Personal information

Activities

Employment (3)

Brigham Young University: Provo, Utah, US

2019-08-01 to present | Associate Professor (Department of Physics and Astronomy)
Employment
Source: Self-asserted source
Mark Transtrum

Brigham Young University: Provo, UT, US

2013-08 to 2019-07 | Assistant Professor (Physics & Astronomy)
Employment
Source: Self-asserted source
Mark Transtrum

University of Texas M D Anderson Cancer Center: Houston, TX, US

2011-08 to 2013-08 | Postdoctoral Research fellow (Bioinformatics and Computational Biology)
Employment
Source: Self-asserted source
Mark Transtrum

Education and qualifications (2)

Cornell University: Ithaca, New York, US

2006-08-01 to 2011-08-01 | Ph.D. (Physics)
Education
Source: Self-asserted source
Mark Transtrum

Brigham Young University: Provo, Utah, US

2006-08-01 | B.S. (Physics & Astronomy)
Education
Source: Self-asserted source
Mark Transtrum

Works (43)

Impact of submicron Nb3Sn stoichiometric surface defects on high-field superconducting radiofrequency cavity performance

Physical Review Research
2024-11-13 | Journal article
Contributors: Sarah A. Willson; Aiden V. Harbick; Liana Shpani; Van Do; Helena Lew-Kiedrowska; Matthias U. Liepe; Mark K. Transtrum; S. J. Sibener
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Crossref

Information geometry analysis example for absolute and relative transmission loss in a shallow ocean

JASA Express Letters
2024-07-01 | Journal article
Contributors: Jay C. Spendlove; Tracianne B. Neilsen; Mark K. Transtrum
Source: check_circle
Crossref

K-Means Clustering of 51 Geospatial Layers Identified for Use in Continental-Scale Modeling of Outdoor Acoustic Environments

Applied Sciences
2023-07-12 | Journal article
Contributors: Katrina Pedersen; Ryan R. Jensen; Lucas K. Hall; Mitchell C. Cutler; Mark K. Transtrum; Kent L. Gee; Shane V. Lympany
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Integration of Physics- and Data-Driven Power System Models in Transient Analysis After Major Disturbances

IEEE Systems Journal
2023-03 | Journal article
Contributors: Aleksandar A. Sarić; Mark K. Transtrum; Andrija T. Sarić; Aleksandar M. Stanković
Source: check_circle
Crossref

Information geometry for multiparameter models: new perspectives on the origin of simplicity

Reports on Progress in Physics
2023-03-01 | Journal article
Contributors: Katherine N Quinn; Michael C Abbott; Mark K Transtrum; Benjamin B Machta; James P Sethna
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Crossref

Extending OpenKIM with an Uncertainty Quantification Toolkit for Molecular Modeling

2022-10 | Conference paper
Contributors: Yonatan Kurniawan; Cody L. Petrie; Mark K. Transtrum; Ellad B. Tadmor; Ryan S. Elliott; Daniel S. Karls; Mingjian Wen
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Crossref

Bayesian, frequentist, and information geometric approaches to parametric uncertainty quantification of classical empirical interatomic potentials

The Journal of Chemical Physics
2022-06-07 | Journal article
Contributors: Yonatan Kurniawan; Cody L. Petrie; Kinamo J. Williams, Jr.; Mark K. Transtrum; Ellad B. Tadmor; Ryan S. Elliott; Daniel S. Karls; Mingjian Wen
Source: check_circle
Crossref

State Estimation Model Reduction Through the Manifold Boundary Approximation Method

IEEE Transactions on Power Systems
2022-01 | Journal article
Contributors: Vanja Svenda; Mark Transtrum; Benjamin Francis; Andrija Saric; Aleksandar Stankovic
Source: check_circle
Crossref

Data-Driven Classification, Reduction, Parameter Identification and State Extension in Hybrid Power Systems

IEEE Transactions on Power Systems
2021-05 | Journal article
Contributors: Andrija T. Saric; Mark K. Transtrum; Aleksandar M. Stankovic
Source: check_circle
Crossref

Symbolic Regression for Data-Driven Dynamic Model Refinement in Power Systems

IEEE Transactions on Power Systems
2021-05 | Journal article
Contributors: Andrija T. Saria; Aleksandar A. Saric; Mark K. Transtrum; Aleksandar M. Stankovic
Source: check_circle
Crossref

Effect of the density of states at the Fermi level on defect free energies and superconductivity: A case study of Nb3Sn

Physical Review B
2021-03-04 | Journal article
Contributors: Nathan S. Sitaraman; Michelle M. Kelley; Ryan D. Porter; Matthias U. Liepe; Tomás A. Arias; Jared Carlson; Alden R. Pack; Mark K. Transtrum; Ravishankar Sundararaman
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Crossref

