Personal information

Activities

Employment (1)

University of California Davis: Davis, CA, US

2017-07-01 to present | Assistant Professor (Plant Pathology)
Employment
Source: Self-asserted source
Joanne B Emerson

Education and qualifications (1)

University of California, Berkeley: Berkeley, California, US

2007-08-01 to 2012-12-12 | Ph.D. (Earth and Planetary Science)
Education
Source: Self-asserted source
Joanne B Emerson

Works (50 of 61)

Items per page:
Page 1 of 2

Diversity in the soil virosphere: to infinity and beyond?

Trends in Microbiology
2022 | Journal article
EID:

2-s2.0-85130921486

Part of ISSN: 18784380 0966842X
Contributors: Roux, S.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Predators of Soil Bacteria in Plant and Human Health

Phytobiomes Journal
2022 | Journal article
EID:

2-s2.0-85136123921

Part of ISSN: 24712906
Contributors: Martins, S.J.; Taerum, S.J.; Triplett, L.; Emerson, J.B.; Zasada, I.; de Toledo, B.F.; Kovac, J.; Martin, K.; Bull, C.T.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Soil pH influences the structure of virus communities at local and global scales

Soil Biology and Biochemistry
2022 | Journal article
EID:

2-s2.0-85123642474

Part of ISSN: 00380717
Contributors: Lee, S.; Sorensen, J.W.; Walker, R.L.; Emerson, J.B.; Nicol, G.W.; Hazard, C.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Solutions in microbiome engineering: prioritizing barriers to organism establishment

ISME Journal
2022 | Journal article
EID:

2-s2.0-85113749597

Part of ISSN: 17517370 17517362
Contributors: Albright, M.B.N.; Louca, S.; Winkler, D.E.; Feeser, K.L.; Haig, S.-J.; Whiteson, K.L.; Emerson, J.B.; Dunbar, J.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands

bioRxiv
2022 | Other
EID:

2-s2.0-85128836025

Part of ISSN: 26928205
Contributors: Santos-Medellín, C.; Estera-Molina, K.; Yuan, M.; Pett-Ridge, J.; Firestone, M.K.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands

Proceedings of the National Academy of Sciences of the United States of America
2022 | Journal article
EID:

2-s2.0-85141169303

Part of ISSN: 10916490 00278424
Contributors: Santos-Medellín, C.; Estera-Molina, K.; Yuan, M.; Pett-Ridge, J.; Firestone, M.K.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Substantial differences in soil viral community composition within and among four Northern California habitats

bioRxiv
2022 | Other
EID:

2-s2.0-85133458543

Part of ISSN: 26928205
Contributors: Durham, D.M.; Sieradzki, E.T.; ter Horst, A.M.; Santos-Medellín, C.; Bess, W.C.A.; Geonczy, S.E.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Substantial differences in soil viral community composition within and among four Northern California habitats

ISME Communications
2022-12-01 | Journal article
Contributors: Devyn M Durham; Ella T Sieradzki; Anneliek M ter Horst; Christian Santos-Medellín; C Winston A Bess; Sara E Geonczy; Joanne B Emerson
Source: check_circle
Crossref

RNA viral communities are structured by host plant phylogeny in oak and conifer leaves

Phytobiomes Journal
2022-04-19 | Journal article
Part of ISSN: 2471-2906
Source: Self-asserted source
Joanne B Emerson

Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes

Nature Communications
2021 | Journal article
EID:

2-s2.0-85116373672

Part of ISSN: 20411723
Contributors: Emerson, J.B.; Varner, R.K.; Wik, M.; Parks, D.H.; Neumann, R.B.; Johnson, J.E.; Singleton, C.M.; Woodcroft, B.J.; Tollerson, R.; Owusu-Dommey, A. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Dnase treatment improves viral enrichment in agricultural soil viromes

mSystems
2021 | Journal article
EID:

2-s2.0-85114999049

Part of ISSN: 23795077
Contributors: Sorensen, J.W.; Zinke, L.A.; ter Horst, A.M.; Santos-Medellín, C.; Schroeder, A.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

DNase treatment improves viral enrichment in agricultural soil viromes

bioRxiv
2021 | Other
EID:

2-s2.0-85110884378

Part of ISSN: 26928205
Contributors: Sorensen, J.W.; Zinke, L.A.; ter Horst, A.M.; Santos-Medellin, C.; Schroeder, A.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales

Environmental Microbiology
2021 | Journal article
EID:

2-s2.0-85096831998

Part of ISSN: 14622920 14622912
Contributors: Zinke, L.A.; Evans, P.N.; Santos-Medellín, C.; Schroeder, A.L.; Parks, D.H.; Varner, R.K.; Rich, V.I.; Tyson, G.W.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Experimental evidence for the impact of soil viruses on carbon cycling during surface plant litter decomposition

bioRxiv
2021 | Other
EID:

2-s2.0-85119309309

Part of ISSN: 26928205
Contributors: Albright, M.B.N.; Gallegos-Graves, L.V.; Feeser, K.L.; Montoya, K.; Emerson, J.B.; Shakya, M.; Dunbar, J.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation

PLoS ONE
2021 | Journal article
EID:

2-s2.0-85102095774

Part of ISSN: 19326203
Contributors: Wilson, R.M.; Zayed, A.A.; Crossen, K.B.; Woodcroft, B.; Tfaily, M.M.; Emerson, J.; Raab, N.; Hodgkins, S.B.; Verbeke, B.; Tyson, G. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
Preferred source (of 2)‎

Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations

Microbiome
2021 | Journal article
EID:

2-s2.0-85119975496

Part of ISSN: 20492618
Contributors: ter Horst, A.M.; Santos-Medellín, C.; Sorensen, J.W.; Zinke, L.A.; Wilson, R.M.; Johnston, E.R.; Trubl, G.G.; Pett-Ridge, J.; Blazewicz, S.J.; Hanson, P.J. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

RNA viral communities are structured by host plant phylogeny in oak and conifer leaves

bioRxiv
2021 | Other
EID:

2-s2.0-85123238021

Part of ISSN: 26928205
Contributors: Ter Horst, A.M.; Fudyma, J.D.; Bak, A.; Hwang, M.S.; Santos-Medellín, C.; Stevens, K.A.; Rizzo, D.M.; Al Rwahnih, M.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
Preferred source (of 2)‎

Soil viral communities are structured by pH at local and global scales

bioRxiv
2021 | Other
EID:

2-s2.0-85119310115

Part of ISSN: 26928205
Contributors: Lee, S.; Sorensen, J.W.; Walker, R.L.; Emerson, J.B.; Nicol, G.W.; Hazard, C.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities

ISME Journal
2021 | Journal article
EID:

2-s2.0-85101212753

Part of ISSN: 17517370 17517362
Contributors: Santos-Medellin, C.; Zinke, L.A.; ter Horst, A.M.; Gelardi, D.L.; Parikh, S.J.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Playing with FiRE: A genome resolved view of the soil microbiome responses to high severity forest wildfire

2021-08-17 | Other
Contributors: Amelia R. Nelson; Adrienne B. Narrowe; Charles C. Rhoades; Timothy S. Fegel; Rebecca A. Daly; Holly K. Roth; Rosalie K. Chu; Kaela K. Amundson; Sara E. Geonczy; Joanne B. Emerson et al.
Source: check_circle
Crossref
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Cauliflower mosaic virus (CaMV) Biology, Management, and Relevance to GM Plant Detection for Sustainable Organic Agriculture

Frontiers in Sustainable Food Systems
2020 | Journal article
EID:

2-s2.0-85083313747

Part of ISSN: 2571581X
Contributors: Bak, A.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Community-Driven Metadata Standards for Agricultural Microbiome Research

Phytobiomes Journal
2020 | Journal article
EID:

2-s2.0-85092665001

Part of ISSN: 24712906
Contributors: Dundore-Arias, J.P.; Eloe-Fadrosh, E.A.; Schriml, L.M.; Beattie, G.A.; Brennan, F.P.; Busby, P.E.; Calderon, R.B.; Castle, S.C.; Emerson, J.B.; Everhart, S.E. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Diverse arctic lake sediment microbiota shape methane emission temperature sensitivity

bioRxiv
2020 | Other
EID:

2-s2.0-85095650212

Part of ISSN: 26928205
Contributors: Emerson, J.B.; Varner, R.K.; Wik, M.; Parks, D.H.; Neumann, R.B.; Johnson, J.E.; Singleton, C.M.; Woodcroft, B.J.; Tollerson, R.; Owusu-Dommey, A. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Ecology and Global Impacts of Viruses

Encyclopedia of Virology: Volume 1-5, Fourth Edition
2020 | Book chapter
EID:

2-s2.0-85148776382

Contributors: Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales

bioRxiv
2020 | Other
EID:

2-s2.0-85102604631

Part of ISSN: 26928205
Contributors: Zinke, L.A.; Evans, P.N.; Schroeder, A.L.; Parks, D.H.; Varner, R.K.; Rich, V.I.; Tyson, G.W.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations

bioRxiv
2020 | Other
EID:

