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Employment (1)

University of Texas Health Science Center at San Antonio: San Antonio, TX, US

2017-11-01 to present | Assistant Professor (Population Health Sciences)
Employment
Source: Self-asserted source
Siyuan Zheng

Education and qualifications (5)

University of Texas MD Anderson Cancer Center: TX, TX, US

2015 to 2017 | Instructor (Genomic Medicine)
Qualification
Source: Self-asserted source
Siyuan Zheng

University of Texas MD Anderson Cancer Center: TX, TX, US

2011 to 2014 | Postdoctoral Fellow (Bioinformatics)
Qualification
Source: Self-asserted source
Siyuan Zheng

Vanderbilt University Medical Center: Nashville, TN, US

2009 to 2011 | Postdoctoral Fellow (Biomedical Informatics)
Qualification
Source: Self-asserted source
Siyuan Zheng

Shanghai Institutes for Biological Sciences: Shanghai, Shanghai, CN

2004-09-01 to 2009-07-31 | PhD
Education
Source: Self-asserted source
Siyuan Zheng

Nanjing University: Nanjing, Jiangsu, CN

2000 to 2004 | B.S. (Biochemistry)
Education
Source: Self-asserted source
Siyuan Zheng

Professional activities (3)

American Association for Cancer Research: Philadelphia, PA, US

Full Member
Membership
Source: Self-asserted source
Siyuan Zheng

The University of Texas System: Austin, Texas, US

2019 | UT Rising Stars
Distinction
Source: Self-asserted source
Siyuan Zheng

Cancer Prevention and Research Institute of Texas: Austin, Texas, US

2017 | CPRIT Scholar
Distinction
Source: Self-asserted source
Siyuan Zheng

Works (50 of 77)

Items per page:
Page 1 of 2

Data from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Data from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Figures S1-S4 from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Figures S1-S4 from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Table S1 from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Table S1 from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Table S2 from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Table S2 from Prospective Clinical Sequencing of Adult Glioma

2023-04-03 | Preprint
Contributors: Siyuan Zheng; Kristin Alfaro-Munoz; Wei Wei; Xiaojing Wang; Fang Wang; Agda Karina Eterovic; Kenna R. Mills Shaw; Funda Meric-Bernstam; Gregory N. Fuller; Ken Chen et al.
Source: check_circle
Crossref

Data from <i>EGFR</i> Amplification Induces Increased DNA Damage Response and Renders Selective Sensitivity to Talazoparib (PARP Inhibitor) in Glioblastoma

2023-03-31 | Preprint
Contributors: Shaofang Wu; Feng Gao; Siyuan Zheng; Chen Zhang; Emmanuel Martinez-Ledesma; Ravesanker Ezhilarasan; Jie Ding; Xiaolong Li; Ningping Feng; Asha Multani et al.
Source: check_circle
Crossref

Data from <i>EGFR</i> Amplification Induces Increased DNA Damage Response and Renders Selective Sensitivity to Talazoparib (PARP Inhibitor) in Glioblastoma

2023-03-31 | Preprint
Contributors: Shaofang Wu; Feng Gao; Siyuan Zheng; Chen Zhang; Emmanuel Martinez-Ledesma; Ravesanker Ezhilarasan; Jie Ding; Xiaolong Li; Ningping Feng; Asha Multani et al.
Source: check_circle
Crossref

Data from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Data from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Data from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Data from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Supplementary Data Figure S1 to S6, and Table S3 and S4. from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Supplementary Data Figure S1 to S6, and Table S3 and S4. from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Supplementary Data from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Supplementary Data from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Supplementary Figure from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Supplementary Figure from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Supplementary Figure from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Supplementary Figure from M<sup>6</sup>A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

2023-03-31 | Preprint
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Supplementary Figures and legends from <i>EGFR</i> Amplification Induces Increased DNA Damage Response and Renders Selective Sensitivity to Talazoparib (PARP Inhibitor) in Glioblastoma

2023-03-31 | Preprint
Contributors: Shaofang Wu; Feng Gao; Siyuan Zheng; Chen Zhang; Emmanuel Martinez-Ledesma; Ravesanker Ezhilarasan; Jie Ding; Xiaolong Li; Ningping Feng; Asha Multani et al.
Source: check_circle
Crossref