Analysis of magnetic vortex dissipation in Sn-segregated boundaries in Nb3Sn superconducting RF cavities

Physical Review B
2021-01-19 | Journal article
Contributors: Jared Carlson; Alden Pack; Mark K. Transtrum; Jaeyel Lee; David N. Seidman; Danilo B. Liarte; Nathan S. Sitaraman; Alen Senanian; Michelle M. Kelley; James P. Sethna et al.
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Vortex nucleation in superconductors within time-dependent Ginzburg-Landau theory in two and three dimensions: Role of surface defects and material inhomogeneities

Physical Review B
2020-04-21 | Journal article
Contributors: Alden R. Pack; Jared Carlson; Spencer Wadsworth; Mark K. Transtrum
Source: check_circle
Crossref

Model Boundary Approximation Method as a Unifying Framework for Balanced Truncation and Singular Perturbation Approximation

IEEE Transactions on Automatic Control
2019-11 | Journal article
Contributors: Philip E. Pare; David Grimsman; Alma T. Wilson; Mark K. Transtrum; Sean Warnick
Source: check_circle
Crossref

Effect of extreme temperatures on soil: A calorimetric approach

Thermochimica Acta
2018-12 | Journal article
Contributors: Lee D. Hansen; Nieves Barros; Mark K. Transtrum; Jose A. Rodríguez-Añón; Jorge Proupín; Verónica Piñeiro; Ander Arias-González; Nahia Gartzia
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The Spectrum of Mechanism-Oriented Models and Methods for Explanations of Biological Phenomena

Processes
2018-05-14 | Journal article
Contributors: C. Hunt; Ahmet Erdemir; William Lytton; Feilim Mac Gabhann; Edward Sander; Mark Transtrum; Lealem Mulugeta
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Crossref
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Preferred source (of 2)‎

Theoretical estimates of maximum fields in superconducting resonant radio frequency cavities: stability theory, disorder, and laminates

Superconductor Science and Technology
2017-01-04 | Journal article
Contributors: Danilo B Liarte; Sam Posen; Mark K Transtrum; Gianluigi Catelani; Matthias Liepe; James P Sethna
Source: Self-asserted source
Mark Transtrum via Crossref Metadata Search

Measurement-Directed Reduction of Dynamic Models in Power Systems

IEEE Transactions on Power Systems
2016 | Journal article
Contributors: Mark K. Transtrum; Andrija T. Saric; A. M. Stankovic
Source: Self-asserted source
Mark Transtrum via Crossref Metadata Search

Mechanisms of In Vivo Ribosome Maintenance Change in Response to Nutrient Signals

Molecular & Cellular Proteomics
2016 | Journal article
Contributors: Andrew D. Mathis; Bradley C. Naylor; Richard H. Carson; Eric Evans; Justin Harwell; Jared Knecht; Eric Hexem; Fredrick F. Peelor; Benjamin F. Miller; Karyn L. Hamilton et al.
Source: Self-asserted source
Mark Transtrum via Crossref Metadata Search

The Limitations of Model-Based Experimental Design and Parameter Estimation in Sloppy Systems

PLOS Computational Biology
2016-12-06 | Journal article
Contributors: Andrew White; Attila Csikász-Nagy; Malachi Tolman; Howard D. Thames; Hubert Rodney Withers; Kathy A. Mason; Mark K. Transtrum
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Crossref

Ginzburg-Landau theory of the superheating field anisotropy of layered superconductors

Physical Review B
2016-10 | Journal article
Contributors: Danilo B. Liarte; Mark K. Transtrum; James P. Sethna
Source: Self-asserted source
Mark Transtrum via Crossref Metadata Search

Dynamic model estimation for power system areas from boundary measurements

2016 IEEE Power and Energy Society General Meeting (PESGM)
2016-07 | Conference paper
Contributors: Andrija T. Saric; Mark K. Transtrum; Aleksandar M. Stankovic
Source: Self-asserted source
Mark Transtrum via Crossref Metadata Search

Information geometry for model verification in energy systems

2016 Power Systems Computation Conference (PSCC)
2016-06 | Conference paper
Contributors: Mark K. Transtrum; Andrija T. Saric; Alex M. Stankovic
Source: Self-asserted source
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Bridging Mechanistic and Phenomenological Models of Complex Biological Systems

PLOS Computational Biology
2016-05 | Journal article
Contributors: Mark K. Transtrum; Peng Qiu; Yishao Zhou
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Enzyme-catalyzed and binding reaction kinetics determined by titration calorimetry

