Personal information

Population genetics, conservation genetics, Neolithic transition

Activities

Employment (3)

Centre National de la Recherche Scientifique: Toulouse, FR

2012-10-01 to present | Directeur de Recherche
Employment
Source: Self-asserted source
Lounes Chikhi

Instituto Gulbenkian de Ciencia: Oeiras, PT

2005-09-01 to present | Principal Investigator (Population and Conservation Genetics)
Employment
Source: Self-asserted source
Lounes Chikhi

Centre National de la Recherche Scientifique: Toulouse, FR

2002-10-01 to 2012-09-30 | Chargé de Recherche
Employment
Source: Self-asserted source
Lounes Chikhi

Education and qualifications (8)

University College: London, GB

2001 to 2002 | PDRA
Education
Source: Self-asserted source
Lounes Chikhi

Queen Mary and Westfield College: London, GB

1999 to 2000 | PDRA
Education
Source: Self-asserted source
Lounes Chikhi

Institute of Zoology of the Zoological Society of London: London, London, GB

1997 to 1999 | PDRA
Education
Source: Self-asserted source
Lounes Chikhi

University of Padua: Padua, Veneto, IT

1996 to 1997 | Marie Curie Fellow
Education
Source: Self-asserted source
Lounes Chikhi

Université Pierre et Marie Curie: Paris, Île-de-France, FR

1991-10-01 to 1995-12-16 | PhD
Education
Source: Self-asserted source
Lounes Chikhi

Université Montpellier 2 Faculté des Sciences de Montpellier: Montpellier, FR

1991-10-01 to 1995-12-16 | PhD
Education
Source: Self-asserted source
Lounes Chikhi

AgroParisTech: Paris, FR

1988-09-01 to 1991-09-30 | Ingénieur
Education
Source: Self-asserted source
Lounes Chikhi

University of Tours: Tours, Centre-Val de Loire, FR

1990 to 1991 | DEA
Education
Source: Self-asserted source
Lounes Chikhi

Funding (6)

Demographic Inference in Structured Populations - DISPO

2018-10 to present | Grant
Fundação para a Ciência e a Tecnologia (Lisboa, PT)
Source: check_circle
CIÊNCIAVITAE

INFRAGECO (Inference, Fragmentation, Genomics and Conservation) - ERA-NET Biodiversa2005

2017-01 to 2020-05 | Grant
N/A (N/A, PT)
GRANT_NUMBER: 0000
Source: check_circle
CIÊNCIAVITAE

Perda e fragmentação de habitat ao longo do tempo e do espaço do ponto de vista de vertebrados em Madagáscar

2013-05 to 2016-02 | Grant
N/A (N/A, PT)
GRANT_NUMBER:

PTDC/BIA-BIC/4476/2012

Source: check_circle
CIÊNCIAVITAE

Efeitos genéticos da perda e fragmentação do habitat: análise comparativa de várias espécies de lémures em duas regiões adjacentes de Madgáscar.

2010-03 to 2013-05 | Grant
N/A (N/A, PT)
GRANT_NUMBER:

PTDC/BIA-BEC/100176/2008

Source: check_circle
CIÊNCIAVITAE

Respostas demográficas e genéticas à fragmentação e perda de habitat em dois grandes mamíferos florestais

2008-01 to 2011-12 | Grant
N/A (N/A, PT)
GRANT_NUMBER:

PTDC/BIA-BDE/71299/2006

Source: check_circle
CIÊNCIAVITAE

conservation, phylogéographie et génétique de lémuriens des habitats fragmentés de madagascar et de l'archiipel des comores

2008-01 to 2010-12 | Grant
Agence Française pour la Biodiversité (Brest, FR)
GRANT_NUMBER:

CD-AOOI07003

Source: check_circle
CIÊNCIAVITAE

Works (50 of 241)

Items per page:
Page 1 of 5

Species‐Specific Traits Shape Genetic Diversity During an Expansion–Contraction Cycle and Bias Demographic History Reconstruction

