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ResearcherID: W-3229-2017
Scopus Author ID: 57196089710

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Türkiye

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Employment (1)

Kutahya Saglik Bilimleri Universitesi: Kutahya, Kütahya, TR

Employment
Source: Self-asserted source
Ayşe Koçak

Education and qualifications (1)

Dokuz Eylül Üniversitesi: Izmir, Izmir, TR

2012-02-07 to 2018-05-17 | PhD (Molecular Medicine)
Education
Source: Self-asserted source
Ayşe Koçak

Professional activities (2)

American Society for Matrix Biology: Bethesda, MD, US

2018 to present
Service
Source: Self-asserted source
Ayşe Koçak

Federation of European Biochemical Societies: Cambridge, GB

2012 to present
Membership
Source: Self-asserted source
Ayşe Koçak

Works (44)

Antimycobacterial activity of luteolin in resistant Mycobacterium tuberculosis isolates and cytotoxicity on L929 cells

Microbial Pathogenesis
2025-03 | Journal article
DOI: 10.1016/j.micpath.2025.107287
Contributors: Elif Aydin; Meliha Koldemir Gunduz; Gullu Kaymak; Ayse Kocak Sezgin; Halime Dağgez; Duygu Percin Renders; Yusuf Yakupoğullari
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Antimicrobial and Antibiofilm Effects of Melittin and Apamin Bee Venoms from Apis mellifera L. on ESKAPE Pathogens and Cytotoxic Effects on L929 Fibroblast Cells

Kafkas Universitesi Veteriner Fakultesi Dergisi
2024 | Journal article
DOI: 10.9775/kvfd.2024.32125
Part of ISSN: 1300-6045
Contributors: Elif AYDIN; Sema CETİNKAYA; Meliha KOLDEMİR GÜNDÜZ; Ayşe KOÇAK SEZGİN
Source: Self-asserted source
Ayşe Koçak

Effects of upadacitinib and PD29 on oxidative damage and inflammation in bleomycin-induced scleroderma model kidney tissues

Marmara Medical Journal
2024 | Journal article
DOI: 10.5472/MARUMJ.1381649
WOSUID: WOS:001345672600003
Contributors: Kocak, Ayse; Koldemir Gunduz, Meliha; Kaymak, Gullu; Aydin, Elif
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Effects of litter size and caging on physical and mental development in rats

Physiology & Behavior
2023 | Journal article
DOI: 10.1016/J.PHYSBEH.2023.114200
WOSUID: WOS:000989924200001
Contributors: Calisir, Meryem; Yilmaz, Osman; Kolatan, Hatice Efsun; Sezgin, Kocak
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Role of p38 MAPK, Akt and NFκB in renoprotective effects of nebivolol on renal ischemia-reperfusion injury in rats

Biotechnic and Histochemistry
2023 | Journal article
DOI: 10.1080/10520295.2023.2212412
WOSUID: WOS:000995151500001
Contributors: Cavdar, Zahide; Kocak, Ayse; Ural, Cemre; Afagh, Aysan; Ersan, Sibel; Ozbal, Seda; Tatli, Merve; Celik, Asli; Arslan, Sevki; Cavdar, Caner
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The effect of the swaddling method on stress levels in newborns administered nasal CPAP

BMC Pediatrics
2023-12-12 | Journal article
DOI: 10.1186/s12887-023-04457-5
Part of ISSN: 1471-2431
Contributors: Zehra Akkoca; Betul Yavuz; Ayşe Koçak Sezgin; Yaşar Bildirici
Source: Self-asserted source
Ayşe Koçak

Lung fibrosis molecular mechanisms

OSMANGAZİ JOURNAL OF MEDICINE
2023-08-14 | Journal article
DOI: 10.20515/otd.1306315
Contributors: Ayşe KOÇAK SEZGİN
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A training strategy from a research problem to a collaborative research environment and to building an innovation culture

FEBS Open Bio
2022 | Journal article
WOSUID: WOS:000821444603235
Contributors: Harmanci, D.; Uygun, Z. O.; Kocak, A.; Demirdover, C.; Sagin, F.; Akdogan, G.
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Downregulation of miR29b-2 is associated with hypertrophic scarring

