Personal information

Websites & social links

http://msrahman.buet.ac.bd/

Other IDs

Scopus Author ID: 55457931100

Keywords

Algorithms, Stringology, Bioinformatics, Metaheuristics

Countries

Bangladesh

Activities

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Employment (2)

King's College London: London, London, GB

2014-11-01 to present | Visiting Senior Research Fellow (Informatics)
Employment
Source: Self-asserted source
M. Sohel Rahman

Bangladesh University of Engineering and Technology: Dhaka, Dhaka District, BD

2012-07-04 to present | PROFESSOR (CSE)
Employment
Source: Self-asserted source
M. Sohel Rahman

Education and qualifications (1)

KING'S COLLEGE LONDON: LONDON, ENGLAND, GB

2005-09-28 to 2008-05-01 | Ph.D. (COMPUTER SCIENCE)
Education
Source: Self-asserted source
M. Sohel Rahman

Funding (4)

Commonwealth Fellow

2015-01 to 2015-03 | Award
Commonwealth Scholarship Commission (London, GB)
Source: Self-asserted source
M. Sohel Rahman

Advances in Algorithms for Next Generation Biological Sequences

2014-01 to 2014-12 | Grant
British Council (Dhaka, BD)
Source: Self-asserted source
M. Sohel Rahman

Commonwealth Fellow

2013-01 to 2013-03 | Award
Commonwealth Scholarship Commission (London, GB)
Source: Self-asserted source
M. Sohel Rahman

Commonwealth Scholarship for Ph.D.

2005-09 to 2008-05 | Award
Commonwealth Scholarship Commission (London, GB)
Source: Self-asserted source
M. Sohel Rahman

Works (50 of 170)

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Page 1 of 4

ConVerSum: A Contrastive Learning-Based Approach for Data-Scarce Solution of Cross-Lingual Summarization Beyond Direct Equivalents

ACM Transactions on Asian and Low-Resource Language Information Processing
2025-03-07 | Journal article
DOI: 10.1145/3722109
Contributors: Sanzana Karim Lora; M. Sohel Rahman; Rifat Shahriyar
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Image Contrast Enhancement using Fuzzy Logic with Metaheuristics

2024-12-19 | Conference paper
DOI: 10.1145/3704522.3704542
Contributors: Mohimenul Kabir; Jaiaid Mobin; Ahmad Hassanat; M Sohel Rahman
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Crossref

Quantifying Pathological Progression from Single-Cell Data

2024-12-03 | Preprint
DOI: 10.1101/2024.11.27.625593
Contributors: Samin Rahman Khan; M. Sohel Rahman; Md. Abul Hassan Samee
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Crossref

An Agent-Based Modeling of COVID-19: Validation, Analysis, and Recommendations

Cognitive Computation
2024-07 | Journal article
DOI: 10.1007/s12559-020-09801-w
Contributors: Md. Salman Shamil; Farhanaz Farheen; Nabil Ibtehaz; Irtesam Mahmud Khan; M. Sohel Rahman
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Crossref

CRISPR-DIPOFF: an interpretable deep learning approach for CRISPR Cas-9 off-target prediction

Briefings in Bioinformatics
2024-01-22 | Journal article
DOI: 10.1093/bib/bbad530
Contributors: Md Toufikuzzaman; Md Abul Hassan Samee; M Sohel Rahman
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Soft-Touch or Hard-Touch: Quantifying Touches through A New System Focusing on A Pool Touchpad for Measuring Timing of Swimmers

2023-12-21 | Conference paper
DOI: 10.1145/3629188.3629194
Contributors: Adnan Quaium; Md. Ashraful Islam; M. Sohel Rahman; A. B. M. Alim Al Islam
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CRISPR-DIPOFF: An Interpretable Deep Learning Approach for CRISPR Cas-9 Off-Target Prediction

2023-08-06 | Preprint
DOI: 10.1101/2023.08.05.552139
Contributors: Md. Toufikuzzaman; Md. Abul Hassan Samee; M Sohel Rahman
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Crossref