Molecular Ecology
2025-01 | Journal article
Contributors: Ravi Vishwakarma; Gabriele Maria Sgarlata; David Soriano‐Paños; Rita Rasteiro; Tiago Maié; Tiago Paixão; Rémi Tournebize; Lounès Chikhi
Source: check_circle
Crossref

Morphological variability or inter-observer bias? A methodological toolkit to improve data quality of multi-researcher datasets for the analysis of morphological variation

American Journal of Biological Anthropology
2024 | Journal article
Contributors: Schuessler, Dominik; Blanco, Marina B.; Guthrie, Nicola K.; Sgarlata, Gabriele M.; Dammhahn, Melanie; Ernest, Refaly; Evasoa, Mamy Rina; Hasiniaina, Alida; Hending, Daniel; Jan, Fabien et al.
Source: check_circle
Web of Science Researcher Profile Sync

Ignoring population structure in hominin evolutionary models can lead to the inference of spurious admixture events

Nature Ecology & Evolution
2024-12-13 | Journal article
Contributors: Rémi Tournebize; Lounès Chikhi
Source: check_circle
Crossref

Comparative population genomics of island birds reveal contrasting signals of ancient and recent population structure and panmixia

2024-11-11 | Preprint
Contributors: Marine HA-SHAN; Christophe Thébaud; Rémi Tournebize; Maëva Gabrielli; Armando Arredondo; Borja Mila; Lounès Chikhi
Source: check_circle
Crossref

Extending the IICR to complex non-stationary structured models

2024-10-25 | Preprint
Contributors: Alexane Jouniaux; Armando Arredondo; Simon Boitard; Lounès Chikhi; Olivier Mazet
Source: check_circle
Crossref

Extending the IICR to multiple genomes and identification of limitations of some demographic inferential methods

2024-08-19 | Preprint
Contributors: Lounès Chikhi; Willy Rodríguez; Cyriel Paris; Marine Ha-Shan; Alexane Jouniaux; Armando Arredondo; Camille Noûs; Simona Grusea; Josué Corujo; Inês Lourenço et al.
Source: check_circle
Crossref

On the demographic history of chimpanzees and some consequences of integrating population structure in chimpanzees and other great apes

2024-06-14 | Preprint
Contributors: Camille Steux; Clément Couloigner; Armando Arredondo; Willy Rodríguez; Olivier Mazet; Rémi Tournebize; Lounès Chikhi
Source: check_circle
Crossref

Life history traits influence the dynamics of genetic diversity in a refugium population undergoing expansion and contraction

2024-03-31 | Preprint
Contributors: Ravi Vishwakarma; Gabriele Maria Sgarlata; David Soriano-Panos; Rita Rasteiro; Tiago Maie; Tiago Paixao; Remi Tournebize; Lounes Chikhi
Source: check_circle
Crossref

African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

Nature Communications
2024-01-03 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3908869

WOSUID:

WOS:001136417200035

Contributors: Balboa, Renzo F.; Bertola, Laura D.; Brüniche-Olsen, A.; Rasmussen, Malthe Sebro; Liu, Xiaodong; Besnard, Guillaume; Salmona, Jordi; et al.
Source: check_circle
CIÊNCIAVITAE
grade
Preferred source (of 2)‎

Exact calculation of the expected SFS in structured populations

BioRxiv
2023 | Journal article
Contributors: Arredondo, Armando; Corujo, Josue; Nous, Camille; Boitard, Simon; Chikhi, Lounes; Mazet, Olivier
Source: check_circle
Web of Science Researcher Profile Sync

The genomic diversity of the Eliurus genus in northern Madagascar with a putative new species

Molecular Phylogenetics and Evolution
2023-12-20 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3906950

Contributors: Sgarlata, Gabriele Maria; Rasolondraibe, Emmanuel; Salmona, Jordi; Le Pors, Barbara; Ralantoharijaona, Tantely; Rakotonanahary, Ando; Jan, Fabien; et al.
Source: check_circle
CIÊNCIAVITAE

