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Employment (3)

Københavns Universitet: København K, DK

Employment
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University of Copenhagen

University of Copenhagen: Copenhagen, DK

2020-11 to present | Assistent professor (Department of Biology)
Employment
Source: Self-asserted source
Sarah Rennie

University of Copenhagen: Copenhagen, DK

2015-09 to 2020-10 | Postdoc (Department of Biology)
Employment
Source: Self-asserted source
Sarah Rennie

Education and qualifications (1)

University of Edinburgh: Edinburgh, GB

2010 to 2015 | PhD (Institute of Genetics and Molecular Medicine (IGMM))
Education
Source: Self-asserted source
Sarah Rennie

Works (22)

Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance

Cell Reports
2024 | Journal article | Author
SOURCE-WORK-ID:

9474678c-7064-452b-9066-42c6e7cba8a5

EID:

2-s2.0-85197507853

Contributors: Arnaud Stigliani; Renata Ialchina; Jiayi Yao; Dominika Czaplinska; Yifan Dai; Henriette Berg Andersen; Sarah Rennie; Robin Andersson; Stine Falsig Pedersen; Albin Sandelin
Source: check_circle
University of Copenhagen

High N6-methyladenosine-activated TCEAL8 mRNA is a novel pancreatic cancer marker

Cancer Science
2024 | Journal article | Author
SOURCE-WORK-ID:

858338be-ca7f-4fb5-94d9-3c3b8a2668e5

EID:

2-s2.0-85191736183

Contributors: Tomoaki Hara; Sikun Meng; Hiromichi Sato; Shotaro Tatekawa; Kazuki Sasaki; Yu Takeda; Yoshiko Tsuji; Yasuko Arao; Ken Ofusa; Toru Kitagawa et al.
Source: check_circle
University of Copenhagen

ALBA proteins facilitate cytoplasmic YTHDF-mediated reading of m6A in Arabidopsis

The EMBO Journal
2024-11-29 | Journal article
Contributors: Marlene Reichel; Mathias Due Tankmar; Sarah Rennie; Laura Arribas-Hernández; Martin Lewinski; Tino Köster; Naiqi Wang; Anthony A Millar; Dorothee Staiger; Peter Brodersen
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Crossref
grade
Preferred source (of 2)‎

Deep Learning for Elucidating Modifications to RNA—Status and Challenges Ahead

Genes
2024-05 | Journal article | Author
Contributors: Sarah Rennie
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Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 3)‎

Recommendations for Bioinformatic Tools in lncRNA Research

Current Bioinformatics
2024-01 | Journal article
Contributors: Rebecca Distefano; Mirolyuba Ilieva; Sarah Rennie; Shizuka Uchida
Source: check_circle
Crossref

Plant YTHDF proteins are direct effectors of antiviral immunity against an N6‐methyladenosine‐containing RNA virus

The EMBO Journal
2023-09-18 | Journal article
Contributors: Mireya Martínez‐Pérez; Frederic Aparicio; Laura Arribas‐Hernández; Mathias Due Tankmar; Sarah Rennie; Sören von Bülow; Kresten Lindorff‐Larsen; Peter Brodersen; Vicente Pallas
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Crossref
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Preferred source (of 2)‎

Benchmarking RNA Editing Detection Tools

BioTech
2023-08-26 | Journal article
Contributors: David Rodríguez Morales; Sarah Rennie; Shizuka Uchida
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Crossref
grade
Preferred source (of 2)‎

Systematic Analysis of Long Non-Coding RNAs in Inflammasome Activation in Monocytes/Macrophages

Non-Coding RNA
2023-08-25 | Journal article
Contributors: Na Qian; Rebecca Distefano; Mirolyuba Ilieva; Jens Hedelund Madsen; Sarah Rennie; Shizuka Uchida
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Crossref
grade
Preferred source (of 3)‎

DoxoDB: A Database for the Expression Analysis of Doxorubicin-Induced lncRNA Genes

Non-Coding RNA
2023-07-13 | Journal article
Contributors: Rebecca Distefano; Mirolyuba Ilieva; Jens Hedelund Madsen; Sarah Rennie; Shizuka Uchida
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Crossref
grade
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Transcription factor expression is the main determinant of variability in gene co‐activity

Molecular Systems Biology
2023-07-11 | Journal article
Contributors: Lucas van Duin; Robert Krautz; Sarah Rennie; Robin Andersson
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Crossref
grade
Preferred source (of 2)‎

T2DB: A Web Database for Long Non-Coding RNA Genes in Type II Diabetes

Non-Coding RNA
2023-05-08 | Journal article
Contributors: Rebecca Distefano; Mirolyuba Ilieva; Jens Hedelund Madsen; Hideshi Ishii; Masanori Aikawa; Sarah Rennie; Shizuka Uchida
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Crossref
grade
Preferred source (of 3)‎