FEBS Open Bio
2022 | Journal article
WOSUID: WOS:000821444602154
Contributors: Harmanci, D.; Kocak, A.; Demirdover, C.; Akdogan, G.
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The protective effect of alpha lipoic acid on iron sucrose-induced oxidative kidney damage in rats with unilateral nephrectomy by suppressing of p38 MAPK signaling and NFkB p65

FEBS Open Bio
2022 | Journal article
WOSUID: WOS:000821444602137
Contributors: Sahin, A. C.; Oktan, M. A.; Kocak, A.; Ural, C.; Afagh, A.; Heybeli, C.; Sarioglu, S.; Yilmaz, O.; Cavdar, C.; Cavdar, Z.
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Protective effects of alpha-lipoic acid on bleomycin-induced skin fibrosis through the repression of NADPH Oxidase 4 and TGF-β1/Smad3 signaling pathways

Human & Experimental Toxicology
2022-01 | Journal article
DOI: 10.1177/09603271211065975
Contributors: Ayse Kocak; Cemre Ural; Duygu Harmanci; Mehmet Asi Oktan; Aysan Afagh; Sulen Sarioglu; Osman Yilmaz; Merih Birlik; Gul Guner Akdogan; Zahide Cavdar
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Alpha lipoic acid attenuates iron induced oxidative acute kidney injury in rats

Biotechnic and Histochemistry
2021 | Journal article
DOI: 10.1080/10520295.2020.1812001
EID:

2-s2.0-85090951861

Part of ISSN: 14737760 10520295
Contributors: Cavdar, Z.; Oktan, M.A.; Ural, C.; Kocak, A.; Calisir, M.; Heybeli, C.; Yildiz, S.; Ozbal, S.; Arslan, S.; Ergur, B.U. et al.
Source: Self-asserted source
Ayşe Koçak via Scopus - Elsevier
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Alpha-lipoic acid alleviates colistin nephrotoxicity in rats

Human and Experimental Toxicology
2021 | Journal article
DOI: 10.1177/0960327120966043
EID:

2-s2.0-85094635430

Part of ISSN: 14770903 09603271
Contributors: Oktan, M.A.; Heybeli, C.; Ural, C.; Kocak, A.; Bilici, G.; Cavdar, Z.; Ozbal, S.; Arslan, S.; Yilmaz, O.; Cavdar, C.
Source: Self-asserted source
Ayşe Koçak via Scopus - Elsevier
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Possible effects of miR29a downregulation on keloid scar formation

FEBS Open Bio
2021 | Journal article
WOSUID: WOS:000668898600424
Contributors: Harmanci, D.; Kocak, A.; Demirdover, C.; Akdogan, G. Guner
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A preliminary study of possible fibrotic role of meprin metalloproteases in scleroderma patients

Archives of Rheumatology
2021-12-01 | Journal article
DOI: 10.46497/ArchRheumatol.2021.8581
Contributors: Ayşe Koçak; Aydan Köken Avşar; Duygu Harmancı; Gül Akdoğan; A. Merih Birlik
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Evaluation of potential tumor markers that may predict neoadjuvant treatment efficiency in rectal cancer

Turkish Journal of Biochemistry
2021-09-06 | Journal article
DOI: 10.1515/tjb-2020-0507
Contributors: Fatma Demet Arslan; Ayse Kocak; Cengiz Aydın; Emel Ebru Pala; Dilek Oncel; Gulden Diniz; Tayfun Kaya; Levent Ugurlu; Mustafa Degirmenci; Bulent Ozkan et al.
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Relationship of Wnt pathway activity and organ involvement in scleroderma types

International Journal of Rheumatic Diseases
2020-11 | Journal article
DOI: 10.1111/1756-185X.13973
Contributors: Ayşe Koçak; Duygu Harmancı; Gül Güner Akdoğan; Merih Birlik
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Rapid Fibroblast Cell Culture Characterization with Impedimetric Label‐free Heat Shock Protein – 47 Biosensor