Effects of Forest Fragmentation on Connectivity and Genetic Diversity in an Endemic and an Invasive Rodent in Northwestern Madagascar

Genes
2023-07-15 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3909247

WOSUID:

WOS:001038500000001

Contributors: Ramsay, M.S.; Sgarlata, G.M.; Barratt, C.D.; Salmona, J.; Andriatsitohaina, B.; Kiene, F.; Manzi, S.; et al.
Source: check_circle
CIÊNCIAVITAE
grade
Preferred source (of 2)‎

Questioning Neanderthal admixture: on models, robustness and consensus in human evolution

2023-04-05 | Preprint
Contributors: Rémi Tournebize; Lounès Chikhi
Source: check_circle
Crossref
grade
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The importance of well protected forests for the conservation genetics of West African colobine monkeys

American Journal of Primatology
2023-01-02 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3909442

WOSUID:

WOS:000920533500001

Contributors: Minhós, T; Borges, F; Parreira, B; Oliveira, R; Aleixo-Pais, I; Calvignac, S; Leendertz, F; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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The Genomic Diversity of the Eliurus genus in northern Madagascar with a Putative New Species

BioRxiv
2022 | Journal article
Contributors: Sgarlata, Gabriele Maria; Rasolondraibe, Emmanuel; Salmona, Jordi; Le Pors, Barbara; Ralantoharijaona, Tantely; Rakotonanahary, Ando; Jan, Fabien; Manzi, Sophie; Iribar-Pelozuelo, Amaya; Zaonarivelo, John Rigobert et al.
Source: check_circle
Web of Science Researcher Profile Sync

The effect of habitat loss and fragmentation on isolation-by-distance and time

2022-10-27 | Preprint
Contributors: Gabriele Maria Sgarlata; Tiago Maié; Tiago de Zoeten; Rita Rasteiro; Lounès Chikhi
Source: check_circle
Crossref
grade
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On the genetic consequences of habitat contraction: edge effects and habitat loss

2022-10-26 | Preprint
Contributors: Gabriele Maria Sgarlata; Tiago Maié; Tiago de Zoeten; Rita Rasteiro; Lounès Chikhi
Source: check_circle
Crossref
grade
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Population genomic structure in Goodman's mouse lemur reveals long-standing separation of Madagascar's Central Highlands and eastern rainforests

Molecular Ecology
2022-07-26 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3909716

WOSUID:

WOS:000840675700001

Contributors: Tiley, G. P.; van Elst, T.; Teixeira, H.; Schüßler, D.; Salmona, J.; Blanco, M.B.; Ralison, J.M.; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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Correction: Inferring number of populations and changes in connectivity under the n-island model

Heredity
2022-05 | Journal article
Contributors: Armando Arredondo; Beatriz Mourato; Khoa Nguyen; Simon Boitard; Willy Rodríguez; Olivier Mazet; Lounès Chikhi
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Heterogeneity in effective size across the genome: effects on the inverse instantaneous coalescence rate (IICR) and implications for demographic inference under linked selection

Genetics
2022-03-03 | Journal article
Contributors: Simon Boitard; Armando Arredondo; Lounès Chikhi; Olivier Mazet; A Tellier
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure (vol 121, pg 663, 2018)

Heredity
2021 | Journal article
Contributors: Rodriguez, Willy; Mazet, Olivier; Grusea, Simona; Arredondo, Armando; Corujo, Josue M.; Boitard, Simon; Chikhi, Lounes
Source: check_circle
Web of Science Researcher Profile Sync

Impact of model assumptions on demographic inferences: the case study of two sympatric mouse lemurs in northwestern Madagascar

BMC Ecology and Evolution
2021-11-02 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3014325

WOSUID:

WOS:000714015900001

Contributors: Teixeira, Helena; Salmona, Jordi; Arredondo, Armando; Mourato, Beatriz; Manzi, Sophie; Rakotondravony, Romule; Mazet, Olivier; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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Luca Cavalli-Sforza, 100 years after his birth

