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Works (39)

Multiancestry genomic and transcriptomic analysis of gastric cancer

Nature Genetics
2023-04 | Journal article
Contributors: Yasushi Totoki; Mihoko Saito-Adachi; Yuichi Shiraishi; Daisuke Komura; Hiromi Nakamura; Akihiro Suzuki; Kenji Tatsuno; Hirofumi Rokutan; Natsuko Hama; Shogo Yamamoto et al.
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Crossref

Nucleic acid–triggered tumoral immunity propagates pH‐selective therapeutic antibodies through tumor‐driven epitope spreading

Cancer Science
2023-01 | Journal article
Contributors: Genta Furuya; Hiroto Katoh; Shinichiro Atsumi; Itaru Hashimoto; Daisuke Komura; Ryo Hatanaka; Shogo Senga; Shuto Hayashi; Shoji Akita; Hirofumi Matsumura et al.
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Crossref

Functional genomics screening identifies aspartyl‐tRNA synthetase as a novel prognostic marker and a therapeutic target for gastric cancers

The Journal of Pathology
2022-10 | Journal article
Contributors: Bin Liu; Hiroto Katoh; Daisuke Komura; Asami Yamamoto; Mieko Ochi; Takumi Onoyama; Hiroyuki Abe; Tetsuo Ushiku; Yasuyuki Seto; Jian Suo et al.
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Crossref

Beyond pathologist-level annotation of large-scale cancer histology for semantic segmentation using immunofluorescence restaining

2022-05-10 | Preprint
Contributors: Daisuke Komura; Takumi Onoyama; Koki Shinbo; Hiroto Odaka; Minako Hayakawa; Mieko Ochi; Ranny Herdiantoputri; Kei Sakamoto; Hiroto Katoh; Tohru Ikeda et al.
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Crossref

Viola: a structural variant signature extractor with user-defined classifications

Bioinformatics
2022-01-03 | Journal article
Contributors: Itsuki Sugita; Shohei Matsuyama; Hiroki Dobashi; Daisuke Komura; Shumpei Ishikawa; Peter Robinson
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Crossref

Viola: a structural variant signature extractor with user-defined classifications

2021-04-01 | Preprint
Contributors: Itsuki Sugita; Shohei Matsuyama; Hiroki Dobashi; Daisuke Komura; Shumpei Ishikawa
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Crossref

Clinicopathological significance of microRNA-21 in extracellular vesicles of pleural lavage fluid of lung adenocarcinoma and its functions inducing the mesothelial to mesenchymal transition

Cancer Medicine
2020 | Journal article
EID:

2-s2.0-85083621666

Part of ISBN:

20457634

Contributors: Watabe, S.; Kikuchi, Y.; Morita, S.; Komura, D.; Numakura, S.; Kumagai-Togashi, A.; Watanabe, M.; Matsutani, N.; Kawamura, M.; Yasuda, M. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

High expression of olfactomedin-4 is correlated with chemoresistance and poor prognosis in pancreatic cancer

PLoS ONE
2020 | Journal article
EID:

2-s2.0-85077765354

Part of ISBN:

19326203

Contributors: Ohkuma, R.; Yada, E.; Ishikawa, S.; Komura, D.; Ishizaki, H.; Tamada, K.; Kubota, Y.; Hamada, K.; Ishida, H.; Hirasawa, Y. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Novel targets identified by integrated cancer-stromal interactome analysis of pancreatic adenocarcinoma

Cancer Letters
2020 | Journal article
EID:

2-s2.0-85075478300

Part of ISBN:

18727980 03043835

Contributors: Hiroshima, Y.; Kasajima, R.; Kimura, Y.; Komura, D.; Ishikawa, S.; Ichikawa, Y.; Bouvet, M.; Yamamoto, N.; Oshima, T.; Morinaga, S. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Pan-cancer analysis of whole genomes

Nature
2020 | Journal article
EID:

2-s2.0-85079038817

Part of ISBN:

14764687 00280836

Contributors: Campbell, P.J.; Getz, G.; Korbel, J.O.; Stuart, J.M.; Jennings, J.L.; Stein, L.D.; Perry, M.D.; Nahal-Bose, H.K.; Ouellette, B.F.F.; Li, C.H. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

The first case of gastric carcinoma with NTRK rearrangement: identification of a novel ATP1B–NTRK1 fusion

Gastric Cancer
2020 | Journal article
EID:

2-s2.0-85082014039

Part of ISBN:

14363305 14363291

Contributors: Shinozaki-Ushiku, A.; Ishikawa, S.; Komura, D.; Seto, Y.; Aburatani, H.; Ushiku, T.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Focal adhesion ribonucleoprotein complex proteins are major humoral cancer antigens and targets in autoimmune diseases

Communications Biology
2020-10-16 | Journal article
Contributors: Shinichiro Atsumi; Hiroto Katoh; Daisuke Komura; Itaru Hashimoto; Genta Furuya; Hirotomo Koda; Hiroki Konishi; Ryohei Suzuki; Asami Yamamoto; Satsuki Yuba et al.
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Crossref

Defined lifestyle and germline factors predispose Asian populations to gastric cancer.