Electroanalysis
2020-10 | Journal article
DOI: 10.1002/elan.202060264
Part of ISSN: 1040-0397
Part of ISSN: 1521-4109
Source: Self-asserted source
Ayşe Koçak
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Paricalcitol pretreatment attenuates renal ischemia/reperfusion injury by inhibiting p38 MAPK and activating PI3K/Akt signaling pathways

Turkish Journal of Biochemistry
2019 | Journal article
DOI: 10.1515/tjb-2018-0155
EID:

2-s2.0-85073574934
Contributors: Cavdar, Z.; Ural, C.; Kocak, A.; Arslan, S.; Ersan, S.; Ozbal, S.; Tatli, M.; Dubova, A.; Cavdar, C.
Source: Self-asserted source
Ayşe Koçak via Scopus - Elsevier
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Renoprotective Effects of Alpha Lipoic Acid on Iron Overload-Induced Kidney Injury in Rats by Suppressing NADPH Oxidase 4 and p38 MAPK Signaling.

Biological trace element research
2019-04 | Journal article
DOI: 10.1007/s12011-019-01733-3
PMID: 31025242
Contributors: Cavdar Z; Oktan MA; Ural C; Calisir M; Kocak A; Heybeli C; Yildiz S; Arici A; Ellidokuz H; Celik A et al.
Source: Self-asserted source
Ayşe Koçak via Europe PubMed Central
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Effects of epigallocatechin-3-gallate (EGCG) on a scleroderma model of fibrosis

Turkish Journal of Biochemistry
2018 | Journal article
DOI: 10.1515/tjb-2017-0185
EID:

2-s2.0-85042011483
Contributors: Kocak, A.; Harmancı, D.; Birlik, M.; Sarıoglu, S.; Yılmaz, O.; Cavdar, Z.; Guner, G.
Source: Self-asserted source
Ayşe Koçak via Scopus - Elsevier
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Hypoxia induced transcriptional regulation of the N-Myc down regulated gene 1 (NDRG1) in human brain cancer

FEBS Open Bio
2018 | Journal article
WOSUID: WOS:000437674104064
Contributors: Said, H. M.; Al-Kafaji, G.; Safari, R.; Harmanci, D.; Kocak, A.; Soysal, Y.; Ince, F. D.; Hagemann, C.
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MOLECULAR MECHANISMS MEDIATING ANTIOXIDANT EFFECT OF EPIGALLOCATECHIN-3-GALLATE IN EXPERIMENTAL SCLERODERMA MODEL

Annals of the Rheumatic Diseases
2018 | Journal article
DOI: 10.1136/ANNRHEUMDIS-2018-EULAR.6677
WOSUID: WOS:000444351003584
Contributors: Kocak, A.; Harmanci, D.; Birlik, M.; Guner, G.
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The protective effect of nebivolol on renal ischemia/reperfusion injury in rats through the p38 MAPK and PI3K/Akt signaling pathways

FEBS Open Bio
2018 | Journal article
WOSUID: WOS:000437674103150
Contributors: Kocak, A.; Cavdar, Z.; Ural, C.; Ersan, S.; Arslan, S.; Ozbal, S.; Dubova, A.; Cavdar, C.
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VITAMIN D AND VITAMIN D RECEPTOR IN PATIENTS WITH SCLERODERMA SUBTYPES

Annals of the Rheumatic Diseases
2018 | Journal article
DOI: 10.1136/ANNRHEUMDIS-2018-EULAR.2158
WOSUID: WOS:000444351003585
Contributors: Kocak, A.; Harmanci, D.; Birlik, M.; Guner, G.
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PP-01 AN EXAMPLE OF A SPECIAL STUDY MODULE IN DOKUZ EYLUL SCHOOL OF MEDICINE: THE PROTECTIVE EFFECTS OF LIPOIC ACID VIA PI3K/AKT SIGNALING PATHWAY AGAINST ON CISPLATIN INDUCED TESTICULAR INJURY

Turkish Journal of Biochemistry
2018-09-01 | Journal article
DOI: 10.1515/tjb-2018-43s434
Part of ISSN: 1303-829X
Contributors: Arda Kayataş; Büşra Gül; Ezgi Yıldız; Can Ahmet Karabacak; İbrahim Emik; Ayşe Koçak; Pınar Akokay; Duygu Harmancı; Çetin Pekçetin; Zahide Çavdar
Source: Self-asserted source
Ayşe Koçak via Crossref Metadata Search