Supplementary Figures and legends from <i>EGFR</i> Amplification Induces Increased DNA Damage Response and Renders Selective Sensitivity to Talazoparib (PARP Inhibitor) in Glioblastoma

2023-03-31 | Preprint
Contributors: Shaofang Wu; Feng Gao; Siyuan Zheng; Chen Zhang; Emmanuel Martinez-Ledesma; Ravesanker Ezhilarasan; Jie Ding; Xiaolong Li; Ningping Feng; Asha Multani et al.
Source: check_circle
Crossref

Supplementary Materials and Methods from <i>EGFR</i> Amplification Induces Increased DNA Damage Response and Renders Selective Sensitivity to Talazoparib (PARP Inhibitor) in Glioblastoma

2023-03-31 | Preprint
Contributors: Shaofang Wu; Feng Gao; Siyuan Zheng; Chen Zhang; Emmanuel Martinez-Ledesma; Ravesanker Ezhilarasan; Jie Ding; Xiaolong Li; Ningping Feng; Asha Multani et al.
Source: check_circle
Crossref

Supplementary Materials and Methods from <i>EGFR</i> Amplification Induces Increased DNA Damage Response and Renders Selective Sensitivity to Talazoparib (PARP Inhibitor) in Glioblastoma

2023-03-31 | Preprint
Contributors: Shaofang Wu; Feng Gao; Siyuan Zheng; Chen Zhang; Emmanuel Martinez-Ledesma; Ravesanker Ezhilarasan; Jie Ding; Xiaolong Li; Ningping Feng; Asha Multani et al.
Source: check_circle
Crossref

Table S1 from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Table S1 from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Table S2 from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Table S2 from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Table S5 from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Table S5 from Tie2–FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma

2023-03-31 | Preprint
Contributors: Xiaolong Li; Emmanuel Martinez-Ledesma; Chen Zhang; Feng Gao; Siyuan Zheng; Jie Ding; Shaofang Wu; Nghi Nguyen; Stephan C. Clifford; Patrick Y. Wen et al.
Source: check_circle
Crossref

Protocol to benchmark gene expression signature scoring techniques for single-cell RNA sequencing data in cancer

STAR Protocols
2022-12 | Journal article
Contributors: Nighat Noureen; Xiaojing Wang; Siyuan Zheng
Source: check_circle
Crossref

Inhibition of LIFR Blocks Adiposity-Driven Endometrioid Endometrial Cancer Growth

Cancers
2022-11 | Journal article | Author
Contributors: Logan Blankenship; Uday P. Pratap; Xue Yang; Zexuan Liu; Kristin Ann Altwegg; Bindu Santhamma; Kumaraguruparan Ramasamy; Swapna Konda; Yidong Chen; Zhao Lai et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute

Genomic disparities between cancers in adolescent and young adults and in older adults

Nature Communications
2022-11-24 | Journal article
Contributors: Xiaojing Wang; Anne-Marie Langevin; Peter J. Houghton; Siyuan Zheng
Source: check_circle
Crossref

M6A RNA Methylation Regulates Histone Ubiquitination to Support Cancer Growth and Progression

Cancer Research
2022-05-16 | Journal article
Contributors: Pooja Yadav; Panneerdoss Subbarayalu; Daisy Medina; Saif Nirzhor; Santosh Timilsina; Subapriya Rajamanickam; Vijay K. Eedunuri; Yogesh Gupta; Siyuan Zheng; Nourhan Abdelfattah et al.
Source: check_circle
Crossref

Signature-scoring methods developed for bulk samples are not adequate for cancer single-cell RNA sequencing data

eLife
2022-02-25 | Journal article
Contributors: Nighat Noureen; Zhenqing Ye; Yidong Chen; Xiaojing Wang; Siyuan Zheng
Source: check_circle
Crossref

Benchmarking supervised signature-scoring methods for single-cell RNA sequencing data in cancer

2021-07-01 | Other
Contributors: Nighat Noureen; Zhenqing Ye; Yidong Chen; Xiaojing Wang; Siyuan Zheng
Source: check_circle
Crossref

A modular master regulator landscape controls cancer transcriptional identity

Cell
2021-01 | Journal article
Contributors: Evan O. Paull; Alvaro Aytes; Sunny J. Jones; Prem S. Subramaniam; Federico M. Giorgi; Eugene F. Douglass; Somnath Tagore; Brennan Chu; Alessandro Vasciaveo; Siyuan Zheng et al.
Source: check_circle
Crossref

Integrated analysis of telomerase enzymatic activity unravels an association with cancer stemness and proliferation.