Science advances
2020-05-06 | Journal article
Source: Self-asserted source
Daisuke Komura

Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning

BMC Bioinformatics
2019 | Journal article
EID:

2-s2.0-85066331929

Part of ISBN:

14712105

Contributors: Konishi, H.; Komura, D.; Katoh, H.; Atsumi, S.; Koda, H.; Yamamoto, A.; Seto, Y.; Fukayama, M.; Yamaguchi, R.; Imoto, S. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

From Detection of Individual Metastases to Classification of Lymph Node Status at the Patient Level: The CAMELYON17 Challenge

IEEE Transactions on Medical Imaging
2019 | Journal article
EID:

2-s2.0-85052677567

Part of ISBN:

1558254X 02780062

Contributors: Bándi, P.; Geessink, O.; Manson, Q.; Van Dijk, M.; Balkenhol, M.; Hermsen, M.; Ehteshami Bejnordi, B.; Lee, B.; Paeng, K.; Zhong, A. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

In vivo effects of mutant RHOA on tumor formation in an orthotopic inoculation model

Oncology Reports
2019 | Journal article
EID:

2-s2.0-85072625399

Part of ISBN:

17912431 1021335X

Contributors: Nishizawa, T.; Fujii, E.; Komura, D.; Kuroiwa, Y.; Ishimaru, C.; Monnai, M.; Aburatani, H.; Ishikawa, S.; Suzuki, M.; Nakano, K.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Interleukin-13 receptor α2 is a novel marker and potential therapeutic target for human melanoma

Scientific Reports
2019 | Journal article
EID:

2-s2.0-85061034112

Part of ISBN:

20452322

Contributors: Okamoto, H.; Yoshimatsu, Y.; Tomizawa, T.; Kunita, A.; Takayama, R.; Morikawa, T.; Komura, D.; Takahashi, K.; Oshima, T.; Sato, M. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Machine learning approaches for pathologic diagnosis

Virchows Archiv
2019 | Journal article
EID:

2-s2.0-85068103749

Part of ISBN:

14322307 09456317

Contributors: Komura, D.; Ishikawa, S.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

A benchmark for comparing precision medicine methods in thyroid cancer diagnosis using tissue microarrays

Bioinformatics
2018 | Journal article
EID:

2-s2.0-85047078176

Part of ISBN:

14602059 13674803

Contributors: Wang, C.-W.; Lee, Y.-C.; Calista, E.; Zhou, F.; Zhu, H.; Suzuki, R.; Komura, D.; Ishikawa, S.; Cheng, S.-P.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Difference in morphology and interactome profiles between orthotopic and subcutaneous gastric cancer xenograft models

Journal of Toxicologic Pathology
2018 | Journal article
EID:

2-s2.0-85055177246

Part of ISBN:

09149198

Contributors: Nakano, K.; Nishizawa, T.; Komura, D.; Fujii, E.; Monnai, M.; Kato, A.; Funahashi, S.-I.; Ishikawa, S.; Suzuki, M.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

HER2 heterogeneity is associated with poor survival in HER2-positive breast cancer

International Journal of Molecular Sciences
2018 | Journal article
EID:

2-s2.0-85051995550

Part of ISBN:

14220067 16616596

Contributors: Hosonaga, M.; Arima, Y.; Sampetrean, O.; Komura, D.; Koya, I.; Sasaki, T.; Sato, E.; Okano, H.; Kudoh, J.; Ishikawa, S. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Machine Learning Methods for Histopathological Image Analysis

Computational and Structural Biotechnology Journal
2018 | Journal article
Contributors: Daisuke Komura; Shumpei Ishikawa
Source: check_circle
Crossref
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Preferred source (of 2)‎

Luigi: Large-scale histopathological image retrieval system using deep texture representations

2018-06-22 | Other
Contributors: Daisuke Komura; Keisuke Fukuta; Ken Tominaga; Akihiro Kawabe; Hirotomo Koda; Ryohei Suzuki; Hiroki Konishi; Toshikazu Umezaki; Tatsuya Harada; Shumpei Ishikawa
Source: check_circle
Crossref

A Benchmark for Comparing Precision Medicine Methods in Thyroid Cancer Diagnosis using Tissue Microarrays

Bioinformatics
2017 | Journal article
Source: Self-asserted source
Daisuke Komura

Immunogenetic Profiling for Gastric Cancers Identifies Sulfated Glycosaminoglycans as Major and Functional B Cell Antigens in Human Malignancies.