Human Population Genetics and Genomics
2021-10-16 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3909995

Contributors: CHIKHI, Lounès ; Barbujani, Guido
Source: check_circle
CIÊNCIAVITAE

Past environmental changes affected lemur population dynamics prior to human impact in Madagascar

Communications Biology
2021-09-15 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3014321

WOSUID:

WOS:000696239600006

Contributors: Teixeira, Helena; Montade, Vincent; Salmona, Jordi; Metzger, Julia; Bremond, Laurent; Kasper, Thomas; Daut, Gerhard; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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Human origins in Southern African palaeo-wetlands? Strong claims from weak evidence

Journal of Archaeological Science
2021-06 | Journal article
SOURCE-WORK-ID:

cv-prod-id-3014242

WOSUID:

WOS:000651639700004

Contributors: Schlebusch, Carina M.; Loog, Liisa; Groucutt, Huw S.; King, Turi; Rutherford, Adam; Barbieri, Chiara; Barbujani, Guido; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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Inferring number of populations and changes in connectivity under the n-island model

Heredity
2021-06 | Journal article
Contributors: Armando Arredondo; Beatriz Mourato; Khoa Nguyen; Simon Boitard; Willy Rodríguez; Olivier Mazet; Lounès Chikhi
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Heterogeneity in effective size across the genome: effects on the Inverse Instantaneous Coalescence Rate (IICR) and implications for demographic inference under linked selection

2021-06-13 | Other
Contributors: Simon Boitard; Armando Arredondo; Camille Noûs; Lounès Chikhi; Olivier Mazet
Source: check_circle
Crossref
grade
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A reference‐free approach to analyse RADseq data using standard next generation sequencing toolkits

Molecular Ecology Resources
2021-05 | Journal article
Contributors: Rasmus Heller; Casia Nursyifa; Genís Garcia‐Erill; Jordi Salmona; Lounes Chikhi; Jonas Meisner; Thorfinn Sand Korneliussen; Anders Albrechtsen
Source: check_circle
Crossref
grade
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Cryptic patterns of speciation in cryptic primates: microendemic mouse lemurs and the multispecies coalescent

BioRxiv
2020 | Journal article
Contributors: Poelstra, J.; Salmona, J.; Tiley, G. P.; Schussler, D.; Blanco, M. B.; Andriambeloson, J. B.; Manzi, S.; Campbell, C. R.; Bouchez, O.; Etter, P. D. et al.
Source: check_circle
Web of Science Researcher Profile Sync

Hunting and its Recent Demographic Consequences in <i>Papio papio</i> in Guinea-Bissau Assessed Through Social and Molecular Data

Folia Primatologica
2020 | Journal article
Contributors: Ferreira da Silva, Maria Joana; Gerini, Federica; Aleixo-Pais, Isa; Maie, Tiago; Borges, Filipa; Costa, Mafalda; Colmenero-Costeira, Ivo; Casanova, Catarina; Chikhi, Lounes; Zhan, Xiangjian et al.
Source: check_circle
Web of Science Researcher Profile Sync

Lemur inventory of the Analabe forest, SAVA region, and observation of an albino Eulemur

Lemur News
2020 | Journal article
SOURCE-WORK-ID:

cv-prod-id-2146351

Part of ISSN: 0343-3528
Contributors: Le Pors, Barbara; Sgarlata, Gabriele Maria; Salmona, Jordi; Rasolondraibe, Emmanuel; Ralantoharijaona, Tantely; Randriamaroson, Jacquis; Rasoloharijaona, Solofonirina; Andriaholinirina, Nicole Volasoa; CHIKHI, Lounès
Source: check_circle
CIÊNCIAVITAE

Non-invasive Genetics Provide Insights into the Conservation Status of Two Colobine Monkeys in Gola Rainforest National Park, Sierra Leone