Align-gram: Rethinking the Skip-gram Model for Protein Sequence Analysis

The Protein Journal
2023-04 | Journal article
DOI: 10.1007/s10930-023-10096-7
Contributors: Nabil Ibtehaz; S. M. Shakhawat Hossain Sourav; Md. Shamsuzzoha Bayzid; M. Sohel Rahman
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MAMMLE: A Framework for Phylogeny Estimation Based on Multiobjective Application-aware Multiple Sequence Alignment and Maximum Likelihood Ensemble

Journal of Computational Biology
2023-03-01 | Journal article
DOI: 10.1089/cmb.2021.0533
Contributors: Muhammad Ali Nayeem; Naser Anjum Samudro; M. Saifur Rahman; M. Sohel Rahman
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QT-GILD: Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data

2022 | Book chapter
DOI: 10.1007/978-3-031-04749-7_10
Contributors: Sazan Mahbub; Shashata Sawmya; Arpita Saha; Rezwana Reaz; M. Sohel Rahman; Md. Shamsuzzoha Bayzid
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PPG2ABP: Translating Photoplethysmogram (PPG) Signals to Arterial Blood Pressure (ABP) Waveforms

Bioengineering
2022-11-15 | Journal article
DOI: 10.3390/bioengineering9110692
Contributors: Nabil Ibtehaz; Sakib Mahmud; Muhammad E. H. Chowdhury; Amith Khandakar; Muhammad Salman Khan; Mohamed Arselene Ayari; Anas M. Tahir; M. Sohel Rahman
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Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data

Journal of Computational Biology
2022-11-01 | Journal article
DOI: 10.1089/cmb.2022.0212
Contributors: Sazan Mahbub; Shashata Sawmya; Arpita Saha; Rezwana Reaz; M. Sohel Rahman; Md. Shamsuzzoha Bayzid
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Computing the longest common almost-increasing subsequence

Theoretical Computer Science
2022-09 | Journal article
DOI: 10.1016/j.tcs.2022.07.021
Contributors: Mohammad Tawhidul Hasan Bhuiyan; Muhammad Rashed Alam; M. Sohel Rahman
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Multinomial Convolutions for Joint Modeling of Regulatory Motifs and Sequence Activity Readouts

Genes
2022-09-08 | Journal article
DOI: 10.3390/genes13091614
Contributors: Minjun Park; Salvi Singh; Samin Rahman Khan; Mohammed Abid Abrar; Francisco Grisanti; M. Sohel Rahman; Md. Abul Hassan Samee
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EDITH : ECG Biometrics Aided by Deep Learning for Reliable Individual Authentication

IEEE Transactions on Emerging Topics in Computational Intelligence
2022-08 | Journal article
DOI: 10.1109/TETCI.2021.3131374
Contributors: Nabil Ibtehaz; Muhammad E. H. Chowdhury; Amith Khandakar; Serkan Kiranyaz; M. Sohel Rahman; Anas Tahir; Yazan Qiblawey; Tawsifur Rahman
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Epstein-Barr virus nuclear antigen proteins deploy diverse mechanisms to bind the human genome

2022-07-19 | Preprint
DOI: 10.1101/2022.07.18.500442
Contributors: Md. Redwanul Haque; Abdur Rashid Tushar; Minjun Park; Chang In Moon; M. Sohel Rahman; Md. Abul Hassan Samee
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Crossref

DeepBend: An Interpretable Model of DNA Bendability

2022-07-07 | Preprint
DOI: 10.1101/2022.07.06.499067
Contributors: Samin Rahman Khan; Sadman Sakib; M. Sohel Rahman; Md. Abul Hassan Samee
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DeepBend: An Interpretable Model of DNA Bendability

2022-07-07 | Preprint
DOI: 10.21203/rs.3.rs-1795183/v1
Contributors: Samin Rahman Khan; Sadman Sakib; M. Sohel Rahman; Md. Abul Hassan Samee
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An Exploratory Study of Online Job Portal Data of the ICT Sector in Bangladesh: Analysis, Recommendations and Preliminary Implications for ICT Curriculum Reform

Education Sciences
2022-06-21 | Journal article
DOI: 10.3390/educsci12070423
Contributors: Sheikh Saifur Rahman Jony; Tsuyoshi Kano; Ryotaro Hayashi; Norihiko Matsuda; M. Sohel Rahman
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Revisiting segmentation of lung tumors from CT images

