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Scopus Author ID: 35080226600

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Employment (3)

Lawrence Berkeley National Laboratory: Berkeley, CA, US

2021-07-01 to present | Senior Scientific Engineer Associate (Environmental Genomics & Systems Biology (EGSB))
Employment
Source: Self-asserted source
Markus de Raad

Lawrence Berkeley National Laboratory: CA, CA, US

2014-09-01 to 2018-07-01 | Postdoctoral fellow (Environmental Genomics & Systems Biology (EGSB))
Employment
Source: Self-asserted source
Markus de Raad

University of California Berkeley: Berkeley, CA, US

2014-01-01 to 2014-08-31 | Postdoctoral fellow (Bioengineering)
Employment
Source: Self-asserted source
Markus de Raad

Education and qualifications (3)

Universiteit Utrecht: Utrecht, Utrecht, NL

2009-10-01 to 2013-12-31 | PhD (Pharmaceutical Sciences)
Education
Source: Self-asserted source
Markus de Raad

Universiteit Utrecht: Utrecht, Utrecht, NL

2006-09-01 to 2009-03-01 | Master of Science (MSc) (Utrech Institute of Pharmaceutical Sciences (UIPS) - Drug Innovation)
Education
Source: Self-asserted source
Markus de Raad

Hogeschool Utrecht: Utrecht, Utrecht, NL

2002-09-01 to 2006-06-31 | Bachelor of Applied Science (B.A.Sc.) (Chemistry)
Education
Source: Self-asserted source
Markus de Raad

Works (34)

A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening

Lab on a Chip
2023 | Journal article
DOI: 10.1039/d2lc00980c
EID:

2-s2.0-85165255460

Part of ISSN: 14730189 14730197
Contributors: Ha, N.S.; Onley, J.R.; Deng, K.; Andeer, P.; Bowen, B.P.; Gupta, K.; Kim, P.W.; Kuch, N.; Kutschke, M.; Parker, A. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format

PLoS ONE
2023 | Journal article
DOI: 10.1371/journal.pone.0288102
EID:

2-s2.0-85164255858

Part of ISSN: 19326203
Contributors: Chen, Y.; Gin, J.W.; Wang, Y.; de Raad, M.; Tan, S.; Hillson, N.J.; Northen, T.R.; Adams, P.D.; Petzold, C.J.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier
grade
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Mass spectrometry imaging–based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme

Journal of Biological Chemistry
2023 | Journal article
DOI: 10.1016/j.jbc.2023.102939
EID:

2-s2.0-85148851100

Part of ISSN: 1083351X 00219258
Contributors: de Raad, M.; Koper, K.; Deng, K.; Bowen, B.P.; Maeda, H.A.; Northen, T.R.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier
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Rapid quantification of alcohol production in microorganisms based on nanostructure-initiator mass spectrometry (NIMS)

Analytical Biochemistry
2023 | Journal article
DOI: 10.1016/j.ab.2022.114997
EID:

2-s2.0-85144591418

Part of ISSN: 10960309 00032697
Contributors: Deng, K.; Wang, X.; Ing, N.; Opgenorth, P.; de Raad, M.; Kim, J.; Simmons, B.A.; Adams, P.D.; Singh, A.K.; Lee, T.S. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Metabolic traits and the niche of bulk soil bacteria in a Mediterranean grassland

bioRxiv
2022 | Other
DOI: 10.1101/2022.06.21.497019
EID:

2-s2.0-85135804141

Part of ISSN: 26928205
Contributors: Zhalnina, K.; White, R.A.; de Raad, M.; Deng, K.; Nicora, C.D.; Karaoz, U.; Pett-Ridge, J.; Firestone, M.K.; Lipton, M.S.; Northen, T.R. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

NLDM: A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria

protocols.io
2022-08-12 | Journal article | Author
DOI: dx.doi.org/10.17504/protocols.io.14egn7o2yv5d/v1
Contributors: Markus de Raad; Adam Arkin
Source: check_circle
protocols.io
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A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria

Frontiers in Microbiology
2022-05-25 | Journal article
DOI: 10.3389/fmicb.2022.855331
Part of ISSN: 1664-302X
Contributors: Markus de Raad; Yifan V. Li; Jennifer V. Kuehl; Peter F. Andeer; Suzanne M. Kosina; Andrew Hendrickson; Nicholas R. Saichek; Amber N. Golini; La Zhen Han; Ying Wang et al.
Source: Self-asserted source
Markus de Raad
grade
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Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms

Frontiers in Microbiology
2021 | Journal article
DOI: 10.3389/fmicb.2021.757856
EID:

2-s2.0-85121752547

Part of ISSN: 1664302X
Contributors: Kosina, S.M.; Rademacher, P.; Wetmore, K.M.; de Raad, M.; Zemla, M.; Zane, G.M.; Zulovich, J.J.; Chakraborty, R.; Bowen, B.P.; Wall, J.D. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Faster, better, and cheaper: Harnessing microfluidics and mass spectrometry for biotechnology

RSC Chemical Biology
2021 | Journal article
DOI: 10.1039/d1cb00112d
EID:

2-s2.0-85116899427

Part of ISSN: 26330679
Contributors: Ha, N.S.; De Raad, M.; Han, L.Z.; Golini, A.; Petzold, C.J.; Northen, T.R.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier
grade
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Biofilm Interaction Mapping and Analysis (BIMA): A tool for deconstructing interspecific interactions in co-culture biofilms

2021-08-03 | Other
DOI: 10.1101/2021.08.03.454817
Contributors: Suzanne M. Kosina; Peter Rademacher; Kelly M. Wetmore; Markus de Raad; Marcin Zemla; Grant M. Zane; Jennifer J. Zulovich; Romy Chakraborty; Benjamin P. Bowen; Judy D. Wall et al.
Source: check_circle
Crossref

Cervicovaginal microbiome composition is associated with metabolic profiles in healthy pregnancy

mBio
2020 | Journal article
DOI: 10.1128/mBio.01851-20
EID:

2-s2.0-85089928436

Part of ISSN: 21507511 21612129
Contributors: Oliver, A.; Lamere, B.; Weihe, C.; Wandro, S.; Lindsay, K.L.; Wadhwa, P.D.; Mills, D.A.; Pride, D.T.; Fiehn, O.; Northen, T. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere

ISME Journal
2020 | Journal article
DOI: 10.1038/s41396-019-0557-y
EID:

2-s2.0-85079535441

Part of ISSN: 17517370 17517362
Contributors: Doud, D.F.R.; Bowers, R.M.; Schulz, F.; De Raad, M.; Deng, K.; Tarver, A.; Glasgow, E.; Vander Meulen, K.; Fox, B.; Deutsch, S. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon

Plant Direct
2020 | Journal article
DOI: 10.1002/pld3.207
EID:

2-s2.0-85088824437

Part of ISSN: 24754455
Contributors: Sasse, J.; Kosina, S.M.; de Raad, M.; Jordan, J.S.; Whiting, K.; Zhalnina, K.; Northen, T.R.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

A High-Throughput Mass Spectrometric Enzyme Activity Assay Enabling the Discovery of Cytochrome P450 Biocatalysts

Angewandte Chemie - International Edition
2019 | Journal article
DOI: 10.1002/anie.201901782
EID:

2-s2.0-85067486786

Part of ISSN: 15213773 14337851
Contributors: de Rond, T.; Gao, J.; Zargar, A.; de Raad, M.; Cunha, J.; Northen, T.R.; Keasling, J.D.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier
grade
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CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria

Nature Microbiology
2019 | Journal article
DOI: 10.1038/s41564-019-0573-8
EID:

2-s2.0-85074966397

Part of ISSN: 20585276
Contributors: Wang, G.; Zhao, Z.; Ke, J.; Engel, Y.; Shi, Y.-M.; Robinson, D.; Bingol, K.; Zhang, Z.; Bowen, B.; Louie, K. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Enzyme promiscuity shapes adaptation to novel growth substrates

Molecular Systems Biology
2019 | Journal article
DOI: 10.15252/msb.20188462
EID:

2-s2.0-85064552294

Part of ISSN: 17444292
Contributors: Guzmán, G.I.; Sandberg, T.E.; LaCroix, R.A.; Nyerges, Á.; Papp, H.; de Raad, M.; King, Z.A.; Hefner, Y.; Northen, T.R.; Notebaart, R.A. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning

ACS Synthetic Biology
2019 | Journal article
DOI: 10.1021/acssynbio.9b00020
EID:

2-s2.0-85067667919

Part of ISSN: 21615063
Contributors: Opgenorth, P.; Costello, Z.; Okada, T.; Goyal, G.; Chen, Y.; Gin, J.; Benites, V.; De Raad, M.; Northen, T.R.; Deng, K. et al.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier
grade
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Massive screening of metabolites using picoliter droplet array with nanostructure-initiator mass spectrometry

23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019
2019 | Conference paper
EID:

2-s2.0-85094954948

Part of ISBN: 9781733419000
Contributors: Ha, N.S.; de Raad, M.; Song, F.; Deng, K.; Ing, N.; Singh, A.K.; Northen, T.R.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

MAGI: A Method for Metabolite Annotation and Gene Integration

ACS Chemical Biology
2019-04-19 | Journal article
DOI: 10.1021/acschembio.8b01107
Contributors: Onur Erbilgin; Oliver Rübel; Katherine B. Louie; Matthew Trinh; Markus de Raad; Tony Wildish; Daniel Udwary; Cindi Hoover; Samuel Deutsch; Trent R. Northen et al.
Source: check_circle
Crossref

Analysis and Interpretation of Mass Spectrometry Imaging Datasets

Comprehensive Analytical Chemistry
2018 | Book chapter
DOI: 10.1016/bs.coac.2018.06.006
EID:

2-s2.0-85050667592

ISBN: 9780444640444
Part of ISSN: 0166526X
Contributors: de Raad, M.; Northen, T.R.; Bowen, B.P.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Insulator Nanostructure Desorption Ionization Mass Spectrometry