Folia Primatologica
2020 | Journal article
Contributors: Borges, Filipa; Aleixo-Pais, Isa; Ferreira da Silva, Maria Joana; Barca, Benjamim; Turay, B. S.; Chikhi, Lounes; Minhos, Tania
Source: check_circle
Web of Science Researcher Profile Sync

Vers une origine graduelle et composite de l’humanité et des cultures modernes

La Recherche
2020 | Magazine article
SOURCE-WORK-ID:

cv-prod-id-1453406

Contributors: CHIKHI, Lounès ; d'Errico, F.
Source: check_circle
CIÊNCIAVITAE

What Do We Know About West African Red Colobus? Inferences from Multidisciplinary Data

Folia Primatologica
2020 | Journal article
Contributors: Minhos, Tania; Chikhi, Lounes; Maie, Tiago; Ferreira da Silva, Maria Joana; Bruford, Michael
Source: check_circle
Web of Science Researcher Profile Sync

Ecology and morphology of mouse lemurs (Microcebus spp.) in a hotspot of microendemism in northeastern Madagascar, with the description of a new species

American Journal of Primatology
2020-09 | Journal article
Contributors: Dominik Schüßler; Marina B. Blanco; Jordi Salmona; Jelmer Poelstra; Jean B. Andriambeloson; Alex Miller; Blanchard Randrianambinina; David W. Rasolofoson; Jasmin Mantilla‐Contreras; Lounès Chikhi et al.
Source: check_circle
Crossref
grade
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Inferring number of populations and changes in connectivity under the n-island model

2020-09-04 | Preprint
Contributors: Armando Arredondo; Beatriz Mourato; Khoa Nguyen; Simon Boitard; Willy Rodríguez; Camille Noûs; Olivier Mazet; Lounès Chikhi
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Genetic consequences of social structure in the golden-crowned sifaka

Heredity
2020-08-13 | Journal article
SOURCE-WORK-ID:

cv-prod-id-2146218

WOSUID:

WOS:000559424000001

Contributors: Parreira, Bárbara; Quéméré, Erwan; Vanpé, Cécile; Carvalho, Inês; Chikhi, Lounès
Source: check_circle
CIÊNCIAVITAE
grade
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Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent

Systematic Biology
2020-07-08 | Journal article
SOURCE-WORK-ID:

cv-prod-id-2146238

WOSUID:

WOS:000637328600001

Contributors: Poelstra, Jelmer W; Salmona, Jordi; Tiley, George P; Schüßler, Dominik; Blanco, Marina B; Andriambeloson, Jean B; Bouchez, Olivier; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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Distribution and conservation status of the endangered Montagne d’Ambre fork-marked lemur (Phaner electromontis)

Journal of Mammalogy
2020-06-26 | Journal article
SOURCE-WORK-ID:

cv-prod-id-2146180

WOSUID:

WOS:000593258300014

Contributors: Hending, Daniel; Sgarlata, Gabriele M; Le Pors, Barbara; Rasolondraibe, Emmanuel; Jan, Fabien; Rakotonanahary, Ando N; Ralantoharijaona, Tantely N; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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Un berceau à l’échelle du continent africain

La Recherche
2020-02 | Magazine article
SOURCE-WORK-ID:

cv-prod-id-3014374

Source: check_circle
CIÊNCIAVITAE

Landscape Genetics Applied to the Conservation of Primates in Flooded Forests: A Case Study of Orangutans in the Lower Kinabatangan Wildlife Sanctuary

Primates in Flooded Habitats
2019 | Book chapter
SOURCE-WORK-ID:

cv-prod-id-1453184

Part of ISBN: 9781316466780
Part of ISBN: 9781107134317
Part of ISBN: 9781107595460
Contributors: Salgado-Lynn, Milena; Jalil, Mohammad Fairus B.; CHIKHI, Lounès ; Ancrenaz, Marc; Ambu, Laurentius N.; Bruford, Michael W.; Goossens, Benoît
Source: check_circle
CIÊNCIAVITAE