Nature communications
2021-01-08 | Journal article
Source: Self-asserted source
Siyuan Zheng
grade
Preferred source (of 2)‎

PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models.

Nucleic acids research
2020-08-18 | Journal article
Source: Self-asserted source
Siyuan Zheng

Murine models of IDH-wild-type glioblastoma exhibit spatial segregation of tumor initiation and manifestation during evolution.

Nature communications
2020-07-22 | Journal article
Source: Self-asserted source
Siyuan Zheng

PCAT: An integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models

2020-06-23 | Preprint
Contributors: Juechen Yang; Qilin Li; Nighat Noureen; Yanbing Fang; Raushan Kurmasheva; Peter Houghton; Xiaojing Wang; Siyuan Zheng
Source: check_circle
Crossref

Inferring Telomerase Enzymatic Activity from Expression Data

2020-05-26 | Preprint
Contributors: Nighat Noureen; Shaofang Wu; Yingli Lyu; Juechen Yang; WK Alfred Yung; Jonathan Gelfond; Xiaojing Wang; Dimpy Koul; Andrew Ludlow; Siyuan Zheng
Source: check_circle
Crossref

EGFR Amplification Induces Increased DNA Damage Response and Renders Selective Sensitivity to Talazoparib (PARP Inhibitor) in Glioblastoma.

Clinical cancer research : an official journal of the American Association for Cancer Research
2019-12-18 | Journal article
Source: Self-asserted source
Siyuan Zheng
grade
Preferred source (of 2)‎

A Modular Master Regulator Landscape Determines the Impact of Genetic Alterations on the Transcriptional Identity of Cancer Cells

2019-09-05 | Other
Contributors: Evan O. Paull; Alvaro Aytes; Prem Subramaniam; Federico M. Giorgi; Eugene F. Douglass; Brennan Chu; Sunny J. Jones; Siyuan Zheng; Roel Verhaak; Cory Abate-Shen et al.
Source: check_circle
Crossref

Tie2-FGFR1 Interaction Induces Adaptive PI3K Inhibitor Resistance by Upregulating Aurora A/PLK1/CDK1 Signaling in Glioblastoma.

Cancer research
2019-08-15 | Journal article
Source: Self-asserted source
Siyuan Zheng
grade
Preferred source (of 2)‎

Prospective Clinical Sequencing of Adult Glioma.

Molecular cancer therapeutics
2019-03-29 | Journal article
Source: Self-asserted source
Siyuan Zheng
grade
Preferred source (of 2)‎

Opposing Tumor-Promoting and -Suppressive Functions of Rictor/mTORC2 Signaling in Adult Glioma and Pediatric SHH Medulloblastoma.

Cell reports
2018-07-01 | Journal article
Source: Self-asserted source
Siyuan Zheng

TumorFusions: an integrative resource for cancer-associated transcript fusions.

Nucleic acids research
2018-01-01 | Journal article
Source: Self-asserted source
Siyuan Zheng
grade
Preferred source (of 2)‎
Items per page:
Page 1 of 2

Peer review (22 reviews for 13 publications/grants)

Review activity for Advanced science. (2)
Review activity for Communications biology. (3)
Review activity for Genome medicine. (3)
Review activity for Genomics, Proteomics & Bioinformatics. (3)
Review activity for iScience. (2)
Review activity for Journal of hematology & oncology. (2)
Review activity for Nature cancer. (1)
Review activity for Nature communications (1)
Review activity for npj precision oncology. (1)
Review activity for Oncogene. (1)
Review activity for PLOS genetics. (1)
Review activity for Small methods (1)
Review activity for Trends in cancer. (1)