2-s2.0-85100115443

Part of ISSN: 26928205
Contributors: ter Horst, A.M.; Santos-Medellín, C.; Sorensen, J.W.; Zinke, L.A.; Wilson, R.M.; Johnston, E.R.; Trubl, G.G.; Pett-Ridge, J.; Blazewicz, S.J.; Hanson, P.J. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

The IsoGenie database: An interdisciplinary data management solution for ecosystems biology and environmental research

PeerJ
2020 | Journal article
EID:

2-s2.0-85090471114

Part of ISSN: 21678359
Contributors: Bolduc, B.; Hodgkins, S.B.; Varner, R.K.; Crill, P.M.; McCalley, C.K.; Chanton, J.P.; Tyson, G.W.; Riley, W.J.; Palace, M.; Duhaime, M.B. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities

bioRxiv
2020 | Other
EID:

2-s2.0-85098900681

Part of ISSN: 26928205
Contributors: Santos-Medellin, C.; Zinke, L.A.; ter Horst, A.M.; Gelardi, D.L.; Parikh, S.J.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
Preferred source (of 2)‎

Minimum information about an uncultivated virus genome (MIUVIG)

Nature Biotechnology
2019 | Journal article
EID:

2-s2.0-85055940945

Part of ISSN: 15461696 10870156
Contributors: Roux, S.; Adriaenssens, E.M.; Dutilh, B.E.; Koonin, E.V.; Kropinski, A.M.; Krupovic, M.; Kuhn, J.H.; Lavigne, R.; Brister, J.R.; Varsani, A. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
Preferred source (of 2)‎

Multiplex quantitative PCR for single-reaction genetically modified (GM) plant detection and identification of false-positive GM plants linked to Cauliflower mosaic virus (CaMV) infection

BMC Biotechnology
2019 | Journal article
EID:

2-s2.0-85074685450

Part of ISSN: 14726750
Contributors: Bak, A.; Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
Preferred source (of 2)‎

Soil viruses: A new hope

mSystems
2019 | Journal article
EID:

2-s2.0-85067410289

Part of ISSN: 23795077
Contributors: Emerson, J.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
Preferred source (of 2)‎

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

Nature Microbiology
2018 | Journal article
EID:

2-s2.0-85041121836

Part of ISSN: 20585276
Contributors: Probst, A.J.; Ladd, B.; Jarett, J.K.; Geller-Mcgrath, D.E.; Sieber, C.M.K.; Emerson, J.B.; Anantharaman, K.; Thomas, B.C.; Malmstrom, R.R.; Stieglmeier, M. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Genome-centric view of carbon processing in thawing permafrost

Nature
2018 | Journal article
EID:

2-s2.0-85050639321

Part of ISSN: 14764687 00280836
Contributors: Woodcroft, B.J.; Singleton, C.M.; Boyd, J.A.; Evans, P.N.; Emerson, J.B.; Zayed, A.A.F.; Hoelzle, R.D.; Lamberton, T.O.; McCalley, C.K.; Hodgkins, S.B. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Host-linked soil viral ecology along a permafrost thaw gradient

Nature Microbiology
2018 | Journal article
EID:

2-s2.0-85049969588

Part of ISSN: 20585276
Contributors: Emerson, J.B.; Roux, S.; Brum, J.R.; Bolduc, B.; Woodcroft, B.J.; Jang, H.B.; Singleton, C.M.; Solden, L.M.; Naas, A.E.; Boyd, J.A. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Seasonal variability of airborne particulate matter and bacterial concentrations in colorado homes

Atmosphere
2018 | Journal article
EID:

2-s2.0-85044819545

Part of ISSN: 20734433
Contributors: Clements, N.; Keady, P.; Emerson, J.B.; Fierer, N.; Miller, S.L.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Soil viruses are underexplored players in ecosystem carbon processing

bioRxiv
2018 | Other
EID:

2-s2.0-85095654061

Part of ISSN: 26928205
Contributors: Trubl, G.; Jang, H.B.; Roux, S.; Emerson, J.B.; Solonenko, N.; Vik, D.R.; Solden, L.; Ellenbogen, J.; Runyon, A.T.; Bolduc, B. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

mSystems
2018 | Journal article
EID:

2-s2.0-85054788438

Part of ISSN: 23795077
Contributors: Trubl, G.; Jang, H.B.; Roux, S.; Emerson, J.B.; Solonenko, N.; Vik, D.R.; Solden, L.; Ellenbogen, J.; Runyon, A.T.; Bolduc, B. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

Benchmarking viromics: An in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

PeerJ
2017 | Journal article
EID:

2-s2.0-85029704396

Part of ISSN: 21678359
Contributors: Roux, S.; Emerson, J.B.; Eloe-Fadrosh, E.A.; Sullivan, M.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier

High temporal variability in airborne bacterial diversity and abundance inside single-family residences

