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Employment (3)

京都大学 / Kyoto University: 京都市左京区 / Sakyo, Kyoto, JP

2009-08-01 to present | 教授 / Professor (医学研究科 / Graduate Schools of Medicine)
Employment
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Kyoto University

京都大学 / Kyoto University: 京都市左京区 / Sakyo, Kyoto, JP

2005-07-01 to 2007-03-31 | 助教授 / Associate Professor (医学研究科 / Graduate Schools of Medicine)
Employment
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Kyoto University

京都大学 / Kyoto University: 京都市左京区 / Sakyo, Kyoto, JP

2005-04-01 to 2005-06-30 | 科学技術振興助教授 (医学研究科 / Graduate Schools of Medicine)
Employment
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Kyoto University

Education and qualifications (1)

Univeristy of Tokyo: Tokyo, JP

1986-04-01 to 1992-03-31
Education
Source: Self-asserted source
Ryo Yamada

Works (50 of 185)

Items per page:
Page 1 of 4

Delving into gene-set multiplex networks facilitated by a k-nearest neighbor-based measure of similarity

Computational and Structural Biotechnology Journal
2023 | Journal article
Contributors: Cheng Zheng; Man Wang; Ryo Yamada; Daigo Okada
Source: check_circle
Crossref

Comparative Study of Transcriptome in the Hearts Isolated from Mice, Rats, and Humans

Biomolecules
2022-06-20 | Journal article
Contributors: Daigo Okada; Yosuke Okamoto; Toshiro Io; Miho Oka; Daiki Kobayashi; Suzuka Ito; Ryo Yamada; Kuniaki Ishii; Kyoichi Ono
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Data-driven comparison of multiple high-dimensional single-cell expression profiles

Journal of Human Genetics
2022-04 | Journal article
Contributors: Daigo Okada; Jian Hao Cheng; Cheng Zheng; Ryo Yamada
Source: check_circle
Crossref

Integrated analysis of cell shape and movement in moving frame

Biology Open
2021-03-15 | Journal article
Contributors: Yusri Dwi Heryanto; Chin-Yi Cheng; Yutaka Uchida; Kazushi Mimura; Masaru Ishii; Ryo Yamada
Source: check_circle
Crossref

A Geometry-Based Multiple Testing Correction for Contingency Tables by Truncated Normal Distribution

Statistics in Biosciences
2020 | Journal article
EID:

2-s2.0-85080913073

Part of ISBN:

18671772 18671764

Contributors: Basak, T.; Nagashima, K.; Kajimoto, S.; Kawaguchi, T.; Tabara, Y.; Matsuda, F.; Yamada, R.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Interpretation of omics data analyses

Journal of Human Genetics
2020 | Journal article
EID:

2-s2.0-85084353917

Part of ISBN:

1435232X 14345161

Contributors: Yamada, R.; Okada, D.; Wang, J.; Basak, T.; Koyama, S.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Predicting the treatment response of certolizumab for individual adult patients with rheumatoid arthritis: Protocol for an individual participant data meta-analysis

Systematic Reviews
2020 | Journal article
EID:

2-s2.0-85086603499

Part of ISBN:

20464053

Contributors: Luo, Y.; Chalkou, K.; Yamada, R.; Funada, S.; Funada, S.; Salanti, G.; Furukawa, T.A.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Integrated Analysis of Cell Shape and Movement in Moving Frame

2020-11-05 | Preprint
Contributors: Yusri Dwi Heryanto; Chin-Yi Cheng; Yutaka Uchida; Kazushi Mimura; Masaru Ishii; Ryo Yamada
Source: check_circle
Crossref

Decomposition of a set of distributions in extended exponential family form for distinguishing multiple oligo-dimensional marker expression profiles of single-cell populations and visualizing their dynamics

PLOS ONE
2020-04-10 | Journal article
Contributors: Daigo Okada; Alan D Hutson; Ryo Yamada
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population

European Journal of Human Genetics
2019 | Journal article
EID:

2-s2.0-85060201149

Contributors: Imaizumi, A.; Adachi, Y.; Kawaguchi, T.; Higasa, K.; Tabara, Y.; Sonomura, K.; Sato, T.-A.; Takahashi, M.; Mizukoshi, T.; Yoshida, H.-O. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Genome-wide association analyses identify two susceptibility loci for pachychoroid disease central serous chorioretinopathy

Communications Biology
2019 | Journal article
EID:

2-s2.0-85076591646

Contributors: Hosoda, Y.; Miyake, M.; Schellevis, R.L.; Boon, C.J.F.; Hoyng, C.B.; Miki, A.; Meguro, A.; Sakurada, Y.; Yoneyama, S.; Takasago, Y. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Extension of Sinkhorn Method: Optimal Movement Estimation of Agents Moving at Constant Velocity

Transactions of the Japanese Society for Artificial Intelligence
2019-09-01 | Journal article
Part of ISSN: 1346-0714
Part of ISSN: 1346-8030
Source: Self-asserted source
Ryo Yamada
grade
Preferred source (of 2)‎

CCDC102B confers risk of low vision and blindness in high myopia

Nature Communications
2018 | Journal article
EID:

2-s2.0-85046540463

Contributors: Hosoda, Y.; Yoshikawa, M.; Miyake, M.; Tabara, Y.; Shimada, N.; Zhao, W.; Oishi, A.; Nakanishi, H.; Hata, M.; Akagi, T. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

CFH and VIPR2 as susceptibility loci in choroidal thickness and pachychoroid disease central serous chorioretinopathy

Proceedings of the National Academy of Sciences of the United States of America
2018 | Journal article
EID:

2-s2.0-85049135983

Contributors: Hosoda, Y.; Yoshikawa, M.; Miyake, M.; Tabara, Y.; Ahn, J.; Woo, S.J.; Honda, S.; Sakurada, Y.; Shiragami, C.; Nakanishi, H. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Comprehensive HLA typing from a current allele database using next-generation sequencing data

Methods in Molecular Biology
2018 | Book
EID:

2-s2.0-85048173071

Contributors: Kawaguchi, S.; Higasa, K.; Yamada, R.; Matsuda, F.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Cross-Sectional Epidemiological Analysis of the Nagahama Study for Correlates of Overactive Bladder: Genetic and Environmental Considerations

Journal of Urology
2018 | Journal article
EID:

2-s2.0-85040656335

Contributors: Funada, S.; Kawaguchi, T.; Terada, N.; Negoro, H.; Tabara, Y.; Kosugi, S.; Yamada, R.; Nakayama, T.; Akamatsu, S.; Yoshimura, K. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

In silico study of medical decision-making for rare diseases: Heterogeneity of decision-makers in a population improves overall benefit

PeerJ
2018 | Journal article
EID:

2-s2.0-85054656470

Contributors: Wang, J.; Yamada, R.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers

PLoS ONE
2018 | Journal article
EID:

2-s2.0-85041197251

Contributors: Kawaguchi, T.; Shima, T.; Mizuno, M.; Mitsumoto, Y.; Umemura, A.; Kanbara, Y.; Tanaka, S.; Sumida, Y.; Yasui, K.; Takahashi, M. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Role of selected polymorphisms in determining muscle fiber composition in Japanese men and women

Journal of Applied Physiology
2018 | Journal article
EID:

2-s2.0-85047753696

Contributors: Kumagai, H.; Tobina, T.; Ichinoseki-Sekine, N.; Kakigi, R.; Tsuzuki, T.; Zempo, H.; Shiose, K.; Yoshimura, E.; Kumahara, H.; Ayabe, M. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

In silico study of medical decision-making for rare diseases: heterogeneity of decision-makers in a population improves overall benefit

2018-09-04 | Other
Contributors: Juan Wang; Ryo Yamada
Source: check_circle
Crossref

In silico study of medical decision-making for rare diseases: heterogeneity of decision-makers in a population improves overall benefit

2018-09-04 | Other
Contributors: Juan Wang; Ryo Yamada
Source: check_circle
Crossref

A burden of rare variants in BMPR2 and KCNK3 contributes to a risk of familial pulmonary arterial hypertension

BMC Pulmonary Medicine
2017 | Journal article
EID:

