: Devon Kohler; Tsung-Heng Tsai; Erik Verschueren; Ting Huang; Trent Hinkle; Lilian Phu; Meena Choi; Olga Vitek
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Crossref

MSstatsPTM: Statistical relative quantification of post-translational modifications in bottom-up mass spectrometry-based proteomics

2022-09-26 | Preprint
DOI: 10.1101/2022.09.24.509068
Contributors: Devon Kohler; Tsung-Heng Tsai; Erik Verschueren; Ting Huang; Trent Hinkle; Lilian Phu; Meena Choi; Olga Vitek
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Crossref
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