Indoor Air
2017 | Journal article
EID:

2-s2.0-84996564416

Part of ISSN: 16000668 09056947
Contributors: Emerson, J.B.; Keady, P.B.; Clements, N.; Morgan, E.E.; Awerbuch, J.; Miller, S.L.; Fierer, N.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Putative archaeal viruses from the mesopelagic ocean

PeerJ
2017 | Journal article
EID:

2-s2.0-85020765203

Part of ISSN: 21678359
Contributors: Vik, D.R.; Roux, S.; Brum, J.R.; Bolduc, B.; Emerson, J.B.; Padilla, C.C.; Stewart, F.J.; Sullivan, M.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems

Microbiome
2017 | Journal article
EID:

2-s2.0-85033476334

Part of ISSN: 20492618
Contributors: Emerson, J.B.; Adams, R.I.; Román, C.M.B.; Brooks, B.; Coil, D.A.; Dahlhausen, K.; Ganz, H.H.; Hartmann, E.M.; Hsu, T.; Justice, N.B. et al.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2concentrations

Environmental Microbiology
2016-07-07 | Journal article
Part of ISSN: 1462-2912
Contributors: Alexander J. Probst; Cindy J. Castelle; Andrea Singh; Christopher T. Brown; Karthik Anantharaman; Itai Sharon; Laura A. Hug; David Burstein; Joanne B. Emerson; Brian C. Thomas et al.
Source: Self-asserted source
Joanne B Emerson via Crossref Metadata Search
grade
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De novo sequences of haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape

Archaea
2015 | Journal article
EID:

2-s2.0-84924359433

Part of ISSN: 14723646
Contributors: Tully, B.J.; Emerson, J.B.; Andrade, K.; Brocks, J.J.; Allen, E.E.; Banfield, J.F.; Heidelberg, K.B.
Source: Self-asserted source
Joanne B Emerson via Scopus - Elsevier
grade
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Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem

The ISME Journal
2015-04 | Journal article
Part of ISSN: 1751-7362
Contributors: Karen Andrade; Jörn Logemann; Karla B Heidelberg; Joanne B Emerson; Luis R Comolli; Laura A Hug; Alexander J Probst; Angus Keillar; Brian C Thomas; Christopher S Miller et al.
Source: Self-asserted source
Joanne B Emerson via Crossref Metadata Search
grade
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Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

Environmental Microbiology
2015-04-08 | Journal article
Part of ISSN: 1462-2912
Contributors: Joanne B. Emerson; Brian C. Thomas; Walter Alvarez; Jillian F. Banfield
Source: Self-asserted source
Joanne B Emerson via Crossref Metadata Search
grade
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Impacts of Flood Damage on Airborne Bacteria and Fungi in Homes after the 2013 Colorado Front Range Flood

Environmental Science & Technology
2015-02 | Journal article
Part of ISSN: 0013-936X
Contributors: Joanne B. Emerson; Patricia B. Keady; Tess E. Brewer; Nicholas Clements; Emily E. Morgan; Jonathan Awerbuch; Shelly L. Miller; Noah Fierer
Source: Self-asserted source
Joanne B Emerson via Crossref Metadata Search
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Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

Nature Communications
2014-11 | Journal article
Part of ISSN: 2041-1723
Contributors: Alexander J. Probst; Thomas Weinmaier; Kasie Raymann; Alexandra Perras; Joanne B. Emerson; Thomas Rattei; Gerhard Wanner; Andreas Klingl; Ivan A. Berg; Marcos Yoshinaga et al.
Source: Self-asserted source
Joanne B Emerson via Crossref Metadata Search
grade
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Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.

2014-05 | Journal article
DOI:

10.1038/ismej.2013.221

PMID:

24335829

Contributors: Podell S; Emerson JB; Jones CM; Ugalde JA; Welch S; Heidelberg KB; Banfield JF; Allen EE
Source: Self-asserted source
Joanne B Emerson via Europe PubMed Central
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Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia.

2013 | Journal article
DOI:

10.3389/fmicb.2013.00115

PMID:

23717306

PMC:

PMC3651956

Contributors: Heidelberg KB; Nelson WC; Holm JB; Eisenkolb N; Andrade K; Emerson JB
Source: Self-asserted source
Joanne B Emerson via Europe PubMed Central
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Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains.

2013 | Journal article
DOI:

10.1186/1471-2180-13-259

PMID:

24238386

PMC:

PMC3840555

Contributors: Doll HM; Armitage DW; Daly RA; Emerson JB; Goltsman DS; Yelton AP; Kerekes J; Firestone MK; Potts MD
Source: Self-asserted source
Joanne B Emerson via Europe PubMed Central
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