Zachary Charlop-Powers (0000-0001-8816-4680)

Activities

antiSMASH 6.0: improving cluster detection and comparison capabilities

Nucleic Acids Research

2021-07-02 | Journal article

DOI: 10.1093/nar/gkab335

Contributors: Kai Blin; Simon Shaw; Alexander M Kloosterman; Zach Charlop-Powers; Gilles P van Wezel; Marnix H Medema; Tilmann Weber

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OUP accepted manuscript

ICES Journal of Marine Science

2020 | Journal article

DOI: 10.1093/icesjms/fsaa225

Part of ISSN: 1054-3139

Part of ISSN: 1095-9289

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Zachary Charlop-Powers

Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States

Frontiers in Marine Science

2020-05-05 | Journal article

DOI: 10.3389/fmars.2020.00226

Part of ISSN: 2296-7745

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Zachary Charlop-Powers

GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates.

PloS one

2018-12-11 | Journal article

DOI: 10.1371/journal.pone.0198717

PMID: 30533051

PMC: PMC6289459

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Zachary Charlop-Powers

Culture-independent discovery of the malacidins as calcium-dependent antibiotics with activity against multidrug-resistant Gram-positive pathogens

Nature Microbiology

2018-02-12 | Journal article

DOI: 10.1038/s41564-018-0110-1

Contributors: Bradley M. Hover; Seong-Hwan Kim; Micah Katz; Zachary Charlop-Powers; Jeremy G. Owen; Melinda A. Ternei; Jeffrey Maniko; Andreia B. Estrela; Henrik Molina; Steven Park et al.

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Bacterial natural product biosynthetic domain composition in soil correlates with changes in latitude on a continent-wide scale

Proceedings of the National Academy of Sciences

2017-10-31 | Journal article

DOI: 10.1073/pnas.1710262114

Contributors: Christophe Lemetre; Jeffrey Maniko; Zachary Charlop-Powers; Ben Sparrow; Andrew J. Lowe; Sean F. Brady

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Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary.

PloS one

2017-04-12 | Journal article

DOI: 10.1371/journal.pone.0175186

PMID: 28403183

PMC: PMC5389620

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Zachary Charlop-Powers

Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity

Proceedings of the National Academy of Sciences

2016-12-20 | Journal article

DOI: 10.1073/pnas.1615581113

Contributors: Zachary Charlop-Powers; Clara C. Pregitzer; Christophe Lemetre; Melinda A. Ternei; Jeffrey Maniko; Bradley M. Hover; Paula Y. Calle; Krista L. McGuire; Jeanne Garbarino; Helen M. Forgione et al.

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Discovery of MRSA active antibiotics using primary sequence from the human microbiome

Nature Chemical Biology

2016-12-17 | Journal article

DOI: 10.1038/nchembio.2207

Contributors: John Chu; Xavier Vila-Farres; Daigo Inoyama; Melinda Ternei; Louis J Cohen; Emma A Gordon; Boojala Vijay B Reddy; Zachary Charlop-Powers; Henry A Zebroski; Ricardo Gallardo-Macias et al.

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Multiplexed CRISPR/Cas9 and TAR-mediated promoter engineering of natural product biosynthetic gene clusters in yeast

ACS Synth. Biol.

2016-05 | Journal article

DOI: 10.1021/acssynbio.6b00080

Contributors: Hahk-Soo Kang; Zachary Charlop-Powers; Sean F. Brady

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Zachary Charlop-Powers via Crossref Metadata Search

Yeast homologous recombination-based promoter engineering for the activation of silent natural product biosynthetic gene clusters

Proc Natl Acad Sci USA

2015-07-06 | Journal article

DOI: 10.1073/pnas.1507606112

Contributors: Daniel Montiel; Hahk-Soo Kang; Fang-Yuan Chang; Zachary Charlop-Powers; Sean F. Brady

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phylogeo: an R package for geographic analysis and visualization of microbiome data

Bioinformatics

2015-04 | Journal article

DOI:

10.1093/bioinformatics/btv269

Contributors: Z. Charlop-Powers; S. F. Brady

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Global biogeographic sampling of bacterial secondary metabolism.