Biochimica et Biophysica Acta (BBA) - General Subjects
2016-05 | Journal article
Contributors: Lee D. Hansen; Mark K. Transtrum; Colette Quinn; Neil Demarse
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Shielding Superconductors with Thin Films as Applied to rf Cavities for Particle Accelerators

Physical Review Applied
2015-10 | Journal article
Contributors: Sam Posen; Mark K. Transtrum; Gianluigi Catelani; Matthias U. Liepe; James P. Sethna
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Sloppiness and the Geometry of Parameter Space

Uncertainty in Biology
2015-10 | Other
Contributors: Brian K. Mannakee; Aaron P. Ragsdale; Mark K. Transtrum; Ryan N. Gutenkunst
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A unified view of Balanced Truncation and Singular Perturbation Approximations

2015 American Control Conference (ACC)
2015-07 | Conference paper
Contributors: Philip E. Pare; Alma T. Wilson; Mark K. Transtrum; Sean C. Warnick
Source: Self-asserted source
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Perspective: Sloppiness and emergent theories in physics, biology, and beyond

The Journal of Chemical Physics
2015-07-07 | Journal article
Contributors: Mark K. Transtrum; Benjamin B. Machta; Kevin S. Brown; Bryan C. Daniels; Christopher R. Myers; James P. Sethna
Source: Self-asserted source
Mark Transtrum via Crossref Metadata Search

Enzyme kinetics determined by single-injection isothermal titration calorimetry

Methods
2015-04 | Journal article
Contributors: Mark K. Transtrum; Lee D. Hansen; Colette Quinn
Source: Self-asserted source
Mark Transtrum via Crossref Metadata Search

PO-0851: LQ model with large fraction sizes leads to underestimation of isoeffect doses

Radiotherapy and Oncology
2014 | Journal article
Contributors: H. Thames; T. Sheu; J. Molkentine; M. Transtrum; T. Buchholz; H.R. Withers; K. Mason
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Mark Transtrum via Crossref Metadata Search

Model Reduction by Manifold Boundaries

Physical Review Letters
2014-08 | Journal article
Contributors: Mark K. Transtrum; Peng Qiu
Source: Self-asserted source
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Parameter Space Compression Underlies Emergent Theories and Predictive Models

Science
2013-10 | Journal article
Contributors: B. B. Machta; R. Chachra; M. K. Transtrum; J. P. Sethna
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Mark Transtrum via Crossref Metadata Search

Optimal experiment selection for parameter estimation in biological differential equation models

BMC Bioinformatics
2012 | Journal article
Contributors: Mark K Transtrum; Peng Qiu
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Structural susceptibility and separation of time scales in the van der Pol oscillator

Physical Review E
2012-08 | Journal article
Contributors: Ricky Chachra; Mark K. Transtrum; James P. Sethna
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Comment on “Sloppy models, parameter uncertainty, and the role of experimental design”

Molecular BioSystems
2011 | Journal article
Contributors: Ricky Chachra; Mark K. Transtrum; James P. Sethna
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Superheating field of superconductors within Ginzburg-Landau theory

Physical Review B
2011-03-04 | Journal article
Contributors: Mark K. Transtrum; Gianluigi Catelani; James P. Sethna
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Geometry of nonlinear least squares with applications to sloppy models and optimization

Physical Review E
2011-03-03 | Journal article
Contributors: Mark K. Transtrum; Benjamin B. Machta; James P. Sethna
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Why are Nonlinear Fits to Data so Challenging?

Physical Review Letters
2010-02-10 | Journal article
Contributors: Mark K. Transtrum; Benjamin B. Machta; James P. Sethna
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An analytic iterative approach to solving the time-independent Schrödinger equation

International Journal of Quantum Chemistry
2009 | Journal article
Contributors: Chad Junkermeier; Mark Transtrum; Manuel Berrondo
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BEYOND THE QUANTUM IN SNYDER SPACE

Beyond the Quantum
2007-09 | Conference paper
Contributors: J. F. S. van HUELE; M. K. TRANSTRUM
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A perturbative approach to Snyder space with applications

Journal of Physics A: Mathematical and General
2006-11 | Journal article
Contributors: Mark K Transtrum; Jean-François S Van Huele
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Commutation relations for functions of operators

Journal of Mathematical Physics
2005-06 | Journal article
Contributors: Mark K. Transtrum; Jean-François S. Van Huele
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Peer review (9 reviews for 8 publications/grants)

Review activity for Energies. (1)
Review activity for International journal of electrical power & energy systems. (2)
Review activity for Journal of computational and applied mathematics. (1)
Review activity for npj computational materials. (1)
Review activity for Physics letters. (1)
Review activity for PLoS computational biology. (1)
Review activity for PloS one. (1)
Review activity for Sustainability. (1)