Computers in Biology and Medicine
2022-05 | Journal article
DOI: 10.1016/j.compbiomed.2022.105385
Contributors: Farhanaz Farheen; Md. Salman Shamil; Nabil Ibtehaz; M. Sohel Rahman
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Succinylated lysine residue prediction revisited

2022-05-20 | Preprint
DOI: 10.1101/2022.05.20.492505
Contributors: Shehab Sarar Ahmed; Zaara Tasnim Rifat; Mohammad Saifur Rahman; M. Sohel Rahman
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Characterization of intrinsically disordered regions in proteins informed by human genetic diversity

PLOS Computational Biology
2022-03-11 | Journal article
DOI: 10.1371/journal.pcbi.1009911
Contributors: Shehab S. Ahmed; Roland L. Dunbrack; Zaara T. Rifat; Ruchi Lohia; Arthur J. Campbell; A. Keith Dunker; M. Sohel Rahman; Sumaiya Iqbal
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A Machine Learning-based Approach for Groundwater Mapping

Natural Resources Research
2022-02 | Journal article
DOI: 10.1007/s11053-021-09977-4
Contributors: Rashed Uz Zzaman; Sara Nowreen; Irtesam Mahmud Khan; Md. Rajibul Islam; Nabil Ibtehaz; M. Saifur Rahman; Anwar Zahid; Dilruba Farzana; Afroza Sharmin; M. Sohel Rahman
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Neural Network-Based Undersampling Techniques

IEEE Transactions on Systems, Man, and Cybernetics: Systems
2022-02 | Journal article
DOI: 10.1109/TSMC.2020.3016283
Contributors: Md Adnan Arefeen; Sumaiya Tabassum Nimi; M. Sohel Rahman
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A Shallow U-Net Architecture for Reliably Predicting Blood Pressure (BP) from Photoplethysmogram (PPG) and Electrocardiogram (ECG) Signals

Sensors
2022-01-25 | Journal article
DOI: 10.3390/s22030919
Contributors: Sakib Mahmud; Nabil Ibtehaz; Amith Khandakar; Anas M. Tahir; Tawsifur Rahman; Khandaker Reajul Islam; Md Shafayet Hossain; M. Sohel Rahman; Farayi Musharavati; Mohamed Arselene Ayari et al.
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A contour property based approach to segment nuclei in cervical cytology images

BMC Medical Imaging
2021-12 | Journal article
DOI: 10.1186/s12880-020-00533-9
Contributors: Iram Tazim Hoque; Nabil Ibtehaz; Saumitra Chakravarty; M. Saifur Rahman; M. Sohel Rahman
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The Disproportionate Impact of COVID-19 among Undocumented Immigrants and Racial Minorities in the US

International Journal of Environmental Research and Public Health
2021-12-02 | Journal article
DOI: 10.3390/ijerph182312708
Contributors: Mohammad Tawhidul Hasan Bhuiyan; Irtesam Mahmud Khan; Sheikh Saifur Rahman Jony; Renee Robinson; Uyen-Sa D. T. Nguyen; David Keellings; M. Sohel Rahman; Ubydul Haque
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Analyzing Predictors of Control Measures and Psychosocial Problems Associated with COVID-19 Pandemic: Evidence from Eight Countries

Behavioral Sciences
2021-07 | Journal article | Author
DOI: 10.3390/bs11080106
Contributors: Sheikh Saifur Rahman Jony; Md Ubydul Haque; Nathaniel J. Webb; Emily Spence; Dr. Md. Siddikur Rahman; Associate Professor Nasrin Aghamohammadi; Yongchan Lie; ARACELY ANGULO-MOLINA; Sushmitha Ananth; Xuelian Ren et al.
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Multidisciplinary Digital Publishing Institute

ADACT: a tool for analysing (dis)similarity among nucleotide and protein sequences using minimal and relative absent words

Bioinformatics
2021-06-16 | Journal article
DOI: 10.1093/bioinformatics/btaa853
Contributors: Mujtahid Akon; Muntashir Akon; Mohimenul Kabir; M Saifur Rahman; M Sohel Rahman; Cowen Lenore
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Predicting pulmonary function from the analysis of voice: a machine learning approach