Analytical Chemistry
2018-08-21 | Journal article
DOI: 10.1021/acs.analchem.8b01989
Contributors: Todd A. Duncombe; Markus De Raad; Benjamin P. Bowen; Anup K. Singh; Trent R. Northen
Source: check_circle
Crossref

Observing biosynthetic activity Utilizing next generation sequencing and the DNA Linked Enzyme Coupled Assay

ACS Chemical Biology
2017 | Journal article
DOI: 10.1021/acschembio.6b00652
EID:

2-s2.0-85021859815

Part of ISSN: 15548937 15548929
Contributors: De Raad, M.; Modavi, C.; Sukovich, D.J.; Anderson, J.C.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier
grade
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OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging

Analytical Chemistry
2017 | Journal article
DOI: 10.1021/acs.analchem.6b05004
EID:

2-s2.0-85020843083

Part of ISSN: 15206882 00032700
Contributors: De Raad, M.; De Rond, T.; Rübel, O.; Keasling, J.D.; Northen, T.R.; Bowen, B.P.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier
grade
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Morphology-Driven Control of Metabolite Selectivity Using Nanostructure-Initiator Mass Spectrometry

Analytical Chemistry
2017-06-20 | Journal article
DOI: 10.1021/acs.analchem.7b00599
Contributors: Jian Gao; Katherine B. Louie; Philipp Steinke; Benjamin P. Bowen; Markus de Raad; Ronald N. Zuckermann; Gary Siuzdak; Trent R. Northen
Source: check_circle
Crossref

Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry

Analytical Chemistry
2016 | Journal article
DOI: 10.1021/acs.analchem.5b03452
EID:

2-s2.0-84957593018
Contributors: Gao, J.; De Raad, M.; Bowen, B.P.; Zuckermann, R.N.; Northen, T.R.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

High-throughput platforms for metabolomics

Current Opinion in Chemical Biology
2016 | Journal article
DOI: 10.1016/j.cbpa.2015.10.012
EID:

2-s2.0-84947763523
Contributors: de Raad, M.; Fischer, C.R.; Northen, T.R.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

DNA-Linked Enzyme-Coupled Assay for Probing Glucosyltransferase Specificity

ACS Synthetic Biology
2015 | Journal article
DOI: 10.1021/sb500341a
EID:

2-s2.0-84937145746
Contributors: Sukovich, D.J.; Modavi, C.; De Raad, M.; Prince, R.N.; Anderson, J.C.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Peptide vectors for gene delivery: From single peptides to multifunctional peptide nanocarriers

Nanomedicine
2014 | Journal article
DOI: 10.2217/NNM.14.90
EID:

2-s2.0-84911475819
Contributors: De Raad, M.; Teunissen, E.A.; Mastrobattista, E.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

A solid-phase platform for combinatorial and scarless multipart gene assembly

ACS Synthetic Biology
2013 | Journal article
DOI: 10.1021/sb300122q
EID:

2-s2.0-84879762429
Contributors: De Raad, M.; Kooijmans, S.A.A.; Teunissen, E.A.; Mastrobattista, E.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Production and biomedical applications of virus-like particles derived from polyomaviruses

Journal of Controlled Release
2013 | Journal article
DOI: 10.1016/j.jconrel.2013.08.026
EID:

2-s2.0-84884300078
Contributors: Teunissen, E.A.; De Raad, M.; Mastrobattista, E.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

High-content screening of peptide-based non-viral gene delivery systems

Journal of Controlled Release
2012 | Journal article
DOI: 10.1016/j.jconrel.2011.09.078
EID:

2-s2.0-84859268395
Contributors: De Raad, M.; Teunissen, E.A.; Lelieveld, D.; Egan, D.A.; Mastrobattista, E.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Antigen-expressing immunostimulatory liposomes as a genetically programmable synthetic vaccine

Systems and Synthetic Biology
2011 | Journal article
DOI: 10.1007/s11693-010-9066-z
EID:

2-s2.0-80052029345
Contributors: Amidi, M.; de Raad, M.; Crommelin, D.J.A.; Hennink, W.E.; Mastrobattista, E.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Optimization and quantification of protein synthesis inside liposomes

Journal of Liposome Research
2010 | Journal article
DOI: 10.3109/08982100903402954
EID:

2-s2.0-77149150337
Contributors: Amidi, M.; De Raad, M.; De Graauw, H.; Van Ditmarsch, D.; Hennink, W.E.; Crommelin, D.J.A.; Mastrobattista, E.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Biodegradable poly(2-dimethylamino ethylamino)phosphazene for in vivo gene delivery to tumor cells. Effect of polymer molecular weight

Pharmaceutical Research
2007 | Journal article
DOI: 10.1007/s11095-007-9299-z
EID:

2-s2.0-34250844392
Contributors: De Wolf, H.K.; De Raad, M.; Snel, C.; Van Steenbergen, M.J.; Fens, M.H.A.M.; Storm, G.; Hennink, W.E.
Source: Self-asserted source
Markus de Raad via Scopus - Elsevier

Peer review (4 reviews for 3 publications/grants)

Review activity for ACS synthetic biology. (1)
Review activity for Analytical chemistry. (2)
Review activity for Nature chemical biology. (1)
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