Potential Usages of A-to-I RNA Editing Patterns as Diagnostic Biomarkers

American Journal of Physiology-Cell Physiology
2023-02-27 | Journal article
Part of ISSN: 0363-6143
Part of ISSN: 1522-1563
Contributors: David Rodriguez-Morales; Mirolyuba Ilieva; Sarah Rennie; Shizuka Uchida
Source: Self-asserted source
Sarah Rennie
grade
Preferred source (of 2)‎

Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

eLife
2022-11-15 | Journal article
Part of ISSN: 2050-084X
Contributors: Hjörleifur Einarsson; Marco Salvatore; Christian Vaagensø; Nicolas Alcaraz; Jette Bornholdt; Sarah Rennie; Robin Andersson
Source: Self-asserted source
Sarah Rennie
grade
Preferred source (of 2)‎

Plant YTHDF proteins are direct effectors of antiviral immunity against an m<sup>6</sup>A-containing RNA virus

[]
2022-10-21 | Preprint
Contributors: Mireya Martínez-Pérez; Frederic Aparicio; Laura Arribas-Hernández; Mathias Due Tankmar; Sarah Rennie; Peter Brodersen; Vicente Pallas
Source: Self-asserted source
Sarah Rennie

Transcription factor expression is the main determinant of variability in gene co-activity

2022-10-14 | Preprint
Contributors: Lucas van Duin; Robert Krautz; Sarah Rennie; Robin Andersson
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Nature Communications
2021 | Journal article | Author
SOURCE-WORK-ID:

d4bf9ac0-cb7e-4ffc-81e8-17b237ace431

EID:

2-s2.0-85107388625

Contributors: Mathys Grapotte; Manu Saraswat; Chloé Bessière; Christophe Menichelli; Jordan A. Ramilowski; Jessica Severin; Yoshihide Hayashizaki; Masayoshi Itoh; Michihira Tagami; Mitsuyoshi Murata et al.
Source: check_circle
University of Copenhagen

Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

eLife
2021-09 | Journal article
Part of ISSN: 2050-084X
Contributors: Laura Arribas-Hernández; Sarah Rennie; Tino Köster; Carlotta Porcelli; Martin Lewinski; Dorothee Staiger; Robin Andersson; Peter Brodersen
Source: Self-asserted source
Sarah Rennie via Crossref Metadata Search
grade
Preferred source (of 2)‎

The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation

eLife
2021-09 | Journal article
Part of ISSN: 2050-084X
Contributors: Laura Arribas-Hernández; Sarah Rennie; Michael Schon; Carlotta Porcelli; Balaji Enugutti; Robin Andersson; Michael D Nodine; Peter Brodersen
Source: Self-asserted source
Sarah Rennie via Crossref Metadata Search
grade
Preferred source (of 2)‎

Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

Nucleic Acids Research
2018-04-06 | Journal article
Part of ISSN: 0305-1048
Contributors: Sarah Rennie; Maria Dalby; Marta Lloret-Llinares; Stylianos Bakoulis; Christian Dalager Vaagensø; Torben Heick Jensen; Robin Andersson
Source: Self-asserted source
Sarah Rennie via Crossref Metadata Search
grade
Preferred source (of 2)‎

Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

Nature Communications
2018-02-05 | Journal article
Part of ISSN: 2041-1723
Contributors: Sarah Rennie; Maria Dalby; Lucas van Duin; Robin Andersson
Source: Self-asserted source
Sarah Rennie via Crossref Metadata Search
grade
Preferred source (of 2)‎

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

Database: The Journal of Biological Databases and Curation
2016 | Journal article | Author
SOURCE-WORK-ID:

ea64682a-e9e4-4573-96d3-21e38ad492ba

EID:

2-s2.0-85016128209

Contributors: Hans-Ioan Ienasescu; Kang Li; Robin Andersson; Morana Vitezic; Sarah Rennie; Yun Chen; Kristoffer Vitting-Seerup; Emil Lagoni; Mette Boyd; Jette Bornholdt Lange et al.
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University of Copenhagen

hyperTRIBER: a flexible R package for the analysis of differential RNA editing

Other
Contributors: Sarah Rennie; Daniel Heidar Magnusson; Robin Andersson
Source: Self-asserted source
Sarah Rennie via Crossref Metadata Search
grade
Preferred source (of 2)‎

Peer review (2 reviews for 2 publications/grants)

Review activity for Industrial crops and products. (1)
Review activity for Nature communications (1)