2015-01 | Journal article

PMID:

25599565

Contributors: Charlop-Powers Z; Owen JG; Reddy BV; Ternei MA; Guimarães DO; de Frias UA; Pupo MT; Seepe P; Feng Z; Brady SF

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Zachary Charlop-Powers via Europe PubMed Central

Global biogeographic sampling of bacterial secondary metabolism

eLife

2015-01-19 | Journal article

DOI: 10.7554/eLife.05048

Contributors: Zachary Charlop-Powers; Jeremy G Owen; Boojala Vijay B Reddy; Melinda A Ternei; Denise O Guimarães; Ulysses A de Frias; Monica T Pupo; Prudy Seepe; Zhiyang Feng; Sean F Brady

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Chemical-biogeographic survey of secondary metabolism in soil

2014 | Journal article

DOI:

10.1073/pnas.1318021111

Part of ISSN:

0027-8424

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Zachary Charlop-Powers via Crossref Metadata Search

eSNaPD: A Versatile, Web-Based Bioinformatics Platform for Surveying and Mining Natural Product Biosynthetic Diversity from Metagenomes

Chemistry & Biology

2014-07 | Journal article

DOI:

10.1016/j.chembiol.2014.06.007

Part of ISSN:

1074-5521

Contributors: Boojala Vijay B. Reddy; Aleksandr Milshteyn; Zachary Charlop-Powers; Sean F. Brady

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Metagenomic small molecule discovery methods

Current Opinion in Microbiology

2014-06 | Journal article

DOI:

10.1016/j.mib.2014.05.021

Part of ISSN:

1369-5274

Contributors: Zachary Charlop-Powers; Aleksandr Milshteyn; Sean F Brady

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Selective Enrichment of Environmental DNA Libraries for Genes Encoding Nonribosomal Peptides and Polyketides by Phosphopantetheine Transferase-Dependent Complementation of Siderophore Biosynthesis

2013 | Journal article

DOI:

10.1021/cb3004918

Part of ISSN:

1554-8929

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Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products.

2013-07 | Journal article

DOI:

10.1073/pnas.1222159110

PMID:

23824289

Contributors: Owen JG; Reddy BV; Ternei MA; Charlop-Powers Z; Calle PY; Kim JH; Brady SF

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Zachary Charlop-Powers via Europe PubMed Central

Natural product biosynthetic gene diversity in geographically distinct soil microbiomes.

2012-05 | Journal article

DOI:

10.1128/AEM.00102-12

PMID:

22427492

PMC:

PMC3346347

Contributors: Reddy BV; Kallifidas D; Kim JH; Charlop-Powers Z; Feng Z; Brady SF

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Zachary Charlop-Powers via Europe PubMed Central

Paramecium bursaria chlorella virus 1 encodes a polyamine acetyltransferase.

2012-03 | Journal article

DOI:

10.1074/jbc.C111.337816

PMID:

22277659

PMC:

PMC3308761

Contributors: Charlop-Powers Z; Jakoncic J; Gurnon JR; Van Etten JL; Zhou MM

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Zachary Charlop-Powers via Europe PubMed Central

Structural insights into selective histone H3 recognition by the human Polybromo bromodomain 2

2010 | Journal article

DOI:

10.1038/cr.2010.43

Part of ISSN:

1001-0602

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Lack of association of HLA class II alleles with peanut allergy

2006 | Journal article

DOI:

10.1016/s1081-1206(10)61351-8

Part of ISSN:

1081-1206

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The Major Allergen from Peanut, Ara h 1, is a Ligand of DC-SIGN

2006 | Journal article

DOI:

10.1016/j.jaci.2005.12.350

Part of ISSN:

0091-6749

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Transcytosis of IgE–Antigen Complexes by CD23a in Human Intestinal Epithelial Cells and Its Role in Food Allergy

2006 | Journal article

DOI:

10.1053/j.gastro.2006.03.044

Part of ISSN:

0016-5085

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The major glycoprotein allergen from Arachis hypogaea, Ara h 1, is a ligand of dendritic cell-specific ICAM-grabbing nonintegrin and acts as a Th2 adjuvant in vitro.

2006-09 | Journal article

PMID:

16951327

Contributors: Shreffler WG; Castro RR; Kucuk ZY; Charlop-Powers Z; Grishina G; Yoo S; Burks AW; Sampson HA

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Zachary Charlop-Powers via Europe PubMed Central

Review activity for ACS chemical biology. (3)

Review activity for Journal of cheminformatics. (1)

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https://orcid.org/0000-0001-8816-4680

Activities

Works (26)

antiSMASH 6.0: improving cluster detection and comparison capabilities

OUP accepted manuscript

Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States

GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates.