The curious case of the Mesolithic Iberian dogs: An archaeogenetic study

Journal of Archaeological Science
2019 | Journal article
Contributors: Pires, Ana Elisabete; Detry, Cleia; Chikhi, Lounes; Rasteiro, Rita; Amorim, Isabel R.; Simoes, Fernanda; Matos, Jose; Petrucci-Fonseca, Francisco; Ollivier, Morgane; Hanni, Catherine et al.
Source: check_circle
Web of Science Researcher Profile Sync

Genetic and morphological diversity of mouse lemurs ( Microcebus spp.) in northern Madagascar: The discovery of a putative new species?

American Journal of Primatology
2019-12 | Journal article
SOURCE-WORK-ID:

cv-prod-id-2146152

WOSUID:

WOS:000500713400001

Contributors: Sgarlata, Gabriele Maria; Salmona, Jordi; Le Pors, Barbara; Rasolondraibe, Emmanuel; Jan, Fabien; Ralantoharijaona, Tantely; Rakotonanahary, Ando; et al.
Source: check_circle
CIÊNCIAVITAE
grade
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Beyond multiregional and simple out-of-Africa models of human evolution

Nature Ecology & Evolution
2019-09-23 | Journal article
SOURCE-WORK-ID:

cv-prod-id-1386858

WOSUID:

WOS:000488304100002

Part of ISSN: 2397-334X
Contributors: Scerri, Eleanor M. L.; Chikhi, Lounès; Thomas, Mark G.
Source: check_circle
CIÊNCIAVITAE
grade
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The curious case of the Mesolithic Iberian dogs: An archaeogenetic study

Journal of Archaeological Science
2019-05 | Journal article
SOURCE-WORK-ID:

cv-prod-id-1387140

Contributors: Pires, Ana Elisabete; Detry, Cleia; CHIKHI, Lounès ; Rasteiro, Rita; Amorim, Isabel R.; Simões, Fernanda; Matos, José; et al.
Source: check_circle
CIÊNCIAVITAE

Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

BMC Genomics
2019-05-03 | Journal article
SOURCE-WORK-ID:

cv-prod-id-1387021

WOSUID:

WOS:000466900900001

Part of ISSN: 1471-2164
Contributors: da Fonseca, Rute R.; Ureña, Irene; Afonso, Sandra; Pires, Ana Elisabete; Jørsboe, Emil; Chikhi, Lounès; Ginja, Catarina
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CIÊNCIAVITAE
grade
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La nascita delle culture umane

Le Scienze
2019-05-03 | Magazine article
SOURCE-WORK-ID:

cv-prod-id-1453390

Contributors: d'Errico, F.; CHIKHI, Lounès
Source: check_circle
CIÊNCIAVITAE

How Demographic History Assists the Conservation of Two Arboreal Primates

Folia Primatologica
2018 | Journal article
Contributors: Minhos, Tania; Maie, Tiago; Chikhi, Lounes; da Silva, Maria Frereira
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Web of Science Researcher Profile Sync

Mouse lemurs’ use of degraded habitat: a review of the literature

Lemur news
2018 | Journal article
SOURCE-WORK-ID:

cv-prod-id-1386675

Contributors: Knoop, Simon Benjamin; CHIKHI, Lounès ; Salmona, Jordi
Source: check_circle
CIÊNCIAVITAE

Ni d’Eve ni d’Adam : les origines Homo sapiens

Archéologia
2018 | Magazine article
SOURCE-WORK-ID:

cv-prod-id-1453385

Contributors: d'Errico, F.; CHIKHI, Lounès
Source: check_circle
CIÊNCIAVITAE
Items per page:
Page 1 of 5

Peer review (6 reviews for 5 publications/grants)

Review activity for Evolutionary applications. (1)
Review activity for Genetics. (1)
Review activity for International journal of primatology. (2)
Review activity for Nature communications (1)
Review activity for Proceedings of the National Academy of Sciences of the United States of America. (1)