2021-05-13 | Other
DOI: 10.1101/2021.05.11.21256997
Contributors: Md. Zahangir Alam; Albino Simonetti; Rafaelle Billantino; Nick Tayler; Chris Grainge; Pandula Siribaddana; S. A. Reza Nouraei; James Batchelor; M. Sohel Rahman; Eliane V. Mancuzo et al.
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Agree-to-Disagree (A2D): A Deep Learning-Based Framework for Authorship Discrimination Task in Corpus-Specificity Free Manner

IEEE Access
2020 | Journal article
DOI: 10.1109/ACCESS.2020.3021658
Contributors: Md. Tawkat Islam Khondaker; Junaed Younus Khan; Tanvir Alam; M. Sohel Rahman
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CRISPRpred(SEQ): a sequence-based method for sgRNA on target activity prediction using traditional machine learning

BMC Bioinformatics
2020-12 | Journal article
DOI: 10.1186/s12859-020-3531-9
Contributors: Ali Haisam Muhammad Rafid; Md. Toufikuzzaman; Mohammad Saifur Rahman; M. Sohel Rahman
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Comprehensive characterization of amino acid positions in protein structures reveals molecular effect of missense variants

Proceedings of the National Academy of Sciences
2020-11-10 | Journal article
DOI: 10.1073/pnas.2002660117
Contributors: Sumaiya Iqbal; Eduardo Pérez-Palma; Jakob B. Jespersen; Patrick May; David Hoksza; Henrike O. Heyne; Shehab S. Ahmed; Zaara T. Rifat; M. Sohel Rahman; Kasper Lage et al.
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Toward Preparing a Knowledge Base to Explore Potential Drugs and Biomedical Entities Related to COVID-19: Automated Computational Approach

JMIR Medical Informatics
2020-11-10 | Journal article
DOI: 10.2196/21648
Contributors: Junaed Younus Khan; Md Tawkat Islam Khondaker; Iram Tazim Hoque; Hamada R H Al-Absi; Mohammad Saifur Rahman; Reto Guler; Tanvir Alam; M Sohel Rahman
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Prediction of Lung Function in Adolescence Using Epigenetic Aging: A Machine Learning Approach

Methods and Protocols
2020-11-09 | Journal article
DOI: 10.3390/mps3040077
Contributors: Md Adnan Arefeen; Sumaiya Tabassum Nimi; M. Sohel Rahman; S. Hasan Arshad; John W. Holloway; Faisal I. Rezwan
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Obesity in Qatar: A Case-Control Study on the Identification of Associated Risk Factors

Diagnostics
2020-10-29 | Journal article
DOI: 10.3390/diagnostics10110883
Contributors: Md. Tawkat Islam Khondaker; Junaed Younus Khan; Mahmoud Ahmed Refaee; Nady El Hajj; M. Sohel Rahman; Tanvir Alam
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Convolutional Neural Network Based Ensemble Approach for Homoglyph Recognition

Mathematical and Computational Applications
2020-10-21 | Journal article
DOI: 10.3390/mca25040071
Contributors: Md. Taksir Hasan Majumder; Md. Mahabur Rahman; Anindya Iqbal; M. Sohel Rahman
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Prediction of Lung Function in Adolescence Using Epigenetic Aging: A Machine Learning Approach

2020-09-08 | Other
DOI: 10.20944/preprints202009.0168.v1
Contributors: Md. Adnan Arefeen; Sumaiya Tabassum Nimi; M. Sohel Rahman; S. Hasan Arshad; John W. Holloway; Faisal I. Rezwan
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Crossref

An Agent Based Modeling of COVID-19: Validation, Analysis, and Recommendations

2020-07-08 | Other
DOI: 10.1101/2020.07.05.20146977
Contributors: Md. Salman Shamil; Farhanaz Farheen; Nabil Ibtehaz; Irtesam Mahmud Khan; M. Sohel Rahman
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Crossref

Toward Preparing a Knowledge Base to Explore Potential Drugs and Biomedical Entities Related to COVID-19: Automated Computational Approach (Preprint)

2020-06-26 | Other
DOI: 10.2196/preprints.21648
Contributors: Junaed Younus Khan; Md Tawkat Islam Khondaker; Iram Tazim Hoque; Hamada R H Al-Absi; Mohammad Saifur Rahman; Reto Guler; Tanvir Alam; M Sohel Rahman
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Crossref