2-s2.0-85018656813

Contributors: Higasa, K.; Ogawa, A.; Terao, C.; Shimizu, M.; Kosugi, S.; Yamada, R.; Date, H.; Matsubara, H.; Matsuda, F.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

A prospective multicenter study on genome wide associations to ranibizumab treatment outcome for age-related macular degeneration /692/699/3161/1626 /692/699/3161/3175 article

Scientific Reports
2017 | Journal article
EID:

2-s2.0-85027990952

Contributors: Yamashiro, K.; Mori, K.; Honda, S.; Kano, M.; Yanagi, Y.; Obana, A.; Sakurada, Y.; Sato, T.; Nagai, Y.; Hikichi, T. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Association of glaucoma-susceptible genes to regional circumpapillary retinal nerve fiber layer thickness and visual field defects

Investigative Ophthalmology and Visual Science
2017 | Journal article
EID:

2-s2.0-85019169646

Contributors: Yoshikawa, M.; Nakanishi, H.; Yamashiro, K.; Miyake, M.; Akagi, T.; Gotoh, N.; Ikeda, H.O.; Suda, K.; Yamada, H.; Hasegawa, T. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Combined association of clinical and lifestyle factors with non-restorative sleep: The Nagahama Study

PLoS ONE
2017 | Journal article
EID:

2-s2.0-85014952970

Contributors: Matsumoto, T.; Tabara, Y.; Murase, K.; Takahashi, Y.; Setoh, K.; Kawaguchi, T.; Muro, S.; Kadotani, H.; Kosugi, S.; Sekine, A. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Exome Sequencing Landscape Analysis in Ovarian Clear Cell Carcinoma Shed Light on Key Chromosomal Regions and Mutation Gene Networks

American Journal of Pathology
2017 | Journal article
EID:

2-s2.0-85028806356

Contributors: Murakami, R.; Matsumura, N.; Brown, J.B.; Higasa, K.; Tsutsumi, T.; Kamada, M.; Abou-Taleb, H.; Hosoe, Y.; Kitamura, S.; Yamaguchi, K. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

HLA-HD: An accurate HLA typing algorithm for next-generation sequencing data

Human Mutation
2017 | Journal article
EID:

2-s2.0-85019101234

Contributors: Kawaguchi, S.; Higasa, K.; Shimizu, M.; Yamada, R.; Matsuda, F.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Polygenic burdens on cell-specific pathways underlie the risk of rheumatoid arthritis

Nature Genetics
2017 | Journal article
EID:

2-s2.0-85021722632

Contributors: Ishigaki, K.; Kochi, Y.; Suzuki, A.; Tsuchida, Y.; Tsuchiya, H.; Sumitomo, S.; Yamaguchi, K.; Nagafuchi, Y.; Nakachi, S.; Kato, R. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

A twin study of rheumatoid arthritis in the Japanese population

Modern Rheumatology
2016 | Journal article
EID:

2-s2.0-84958522995

Contributors: Terao, C.; Ikari, K.; Nakayamada, S.; Takahashi, Y.; Yamada, R.; Ohmura, K.; Hashimoto, M.; Furu, M.; Ito, H.; Fujii, T. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Comprehensive assessment of the expression of the SWI/SNF complex defines two distinct prognostic subtypes of ovarian clear cell carcinoma

Oncotarget
2016 | Journal article
EID:

2-s2.0-84983568234

Contributors: Abou-Taleb, H.; Yamaguchi, K.; Matsumura, N.; Murakami, R.; Nakai, H.; Higasa, K.; Amano, Y.; Abiko, K.; Yoshioka, Y.; Hamanishi, J. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Contribution of a Non-classical HLA Gene, HLA-DOA, to the Risk of Rheumatoid Arthritis

American Journal of Human Genetics
2016 | Journal article
EID:

2-s2.0-84994175707

Contributors: Okada, Y.; Suzuki, A.; Ikari, K.; Terao, C.; Kochi, Y.; Ohmura, K.; Higasa, K.; Akiyama, M.; Ashikawa, K.; Kanai, M. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Decreased severity of experimental autoimmune arthritis in peptidylarginine deiminase type 4 knockout mice

