Personal information

Complex Biological Network, Bioinformatics, System Biology
United States

Activities

Employment (2)

La Jolla Institute For Allergy & Immunology: San Diego, California, US

2020-02-01 to present | Postdoctoral Fellow (VD-Peters)
Employment
Source: Self-asserted source
Pramod Shinde

Guru Nanak Khalsa College: Mumbai, Maharashtra, IN

2013-07-01 to 2014-09-31 | Asst. Professor (Bioinformatics)
Employment
Source: Self-asserted source
Pramod Shinde

Education and qualifications (3)

Indian Institute of Technology Indore: Indore, IN

2014-10-01 to 2021-01 | PhD (Biosciences and Bioengeeniring)
Education
Source: Self-asserted source
Pramod Shinde

University of Mumbai: Mumbai, MH, IN

2011-07-01 to 2013-06-01 | M.Sc (Bioinformatics)
Education
Source: Self-asserted source
Pramod Shinde

University of Mumbai: Mumbai, Maharashtra, IN

2008 to 2011 | B.Sc Microbiology (Microbiology)
Qualification
Source: Self-asserted source
Pramod Shinde

Funding (2)

Codon based co-occurrence network motifs in human mitochondria

2015-01 to 2020-12 | Award
Department of Science and Technology, Ministry of Science and Technology, India (New Delhi, IN)
Source: Self-asserted source
Pramod Shinde

Codon based co-occurrence network motifs in human mitochondria

Grant
European Molecular Biology Organization (Heidelberg, DE)
Source: Self-asserted source
Pramod Shinde

Works (25)

Brain rewiring during developmental transitions: A Comparative Analysis of Larva and Adult <italic>Drosophila melanogaster</italic>

BioRxiv
2024 | Journal article
Contributors: Yadav, Prateek; Shinde, Pramod; Singh, Aradhana
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 2)‎

Integrated longitudinal multiomics study identifies immune programs associated with acute COVID-19 severity and mortality

Journal of Clinical Investigation
2024 | Journal article
Contributors: Gygi, Jeremy P.; Maguire, Cole; Patel, Ravi K.; Shinde, Pramod; Konstorum, Anna; Shannon, Casey P.; Xu, Leqi; Hoch, Annmarie; Jayavelu, Naresh Doni; Haddad, Elias K. et al.
Source: check_circle
Web of Science Researcher Profile Sync

Putting computational models of immunity to the test - an invited challenge to predictB. pertussisvaccination outcomes

2024-09-08 | Preprint
Contributors: Pramod Shinde; Lisa Willemsen; Michael Anderson; Minori Aoki; Saonli Basu; Julie G Burel; Peng Cheng; Souradipto Ghosh Dastidar; Aidan Dunleavy; Tal Einav et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Th1 polarization inBordetella pertussisvaccine responses is maintained through a positive feedback loop

2024-08-07 | Preprint
Contributors: Lisa Willemsen; Jiyeun Lee; Pramod Shinde; Ferran Soldevila; Minori Aoki; Shelby Orfield; Mari Kojima; Ricardo da Silva Antunes; Alessandro Sette; Bjoern Peters
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A multi-omics systems vaccinology resource to develop and test computational models of immunity

Cell Reports Methods
2024-03 | Journal article
Contributors: Pramod Shinde; Ferran Soldevila; Joaquin Reyna; Minori Aoki; Mikkel Rasmussen; Lisa Willemsen; Mari Kojima; Brendan Ha; Jason A. Greenbaum; James A. Overton et al.
Source: check_circle
Crossref

A systems vaccinology resource to develop and test computational models of immunity

BioRxiv
2023 | Journal article
Contributors: Shinde, Pramod; Soldevila, Ferran; Reyna, Joaquin; Aoki, Minori; Rasmussen, Mikkel; Willemsen, Lisa; Kojima, Mari; Ha, Brendan; Greenbaum, Jason A; Overton, James A et al.
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 2)‎

Integrated longitudinal multi-omics study identifies immune programs associated with COVID-19 severity and mortality in 1152 hospitalized participants

BioRxiv
2023 | Journal article
Contributors: Gygi, Jeremy P; Maguire, Cole; Patel, Ravi K.; Shinde, Pramod; Konstorum, Anna; Shannon, Casey P; Xu, Leqi; Hoch, Annmarie; Jayavelu, Naresh Doni; Haddad, Elias K et al.
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 2)‎

Higher-order co-mutation interactions in mitochondrial genomes

New Journal of Physics
2023-09-01 | Journal article
Contributors: Rahul K Verma; Pramod Shinde; Ankit Mishra; Sarika Jalan
Source: check_circle
Crossref

Higher-order co-mutation interactions in mitochondrial genomes

2023-02-13 | Preprint
Contributors: Rahul K Verma; Pramod Shinde; Ankit Mishra; Sarika Jalan
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Nucleotide-based genetic networks: Methods and applications

Journal of Biosciences
2022 | Journal article
Contributors: Verma, Rahul K.; Shinde, Pramod; Jalan, Sarika
Source: check_circle
Web of Science Researcher Profile Sync

Analysis of human mitochondrial genome co-occurrence networks of Asian population at varying altitudes

Scientific Reports
2021 | Journal article
Contributors: Verma, Rahul K.; Kalyakulina, Alena; Giuliani, Cristina; Shinde, Pramod; Kachhvah, Ajay Deep; Ivanchenko, Mikhail; Jalan, Sarika
Source: check_circle
Web of Science Researcher Profile Sync

