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Employment (2)

Max Planck Institute for Plant Breeding Research: Köln, DE

2023-06-12 to present (Department of Chromosome Biology)
Employment
Source: Self-asserted source
Matthew Parker

University of Dundee: Dundee, Dundee, GB

2018-10-01 to 2023-05-04 | Postdoctoral Researcher (School of Life Sciences)
Employment
Source: Self-asserted source
Matthew Parker

Education and qualifications (1)

University of Sheffield: Sheffield, South Yorkshire, GB

2014-10-01 to 2018-10-01 | PhD Student (Molecular Biology and Biotechnology)
Qualification
Source: Self-asserted source
Matthew Parker

Works (15)

Disruption of the mRNA m6A writer complex triggers autoimmunity in Arabidopsis

2025-02-23 | Preprint
DOI: 10.1101/2025.02.18.638636
Contributors: Carey L Metheringham; Anjil K Srivastava; Peter Thorpe; Ankita Maji; Matthew T Parker; Geoffrey J Barton; Gordon G Simpson
Source: check_circle
Crossref

RNA splicing: a split consensus reveals two major 5′ splice site classes

Open Biology
2025-01 | Journal article
DOI: 10.1098/rsob.240293
Contributors: Matthew T. Parker; Sebastian M. Fica; Gordon G. Simpson
Source: check_circle
Crossref

Expression quantitative trait locus mapping in recombinant gametes using single nucleus RNA sequencing

2024-08-06 | Preprint
DOI: 10.1101/2024.08.02.606310
Contributors: Matthew T. Parker; Samija Amar; José A. Campoy; Kristin Krause; Sergio Tusso; Magdalena Marek; Bruno Huettel; Korbinian Schneeberger
Source: check_circle
Crossref

Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K

eLife
2023-10-03 | Journal article
DOI: 10.7554/eLife.91997
Contributors: Matthew T Parker; Sebastian M Fica; Geoffrey J Barton; Gordon G Simpson
Source: check_circle
Crossref

The evolution of splice site sequence preference is linked to the U6 snRNA m6A methyltransferase METTL16

2023-05-05 | Preprint
DOI: 10.1101/2023.05.04.539401
Contributors: Matthew T Parker; Sebastian M Fica; Geoffrey J Barton; Gordon G Simpson
Source: check_circle
Crossref

m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5’ splice site

eLife
2022-11-21 | Journal article
DOI: 10.7554/eLife.78808
Contributors: Matthew T Parker; Beth K Soanes; Jelena Kusakina; Antoine Larrieu; Katarzyna Knop; Nisha Joy; Friedrich Breidenbach; Anna V Sherwood; Geoffrey J Barton; Sebastian M Fica et al.
Source: check_circle
Crossref

m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5’ splice site

2022-04-05 | Preprint
DOI: 10.1101/2022.04.05.487178
Contributors: Matthew T Parker; Beth K Soanes; Jelena Kusakina; Antoine Larrieu; Katarzyna Knop; Nisha Joy; Friedrich Breidenbach; Anna V Sherwood; Geoffrey J Barton; Sebastian M Fica et al.
Source: check_circle
Crossref

Yanocomp: robust prediction of m6A modifications in individual nanopore direct RNA reads

2021-06-16 | Other
DOI: 10.1101/2021.06.15.448494
Contributors: Matthew T. Parker; Geoffrey J. Barton; Gordon G. Simpson
Source: check_circle
Crossref

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

eLife
2021-04-27 | Journal article
DOI: 10.7554/eLife.65537
Contributors: Matthew T Parker; Katarzyna Knop; Vasiliki Zacharaki; Anna V Sherwood; Daniel Tomé; Xuhong Yu; Pascal GP Martin; Jim Beynon; Scott D Michaels; Geoffrey J Barton et al.
Source: check_circle
Crossref

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

2021-04-15 | Preprint
DOI: 10.1101/2021.04.14.439117
Contributors: Jessen V. Bredeson; Jessica B. Lyons; Ibukun O. Oniyinde; Nneka R. Okereke; Olufisayo Kolade; Ikenna Nnabue; Christian O. Nwadili; Eva Hřibová; Matthew Parker; Jeremiah Nwogha et al.
Source: check_circle
Crossref

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing.

Genome biology
2021-03 | Journal article
DOI: 10.1186/s13059-021-02296-0
PMID: 33648554
PMC: PMC7919322
Contributors: Parker MT; Knop K; Barton GJ; Simpson GG
Source: Self-asserted source
Matthew Parker via Europe PubMed Central

Making a mark: the role of RNA modifications in plant biology

The Biochemist
2020-08-17 | Journal article
DOI: 10.1042/bio20200046
Part of ISSN: 0954-982X
Part of ISSN: 1740-1194
Source: Self-asserted source
Matthew Parker

Two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

2020-05-30 | Preprint
DOI: 10.1101/2020.05.27.118679
Contributors: Matthew T. Parker; Katarzyna Knop; Geoffrey J. Barton; Gordon G. Simpson
Source: check_circle
Crossref

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification

eLife
2020-01-14 | Journal article
DOI: 10.7554/eLife.49658
Contributors: Matthew T Parker; Katarzyna Knop; Anna V Sherwood; Nicholas J Schurch; Katarzyna Mackinnon; Peter D Gould; Anthony JW Hall; Geoffrey J Barton; Gordon G Simpson
Source: check_circle
Crossref

The m6A-methylase complex recruits TREX and regulates mRNA export

Scientific Reports
2018-12 | Journal article
DOI: 10.1038/s41598-018-32310-8
Part of ISSN: 2045-2322
Source: Self-asserted source
Matthew Parker

Peer review (3 reviews for 3 publications/grants)

Review activity for Nature communications (1)
Review activity for Nature methods. (1)
Review activity for PLoS computational biology. (1)
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