BMC Musculoskeletal Disorders
2016 | Journal article
EID:

2-s2.0-84969758604

Contributors: Suzuki, A.; Kochi, Y.; Shoda, H.; Seri, Y.; Fujio, K.; Sawada, T.; Yamada, R.; Yamamoto, K.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Genome-wide association study of plasma resistin levels identified rs1423096 and rs10401670 as possible functional variants in the Japanese population

Physiological Genomics
2016 | Journal article
EID:

2-s2.0-84995685471

Contributors: Kawamura, R.; Tabara, Y.; Tsukada, A.; Igase, M.; Ohashi, J.; Yamada, R.; Takata, Y.; Kawamoto, R.; Saito, I.; Onuma, H. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Human genetic variation database, a reference database of genetic variations in the Japanese population

Journal of Human Genetics
2016 | Journal article
EID:

2-s2.0-84976541585

Contributors: Higasa, K.; Miyake, N.; Yoshimura, J.; Okamura, K.; Niihori, T.; Saitsu, H.; Doi, K.; Shimizu, M.; Nakabayashi, K.; Aoki, Y. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

LAMPLINK: Detection of statistically significant SNP combinations from GWAS data

Bioinformatics
2016 | Journal article
EID:

2-s2.0-85027518549

Contributors: Terada, A.; Yamada, R.; Tsuda, K.; Sese, J.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Mouth breathing, another risk factor for asthma: The Nagahama Study

Allergy: European Journal of Allergy and Clinical Immunology
2016 | Journal article
EID:

2-s2.0-84963550641

Contributors: Izuhara, Y.; Matsumoto, H.; Nagasaki, T.; Kanemitsu, Y.; Murase, K.; Ito, I.; Oguma, T.; Muro, S.; Asai, K.; Tabara, Y. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Pairwise kinship analysis by the index of chromosome sharing using high-density single nucleotide polymorphisms

PLoS ONE
2016 | Journal article
EID:

2-s2.0-85027281081

Contributors: Morimoto, C.; Manabe, S.; Kawaguchi, T.; Kawai, C.; Fujimoto, S.; Hamano, Y.; Yamada, R.; Matsuda, F.; Tamaki, K.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Prediction of taxane and platinum sensitivity in ovarian cancer based on gene expression profiles

Gynecologic Oncology
2016 | Journal article
EID:

2-s2.0-84961779062

Contributors: Murakami, R.; Matsumura, N.; Brown, J.B.; Wang, Z.; Yamaguchi, K.; Abiko, K.; Yoshioka, Y.; Hamanishi, J.; Baba, T.; Koshiyama, M. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Relationship among Chlamydia and Mycoplasma Pneumoniae Seropositivity, IKZF1 Genotype and Chronic Obstructive Pulmonary Disease in A General Japanese Population

Medicine (United States)
2016 | Journal article
EID:

2-s2.0-84971629628

Contributors: Muro, S.; Tabara, Y.; Matsumoto, H.; Setoh, K.; Kawaguchi, T.; Takahashi, M.; Ito, I.; Ito, Y.; Murase, K.; Terao, C. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Synergistic association of elevated serum free fatty acid and glucose levels with large arterial stiffness in a general population: The Nagahama Study

Metabolism: Clinical and Experimental
2016 | Journal article
EID:

2-s2.0-84949642640

Contributors: Tabara, Y.; Takahashi, Y.; Setoh, K.; Kawaguchi, T.; Gotoh, N.; Terao, C.; Yamada, R.; Kosugi, S.; Sekine, A.; Nakayama, T. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Anti-citrullinated peptide/protein antibody (ACPA)-negative RA shares a large proportion of susceptibility loci with ACPA-positive RA: A meta-analysis of genome-wide association study in a Japanese population

Arthritis Research and Therapy
2015 | Journal article
EID:

2-s2.0-84929298327

Contributors: Terao, C.; Ohmura, K.; Kochi, Y.; Ikari, K.; Okada, Y.; Shimizu, M.; Nishina, N.; Suzuki, A.; Myouzen, K.; Kawaguchi, T. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Calcium, ARMS2 Genotype, and Chlamydia Pneumoniae Infection in Early Age-Related Macular Degeneration: A Multivariate Analysis from the Nagahama Study