Analyzing hCov Genome Sequences: Predicting Virulence and Mutation

2020-06-03 | Preprint
DOI: 10.1101/2020.06.03.131987
Contributors: Shashata Sawmya; Arpita Saha; Sadia Tasnim; Md. Toufikuzzaman; Naser Anjum; Ali Haisam Muhammad Rafid; M. Saifur Rahman; M. Sohel Rahman
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COVID-19 in China: Risk Factors and R0 Revisited

2020-05-22 | Other
DOI: 10.1101/2020.05.18.20104703
Contributors: Irtesam Mahmud Khan; Wenyi Zhang; Sumaira Zafar; Yong Wang; Junyu He; Hailon Sun; Ubydul Haque; M. Sohel Rahman
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Burden analysis of missense variants in 1,330 disease-associated genes on 3D provides insights into the mutation effects

2019-07-04 | Other
DOI: 10.1101/693259
Contributors: Sumaiya Iqbal; Jakob B. Jespersen; Eduardo Perez-Palma; Patrick May; David Hoksza; Henrike O. Heyne; Shehab S. Ahmed; Zaara T. Rifat; M. Sohel Rahman; Kasper Lage et al.
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A heuristic aided Stochastic Beam Search algorithm for solving the transit network design problem

Swarm and Evolutionary Computation
2019-05 | Journal article
DOI: 10.1016/j.swevo.2019.02.007
Contributors: Kazi Ashik Islam; Ibraheem Muhammad Moosa; Jaiaid Mobin; Muhammad Ali Nayeem; M. Sohel Rahman
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Crossref

CRISPRpred(SEQ): a sequence based tool for sgRNA on target activity prediction [(almost) beating Deep Learning pipelines by traditional machine learning]

2019-05-30 | Other
DOI: 10.1101/655779
Contributors: Ali Haisam Muhammad Rafid; Md. Toufikuzzaman; Mohammad Saifur Rahman; M. Sohel Rahman
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Crossref

DPP-PseAAC: A DNA-binding protein prediction model using Chou’s general PseAAC

Journal of Theoretical Biology
2018-09 | Journal article
DOI: 10.1016/j.jtbi.2018.05.006
Contributors: M. Saifur Rahman; Swakkhar Shatabda; Sanjay Saha; M. Kaykobad; M. Sohel Rahman
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Using Adaptive Heartbeat Rate on Long-Lived TCP Connections

IEEE/ACM Transactions on Networking
2018-02 | Journal article
DOI: 10.1109/TNET.2017.2774275
Contributors: M. Saifur Rahman; Md. Yusuf Sarwar Uddin; Tahmid Hasan; M. Sohel Rahman; M. Kaykobad
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Corrigendum to "Transit network design by genetic algorithm with elitism" [Transport. Res. Part C: Emerg. Technol. 46 (2014) 30-45]

Transportation Research Part C: Emerging Technologies
2017 | Journal article
DOI: 10.1016/j.trc.2017.02.012
EID:

2-s2.0-85013636515
Contributors: Nayeem, M.A.; Rahman, M.K.; Rahman, M.S.
Source: Self-asserted source
M. Sohel Rahman via Scopus - Elsevier

HaVec: An Efficient de Bruijn Graph Construction Algorithm for Genome Assembly

International Journal of Genomics
2017 | Journal article
DOI: 10.1155/2017/6120980
Contributors: Mahfuzer Rahman Limon; Ratul Sharker; Sajib Biswas; M. Sohel Rahman
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Palindromic Subsequence Automata and Longest Common Palindromic Subsequence

Mathematics in Computer Science
2017 | Journal article
DOI: 10.1007/s11786-016-0288-7
EID:

2-s2.0-85011661913
Contributors: Hasan, M.M.; Islam, A.S.M.S.; Rahman, M.S.; Sen, A.
Source: Self-asserted source
M. Sohel Rahman via Scopus - Elsevier
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Peer review (3 reviews for 3 publications/grants)

Review activity for Frontiers of Information Technology & Electronic Engineering. (1)
Review activity for iScience. (1)
Review activity for PloS one. (1)
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