Computational models of Immunity - Pertussis Boost (CMI-PB): Engaging the broader scientific community to develop predictive models of Tdap booster vaccination

The Journal of Immunology
2021 | Journal article
Contributors: Soldevila, Ferran C.; Shinde, Pramod; Kojima, Mari; Overton, James A.; Ha, Brendan; Greenbaum, Jason; Ay, Ferhat; Kleinstein, Steven H.; Grant, Barry J.; Peters, Bjoern
Source: check_circle
Web of Science Researcher Profile Sync

Impact of modular mitochondrial epistatic interactions on the evolution of human subpopulations

Mitochondrion
2021 | Journal article
Contributors: Shinde, Pramod; Whitwell, Harry J.; Verma, Rahul Kumar; Ivanchenko, Mikhail; Zaikin, Alexey; Jalan, Sarika
Source: check_circle
Web of Science Researcher Profile Sync

Symmetry in cancer networks identified: Proposal for multicancer biomarkers

Network Science
2019-12 | Journal article
Contributors: Pramod Shinde; Loïc Marrec; Aparna Rai; Alok Yadav; Rajesh Kumar; Mikhail Ivanchenko; Alexey Zaikin; Sarika Jalan
Source: check_circle
Crossref

Network spectra for drug-target identification in complex diseases: new guns against old foes

Applied Network Science
2018 | Journal article
Part of ISSN: 2364-8228
Contributors: Aparna Rai; Pramod Shinde; Sarika Jalan
Source: Self-asserted source
Pramod Shinde via Crossref Metadata Search

Impact of modular mitochondrial epistatic interactions on the evolution of human subpopulations

2018-12-26 | Other
Contributors: Pramod Shinde; Harry J. Whitwell; Rahul Kumar Verma; Mikhail Ivanchenko; Alexey Zaikin; Sarika Jalan
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Codon based co-occurrence network motifs in human mitochondria

Scientific Reports
2018-02 | Journal article
Part of ISSN: 2045-2322
Contributors: Pramod Shinde; Camellia Sarkar; Sarika Jalan
Source: Self-asserted source
Pramod Shinde via Crossref Metadata Search

Genetic Characterization of Influenza A (H1N1) Pandemic 2009 Virus Isolates from Mumbai

Current Microbiology
2017 | Journal article
Contributors: Gohil, Devanshi; Kothari, Sweta; Shinde, Pramod; Meharunkar, Rhuta; Warke, Rajas; Chowdhary, Abhay; Deshmukh, Ranjana
Source: check_circle
Web of Science Researcher Profile Sync

Assessment of Anti-Influenza Activity and Hemagglutination Inhibition of Plumbago indica and Allium sativum Extracts.

Pharmacognosy research
2016-04-01 | Journal article
Source: Self-asserted source
Pramod Shinde

A multilayer protein-protein interaction network analysis of different life stages in Caenorhabditis elegans

EPL (Europhysics Letters)
2015 | Journal article
Part of ISSN: 0295-5075
Contributors: Pramod Shinde; Sarika Jalan
Source: Self-asserted source
Pramod Shinde via Crossref Metadata Search

A NOVEL TETRAVALENT RECOMBINANT ENVELOPE DOMAIN III VACCINE AGAINST DENGUE: AN IN SILICO APPROACH

International Journal of Pharmaceutical Sciences and Research
2015 | Journal article
Contributors: Kulkarni, Ajit; Shinde, Pramod; Kothari, Sweta; Warke, Rajas; Chowdhary, Abhay; Deshmukh, Ranjana A.
Source: check_circle
Web of Science Researcher Profile Sync

Dissortativity and duplications in oral cancer

The European Physical Journal B
2015-08 | Journal article
Part of ISSN: 1434-6028
Contributors: Pramod Shinde; Alok Yadav; Aparna Rai; Sarika Jalan
Source: Self-asserted source
Pramod Shinde via Crossref Metadata Search

Drug susceptibility of influenza A/H3N2 strains co-circulating during 2009 influenza pandemic: First report from Mumbai

Infection, Genetics and Evolution
2015-01 | Journal article
Part of ISSN: 1567-1348
Contributors: Devanshi J. Gohil; Sweta T. Kothari; Pramod S. Shinde; Anand S. Chintakrindi; Rhuta Meharunkar; Rajas V. Warke; Meena A. Kanyalkar; Abhay S. Chowdhary; Ranjana A. Deshmukh
Source: Self-asserted source
Pramod Shinde via Crossref Metadata Search

IN SILICO DRUG DOCKING OF PHYTO INHIBITORS AGAINST TRIOSEPHOSPHATE ISOMERASE IN PLASMODIUM FALCIPARUM

International Journal of Pharmaceutical Sciences and Research
2013 | Journal article
Contributors: Shinde, Pramod; Savakare, Vijay S.; Sarang, Devangi; Patil, Komal
Source: check_circle
Web of Science Researcher Profile Sync

COMPARATIVE PERFORMANCE OF ACTIVITY OF ANTIMICROBIAL PRINCIPLES OF MANGROVES RHIZOPHORA SPECIES ALONG MUMBAI COAST

Indo-Global Research Journal of Pharmaceutical Sciences
2012 | Journal article
Source: Self-asserted source
Pramod Shinde

Peer review (36 reviews for 8 publications/grants)

Review activity for Biology. (6)
Review activity for Cells. (10)
Review activity for Gene. (2)
Review activity for Genes. (2)
Review activity for International journal of molecular sciences. (7)
Review activity for Journal of clinical medicine. (3)
Review activity for Journal of computational science. (4)
Review activity for Microorganisms. (2)