Cell reports
2017-08 | Journal article
Source: Self-asserted source
Daisuke Komura via Europe PubMed Central
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Preferred source (of 2)‎

CASTIN: A system for comprehensive analysis of cancer-stromal interactome

BMC Genomics
2016 | Journal article
EID:

2-s2.0-84994905050

Contributors: Komura, D.; Isagawa, T.; Kishi, K.; Suzuki, R.; Sato, R.; Tanaka, M.; Katoh, H.; Yamamoto, S.; Tatsuno, K.; Fukayama, M. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Loss of YAP1 defines neuroendocrine differentiation of lung tumors

Cancer Science
2016 | Journal article
EID:

2-s2.0-84988025833

Contributors: Ito, T.; Matsubara, D.; Tanaka, I.; Makiya, K.; Tanei, Z.-I.; Kumagai, Y.; Shiu, S.-J.; Nakaoka, H.J.; Ishikawa, S.; Isagawa, T. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Periostin, a Niche Component, Is Produced by Cancer-Associated Fibroblasts, Supporting Growth of Gastric Cancer through ERK Activation.

2014-01 | Journal article
Contributors: Kikuchi Y; Kunita A; Iwata C; Komura D; Nishiyama T; Shimazu K; Takeshita K; Shibahara J; Kii I; Morishita Y et al.
Source: Self-asserted source
Daisuke Komura via Europe PubMed Central
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Preferred source (of 2)‎

Transplantation of alveolar type II cells stimulates lung regeneration during compensatory lung growth in adult rats

Journal of Thoracic and Cardiovascular Surgery
2012 | Journal article
EID:

2-s2.0-84857232427

Contributors: Wada, H.; Yoshida, S.; Suzuki, H.; Sakairi, Y.; Mizobuchi, T.; Komura, D.; Sato, Y.; Yokoi, S.; Yoshino, I.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Stable knockdown of S100A4 suppresses cell migration and metastasis of osteosarcoma

Tumor Biology
2011 | Journal article
EID:

2-s2.0-79960574049

Contributors: Fujiwara, M.; Kashima, T.G.; Kunita, A.; Kii, I.; Komura, D.; Grigoriadis, A.E.; Kudo, A.; Aburatani, H.; Fukayama, M.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

A wave of nascent transcription on activated human genes

Proceedings of the National Academy of Sciences of the United States of America
2009 | Journal article
EID:

2-s2.0-70849129503

Contributors: Wada, Y.; Ohta, Y.; Xu, M.; Tsutsumi, S.; Minami, T.; Inoue, K.; Komura, D.; Kitakami, J.; Oshida, N.; Papantonis, A. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Promoting total efficiency in text clustering via iterative and interactive metric learning

Proceedings - IEEE International Conference on Data Mining, ICDM
2009 | Conference paper
EID:

2-s2.0-77951202149

Contributors: Momma, M.; Morinaga, S.; Komura, D.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

High-density oligonucleotide array with sub-kilobase resolution reveals breakpoint information of submicroscopic deletions in nevoid basal cell carcinoma syndrome

Human Genetics
2007 | Journal article
EID:

2-s2.0-36348967090

Contributors: Fujii, K.; Ishikawa, S.; Uchikawa, H.; Komura, D.; Shapero, M.H.; Shen, F.; Hung, J.; Arai, H.; Tanaka, Y.; Sasaki, K. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays

Genome Research
2006 | Journal article
EID:

2-s2.0-33751345434

Contributors: Komura, D.; Shen, F.; Ishikawa, S.; Fitch, K.R.; Chen, W.; Zhang, J.; Liu, G.; Ihara, S.; Nakamura, H.; Hurles, M.E. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Global variation in copy number in the human genome

Nature
2006 | Journal article
EID:

2-s2.0-33751329250

Contributors: Redon, R.; Ishikawa, S.; Fitch, K.R.; Feuk, L.; Perry, G.H.; Andrews, T.D.; Fiegler, H.; Shapero, M.H.; Carson, A.R.; Chen, W. et al.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Noise reduction from genotyping microarrays using probe level information

In Silico Biology
2006 | Journal article
EID:

2-s2.0-33745209451

Contributors: Komura, D.; Nishimura, K.; Ishikawa, S.; Panda, B.; Huang, J.; Nakamura, H.; Ihara, S.; Hirose, M.; Jones, K.W.; Aburatani, H.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Allelic dosage analysis with genotyping microarrays

Biochemical and Biophysical Research Communications
2005 | Journal article
EID:

2-s2.0-21344449498

Contributors: Ishikawa, S.; Komura, D.; Tsuji, S.; Nishimura, K.; Yamamoto, S.; Panda, B.; Huang, J.; Fukayama, M.; Jones, K.W.; Aburatani, H.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Multidimensional support vector machines for visualization of gene expression data

Bioinformatics
2005 | Journal article
EID:

2-s2.0-14644441659

Contributors: Komura, D.; Nakamura, H.; Tsutsumi, S.; Aburatani, H.; Ihara, S.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier

Multidimensional support vector machines for visualization of gene expression data

Proceedings of the ACM Symposium on Applied Computing
2004 | Conference paper
EID:

2-s2.0-2442451616

Contributors: Komura, D.; Nakamura, H.; Tsutsumi, S.; Aburatani, H.; Ihara, S.
Source: Self-asserted source
Daisuke Komura via Scopus - Elsevier