PP-021 A SPECIAL STUDY MODULE IN MEDICAL EDUCATION: THE INVESTIGATION OF POSSIBLE PROTECTIVE EFFECTS OF LIPOIC ACID ON P38 MAPK SIGNALING PATHWAY AGAINST CISPLATIN INDUCED TESTICULAR DAMAGE IN RATS

Turkish Journal of Biochemistry
2018-09-01 | Journal article
DOI: 10.1515/tjb-2018-43s454
Part of ISSN: 1303-829X
Contributors: Sedenay Sifil; Beyza Sezer; Hatice Çakırlar; Elif Ekin Tunga; Cemre Ural; Ayşe Koçak; Pınar Akokay; Duygu Harmancı; Çetin Pekçetin; Zahide Çavdar
Source: Self-asserted source
Ayşe Koçak via Crossref Metadata Search

PP-03 ROLE AND LONG-TERM EFFECTS OF SPECIAL STUDY MODULES: RESEARCH TRAINING FOR MEDICAL STUDENTS

Turkish Journal of Biochemistry
2018-09-01 | Journal article
DOI: 10.1515/tjb-2018-43s436
Part of ISSN: 1303-829X
Contributors: Zahide Çavdar; Duygu Harmancı; Ayşe Koçak; Cemre Ural
Source: Self-asserted source
Ayşe Koçak via Crossref Metadata Search

Antioxidant Effect of Epigallocatechin-3-Gallate in a Bleomycin-Induced Scleroderma Model.

Archives of rheumatology
2018-05 | Journal article
DOI: 10.5606/ArchRheumatol.2019.6835
PMC: PMC6542202
Contributors: KOÇAK A; HARMANCI D; ÇAVDAR Z; URAL C; BİRLİK M; SARIOĞLU S; YILMAZ O; GÜNER AKDOĞAN G
Source: Self-asserted source
Ayşe Koçak via Europe PubMed Central
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Evaluation of the first Turkish in vitro diagnostic symposium,Türkiye in vitro diyagnostik sempozyumu’nun değerlendirilmesi

Turkish Journal of Biochemistry
2017 | Journal article
DOI: 10.1515/tjb-2016-0284
EID:

2-s2.0-85017106620
Contributors: Kose, F.A.; Celebi, S.; Cengiz, H.; Harmanci, D.; Kocak, A.; Canbay, E.; Aslan, D.; Sezer, E.; Pabuccuoglu, A.; Kocdor, H.
Source: Self-asserted source
Ayşe Koçak via Scopus - Elsevier
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Fibrosis modulation in scleroderma by epigallocatechin-3-gallate

The FEBS Journal
2017 | Journal article
WOSUID: WOS:000409918902065
Contributors: Kocak, A.; Harmanci, D.; Birlik, M.; Sarioglu, S.; Yilmaz, O.; Cavdar, Z.; Akdogan, G. Guner
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Modulation of the NDRG1 gene expression in a time and oxygen concentration dependent manner in human brain cancer cells

International Journal of Molecular Medicine
2017 | Journal article
WOSUID: WOS:000411659300156
Contributors: Said, H. M.; Al-Kafaji, G.; Safari, R.; Hannanci, D.; Soysal, Y.; Kocak, A.; Ince, F. D.; Emestus, R.; Lohr, M.; Hagemann, C.
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PROTECTIVE EFFECTS OF EPIGALLOCATECHIN 3 GALLATE ON FIBROSIS IN SCLERODERMA MODEL

Annals of the Rheumatic Diseases
2017 | Journal article
DOI: 10.1136/ANNRHEUMDIS-2017-EULAR.2076
WOSUID: WOS:000413181403345
Contributors: Kocak, A.; Harmanci, D.; Birlik, M.; Sarioglu, S.; Akdogan, G. Guner
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The presence of miR-29 family in skin hypertrophic scars and normal skin