Scientific Reports
2015 | Journal article
EID:

2-s2.0-84925353194

Contributors: Nakata, I.; Yamashiro, K.; Kawaguchi, T.; Nakanishi, H.; Akagi-Kurashige, Y.; Miyake, M.; Tsujikawa, A.; Yamada, R.; Matsuda, F.; Yoshimura, N.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Central blood pressure relates more strongly to retinal arteriolar narrowing than brachial blood pressure: The Nagahama Study

Journal of Hypertension
2015 | Journal article
EID:

2-s2.0-84920920343

Contributors: Kumagai, K.; Tabara, Y.; Yamashiro, K.; Miyake, M.; Akagi-Kurashige, Y.; Oishi, M.; Yoshikawa, M.; Kimura, Y.; Tsujikawa, A.; Takahashi, Y. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Descriptive epidemiology of spot urine sodium-topotassiumratio clarified close relationshipwith blood pressure level: The Nagahama study

Journal of Hypertension
2015 | Journal article
EID:

2-s2.0-84947029181

Contributors: Tabara, Y.; Takahashi, Y.; Kumagai, K.; Setoh, K.; Kawaguchi, T.; Takahashi, M.; Muraoka, Y.; Tsujikawa, A.; Gotoh, N.; Terao, C. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Exploring the origin and limitations of kidney regeneration

Journal of Pathology
2015 | Journal article
EID:

2-s2.0-84929274170

Contributors: Endo, T.; Nakamura, J.; Sato, Y.; Asada, M.; Yamada, R.; Takase, M.; Takaori, K.; Oguchi, A.; Iguchi, T.; Higashi, A.Y. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Identification of myopia-associated WNT7B polymorphisms provides insights into the mechanism underlying the development of myopia

Nature Communications
2015 | Journal article
EID:

2-s2.0-84926319050

Contributors: Miyake, M.; Yamashiro, K.; Tabara, Y.; Suda, K.; Morooka, S.; Nakanishi, H.; Khor, C.-C.; Chen, P.; Qiao, F.; Nakata, I. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Isotonic regression based-method in quantitative high-throughput screenings for genotoxicity

Dose-Response
2015 | Journal article
EID:

2-s2.0-84929379193

Contributors: Fujii, Y.; Narita, T.; Tice, R.R.; Takeda, S.; Yamada, R.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier
grade
Preferred source (of 2)‎

Knee pain and low back pain additively disturb sleep in the general population: A cross-sectional analysis of the nagahama study

PLoS ONE
2015 | Journal article
EID:

2-s2.0-84948706317

Contributors: Murase, K.; Tabara, Y.; Ito, H.; Kobayashi, M.; Takahashi, Y.; Setoh, K.; Kawaguchi, T.; Muro, S.; Kadotani, H.; Kosugi, S. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

MMP20 and ARMS2/HTRA1 Are Associated with Neovascular Lesion Size in Age-Related Macular Degeneration

Ophthalmology
2015 | Journal article
EID:

2-s2.0-84940764790

Contributors: Akagi-Kurashige, Y.; Yamashiro, K.; Gotoh, N.; Miyake, M.; Morooka, S.; Yoshikawa, M.; Nakata, I.; Kumagai, K.; Tsujikawa, A.; Yamada, R. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier

Significant association of periodontal disease with anti-citrullinated peptide antibody in a Japanese healthy population - The Nagahama study

Journal of Autoimmunity
2015 | Journal article
EID:

2-s2.0-84928590429

Contributors: Terao, C.; Asai, K.; Hashimoto, M.; Yamazaki, T.; Ohmura, K.; Yamaguchi, A.; Takahashi, K.; Takei, N.; Ishii, T.; Kawaguchi, T. et al.
Source: Self-asserted source
Ryo Yamada via Scopus - Elsevier
Items per page:
Page 1 of 4

Peer review (3 reviews for 2 publications/grants)

Review activity for Journal of human genetics. (1)
Review activity for Rheumatology international. (2)