Culture-independent discovery of the malacidins as calcium-dependent antibiotics with activity against multidrug-resistant Gram-positive pathogens

Bacterial natural product biosynthetic domain composition in soil correlates with changes in latitude on a continent-wide scale

Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary.

Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity

Discovery of MRSA active antibiotics using primary sequence from the human microbiome

Multiplexed CRISPR/Cas9 and TAR-mediated promoter engineering of natural product biosynthetic gene clusters in yeast

Yeast homologous recombination-based promoter engineering for the activation of silent natural product biosynthetic gene clusters

phylogeo: an R package for geographic analysis and visualization of microbiome data

Global biogeographic sampling of bacterial secondary metabolism.

Global biogeographic sampling of bacterial secondary metabolism

Chemical-biogeographic survey of secondary metabolism in soil

eSNaPD: A Versatile, Web-Based Bioinformatics Platform for Surveying and Mining Natural Product Biosynthetic Diversity from Metagenomes

Metagenomic small molecule discovery methods

Selective Enrichment of Environmental DNA Libraries for Genes Encoding Nonribosomal Peptides and Polyketides by Phosphopantetheine Transferase-Dependent Complementation of Siderophore Biosynthesis

Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products.

Natural product biosynthetic gene diversity in geographically distinct soil microbiomes.

Paramecium bursaria chlorella virus 1 encodes a polyamine acetyltransferase.

Structural insights into selective histone H3 recognition by the human Polybromo bromodomain 2

Lack of association of HLA class II alleles with peanut allergy

The Major Allergen from Peanut, Ara h 1, is a Ligand of DC-SIGN

Transcytosis of IgE–Antigen Complexes by CD23a in Human Intestinal Epithelial Cells and Its Role in Food Allergy

The major glycoprotein allergen from Arachis hypogaea, Ara h 1, is a ligand of dendritic cell-specific ICAM-grabbing nonintegrin and acts as a Th2 adjuvant in vitro.

Peer review (4 reviews for 2 publications/grants)

https://orcid.org/0000-0001-8816-4680

Personal information

Activities

Works (26)

antiSMASH 6.0: improving cluster detection and comparison capabilities

OUP accepted manuscript

Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States

GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates.

Culture-independent discovery of the malacidins as calcium-dependent antibiotics with activity against multidrug-resistant Gram-positive pathogens

Bacterial natural product biosynthetic domain composition in soil correlates with changes in latitude on a continent-wide scale

Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary.

Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity

Discovery of MRSA active antibiotics using primary sequence from the human microbiome

Multiplexed CRISPR/Cas9 and TAR-mediated promoter engineering of natural product biosynthetic gene clusters in yeast

Yeast homologous recombination-based promoter engineering for the activation of silent natural product biosynthetic gene clusters

phylogeo: an R package for geographic analysis and visualization of microbiome data

Global biogeographic sampling of bacterial secondary metabolism.

Global biogeographic sampling of bacterial secondary metabolism

Chemical-biogeographic survey of secondary metabolism in soil

eSNaPD: A Versatile, Web-Based Bioinformatics Platform for Surveying and Mining Natural Product Biosynthetic Diversity from Metagenomes

Metagenomic small molecule discovery methods

Selective Enrichment of Environmental DNA Libraries for Genes Encoding Nonribosomal Peptides and Polyketides by Phosphopantetheine Transferase-Dependent Complementation of Siderophore Biosynthesis

Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products.

Natural product biosynthetic gene diversity in geographically distinct soil microbiomes.

Paramecium bursaria chlorella virus 1 encodes a polyamine acetyltransferase.

Structural insights into selective histone H3 recognition by the human Polybromo bromodomain 2

Lack of association of HLA class II alleles with peanut allergy

The Major Allergen from Peanut, Ara h 1, is a Ligand of DC-SIGN

Transcytosis of IgE–Antigen Complexes by CD23a in Human Intestinal Epithelial Cells and Its Role in Food Allergy

The major glycoprotein allergen from Arachis hypogaea, Ara h 1, is a ligand of dendritic cell-specific ICAM-grabbing nonintegrin and acts as a Th2 adjuvant in vitro.

Peer review (4 reviews for 2 publications/grants)