The FEBS Journal
2017 | Journal article
WOSUID: WOS:000409918902101
Contributors: Karagulle, D. Harmanci; Kocak, A.; Demirdover, C.; Lebe, B.; Akdogan, G.
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The protective effect of paricalcitol on renal ischemia/reperfusion injury in rats through the inhibition of p38 MAPK signaling pathway

The FEBS Journal
2017 | Journal article
WOSUID: WOS:000409918902104
Contributors: Ural, C.; Cavdar, Z.; Ersan, S.; Kocak, A.; Arslan, S.; Ozbal, S.; Dubova, A.; Cavdar, C.
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Pretreatment with nebivolol attenuates level and expression of matrix metalloproteinases in a rat model of renal ischaemia-reperfusion injury.

Nephrology (Carlton, Vic.)
2017-12 | Journal article
DOI: 10.1111/nep.13007
PMID: 28118507
Contributors: Ersan S; Tanrısev M; Cavdar Z; Celık A; Unlu M; Kocak A; Kose T
Source: Self-asserted source
Ayşe Koçak via Europe PubMed Central
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Pretreatment with paricalcitol attenuates level and expression of matrix metalloproteinases in a rat model of renal ischemia-reperfusion injury
.

Clinical nephrology
2017-11 | Journal article
DOI: 10.5414/cn109121
PMID: 28737133
Contributors: Ersan S; Celik A; Tanrisev M; Kose I; Cavdar Z; Unlu M; Kocak A; Ural C; Yilmaz B; Kose T
Source: Self-asserted source
Ayşe Koçak via Europe PubMed Central
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Role of the microRNA-29 family in fibrotic skin diseases.

Biomedical reports
2017-05 | Journal article
DOI: 10.3892/br.2017.900
PMID: 28584629
PMC: PMC5449962
Contributors: Harmanci D; Erkan EP; Kocak A; Akdogan GG
Source: Self-asserted source
Ayşe Koçak via Europe PubMed Central
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Functional regulation of hypoxia induced genes in human brain cancer

The FEBS Journal
2016 | Journal article
WOSUID: WOS:000383616900257
Contributors: Said, H. M.; Harmanci, D.; Kocak, A.; Gul, G.; Acikgoz, B.; Ince, F. D.; Ural, C.; Soysal, Y.; Hagemann, C.
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Investigation of effects of epigallocatechin-3-gallate on a scleroderma model of fibrosis

The FEBS Journal
2016 | Journal article
WOSUID: WOS:000383616900235
Contributors: Kocak, A.; Sarioglu, S.; Karagulle, D. Harmanci; Birlik, M.; Akdogan, G. Guner
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Molecular regulation of hypoxia induced genes related to bunion cancer

International Journal of Molecular Medicine
2016 | Journal article
WOSUID: WOS:000383733000308
Contributors: Said, Harun M.; Harmanci, Duygu; Kocak, Ayse; Ural, Cemre; Gul, Guler; Acikgoz, Burcu; Ince, FatmaDemet; Soysal, Yasemin; Hagemann, Carsten
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Paricalcitol attenuate activity and expression of matrix metalloproteinases in a rat model of renal ischemia-reperfusion injury

The FEBS Journal
2016 | Journal article
WOSUID: WOS:000383616901496
Contributors: Ersan, S.; Celik, A.; Tanrisev, M.; Kose, I.; Cavdar, Z.; Unlu, M.; Kocak, A.; Ural, C.; Yilmaz, B.; Kose, T.
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The 1st Turkish <i>in vitro</i> diagnostic symposium evaluation

The FEBS Journal
2016 | Journal article
WOSUID: WOS:000383616901461
Contributors: Kose, F. Aydin; Celebi, S.; Cengiz, H.; Harmanci, D.; Kocak, A.; Canbay, E.; Aslan, D.; Sezer, E.; Pabuccuoglu, A.; Kocdor, H.
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A special study module in medical education: A model of scleroderma induced by bleomycin

The FEBS Journal
2015 | Journal article
WOSUID: WOS:000362570606140
Contributors: Kocak, A.; Akdogan, G. Guner
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Peer review (2 reviews for 2 publications/grants)

Review activity for Communications biology. (1)
Review activity for Infection and drug resistance (1)
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