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Employment (1)

Los Alamos National Laboratory: Los Alamos, NM, US

1999-06-12 to present | Scientist (CCS-3: INFORMATION SCIENCES)
Employment
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Los Alamos National Laboratory

Education and qualifications (1)

University of Cambridge: Cambridge, Cambridgeshire, GB

1974-10-01 to 1980-12-15 | B.A., M.A., Ph.D. (Biochemistry, MRC Laboratory of Molecular Biology)
Education
Source: Self-asserted source
Judith Cohn

Works (27)

Literature mining of protein-residue associations with graph rules learned through distant supervision

Journal of Biomedical Semantics
2012 | Journal article
Source: Self-asserted source
Judith Cohn

Rapid phylogenetic and functional classification of short genomic fragments with signature peptides

BMC Research Notes
2012 | Journal article
Source: Self-asserted source
Judith Cohn

Text Mining Improves Prediction of Protein Functional Sites

PLOS ONE
2012 | Journal article
DOI: 10.1371/journal.pone.0032171
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Los Alamos National Laboratory

DETECTION OF PROTEIN CATALYTIC SITES IN THE BIOMEDICAL LITERATURE

Biocomputing 2013
2012-11 | Conference paper
DOI: 10.1142/9789814447973_0042
Contributors: KARIN VERSPOOR; ANDREW MACKINLAY; JUDITH D. COHN; MICHAEL E. WALL
Source: Self-asserted source
Judith Cohn via Crossref Metadata Search

Consistency of gene starts among Burkholderia genomes

BMC GENOMICS
2011 | Journal article
DOI: 10.1186/1471-2164-12-125
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Los Alamos National Laboratory

Genome Majority Vote Improves Gene Predictions

PLOS COMPUTATIONAL BIOLOGY
2011 | Journal article
DOI: 10.1371/journal.pcbi.1002284
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Los Alamos National Laboratory

Integration of structure analysis and text mining for improved protein functional site prediction

Automated Function Prediction 2011 SIG at the Intelligent Systems for Molecular Biology meeting
2011 | Conference paper
Source: Self-asserted source
Judith Cohn

Pattern Learning through Distant Supervision for Extraction of Protein-residue Associations in the Biomedical Literature

Proceedings of the 2011 Tenth International Conference on Machine Learning and Applications (ICMLA 2011)
2011 | Journal article
DOI: 10.1109/ICMLA.2011.112
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Los Alamos National Laboratory

Methods for Discovering Analyst-Significant Portions of a Multi-Dimensional Database

2010-05 | Other
Source: Self-asserted source
Judith Cohn

Prediction of Functional Sites in 50,000 Protein Domains Using Dynamics Perturbation Analysis

Biophysical Journal
2009-02 | Journal article
DOI: 10.1016/j.bpj.2008.12.3433
Contributors: Judith D. Cohn; Dengming Ming; Michael E. Wall
Source: Self-asserted source
Judith Cohn via Crossref Metadata Search

Fast dynamics perturbation analysis for prediction of protein functional sites

BMC STRUCTURAL BIOLOGY
2008 | Journal article
DOI: 10.1186/1472-6807-8-5
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Los Alamos National Laboratory

Prediction of functional sites in SCOP domains using dynamics perturbation analysis

Automated Function Prediction - BioSapiens SIG at ISMB 2008
2008 | Conference paper
Source: Self-asserted source
Judith Cohn

Prediction of Functional Sites in SCOP Domains using Dynamics Perturbation Analysis

Nature Precedings
2008-08 | Journal article
DOI: 10.1038/npre.2008.2209
Contributors: Judith Cohn; Judith Cohn; Dengming Ming; Michael Wall
Source: Self-asserted source
Judith Cohn via Crossref Metadata Search

Ligand identification using electron-density map correlations

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
2007 | Journal article
DOI: 10.1107/S0907444906046233
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Los Alamos National Laboratory

A categorization approach to automated ontological function annotation

PROTEIN SCIENCE
2006 | Journal article
DOI: 10.1110/ps.062184006
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Los Alamos National Laboratory

Automated ligand fitting by core-fragment fitting and extension into density

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
2006 | Journal article
DOI: 10.1107/S0907444906017161
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Los Alamos National Laboratory

Automating Ontological Function Annotation: Towards a Common Methodological Framework

submitted to
2005 | Journal article
Source: Self-asserted source
Judith Cohn

Improved Order Theoretical Techniques for GO Functional Annotation

2005 | Journal article
Source: Self-asserted source
Judith Cohn

POSOLE: Automated Ontological Annotation for Function Prediction

Automated Function Prediction
2005 | Journal article
Source: Self-asserted source
Judith Cohn

Protein annotation as term categorization in the Gene Ontology using word proximity networks

BMC Bioinformatics
2005 | Journal article
Source: Self-asserted source
Judith Cohn

Nearest Neighbor Categorization for Function Prediction

CASP 06 abstract book
2004 | Journal article
Source: Self-asserted source
Judith Cohn

Protein annotation as term categorization in the gene ontology

Proceedings of BioCreative Workshop
2004 | Conference paper
Source: Self-asserted source
Judith Cohn

The LANL BioCreAtIvE submission

2004 | Journal article
Source: Self-asserted source
Judith Cohn

The sequence and analysis of duplication-rich human chromosome 16

Nature
2004 | Journal article
Source: Self-asserted source
Judith Cohn

J2EE architecture for informatics support of genomic sequencing

O'Reilly Bioinformatics Technology Conference
2002 | Conference paper
Source: Self-asserted source
Judith Cohn

XML and genomic data

ACM SIGBIO Newsletter
2000 | Journal article
DOI: 10.1145/370954.371003
Contributors: Judith D. Cohn
Source: Self-asserted source
Judith Cohn via Crossref Metadata Search

BIOGRAM: Identifying Similar Proteins by Functional Annotation

Journal article
Source: Self-asserted source
Judith Cohn

Peer review (1 review for 1 publication/grant)

Review activity for PLoS computational biology. (1)
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