Personal information

Other IDs

Scopus Author ID: 23003246000

Keywords

bioinformatics, computational biology, machine learning, network inference

Countries

United States

Activities

Collapse all

Employment (4)

Harvard University Wyss Institute for Biologically Inspired Engineering: Boston, MA, US

2015-07 to present | Bioinformatics Lead
Employment
Source: Self-asserted source
Diogo M Camacho

Evelo Biosciences: Cambridge, MA, US

2014-01 to 2015-04 | Senior Scientist
Employment
Source: Self-asserted source
Diogo M Camacho

Ember Therapeutics Inc: Watertown, MA, US

2014-01 to 2014-12 | Senior Scientist
Employment
Source: Self-asserted source
Diogo M Camacho

Pfizer Research Technology Center: Cambridge, MA, US

2011-01 to 2014-01 | Senior Scientist (Computational Sciences CoE)
Employment
Source: Self-asserted source
Diogo M Camacho

Education and qualifications (2)

Virginia Tech: Blacksburg, Virginia, US

2002-07 to 2007-07 | Ph.D. (Genetics, Bioinformatics, and Computational Biology)
Education
Source: Self-asserted source
Diogo M Camacho

Universidade de Lisboa: Lisboa, Lisboa, PT

1995-09 to 2001-10 | B.Sc. (Biochemistry)
Education
Source: Self-asserted source
Diogo M Camacho

Works (21)

Enhancers of Host Immune Tolerance to Bacterial Infection Discovered Using Linked Computational and Experimental Approaches

Advanced Science
2022-09 | Journal article
DOI: 10.1002/advs.202200222
Contributors: Megan M. Sperry; Richard Novak; Vishal Keshari; Alexandre L. M. Dinis; Mark J. Cartwright; Diogo M. Camacho; Jean‐François Paré; Michael Super; Michael Levin; Donald E. Ingber
Source: check_circle
Crossref

Harnessing Colon Chip technology to identify commensal bacteria that promote host tolerance to infection

2020-12-06 | Preprint
DOI: 10.1101/2020.12.05.412353
Contributors: Francesca S. Gazzaniga; Diogo M. Camacho; Meng Wu; Matheus Palazzo; Alexandre Dinis; Francis N. Grafton; Mark J. Cartwright; Michael Super; Dennis L. Kasper; Donald E. Ingber
Source: check_circle
Crossref

Sequence-to-function deep learning frameworks for engineered riboregulators

Nature Communications
2020-10-07 | Journal article
DOI: 10.1038/s41467-020-18676-2
Contributors: Jacqueline A. Valeri; Katherine M. Collins; Pradeep Ramesh; Miguel A. Alcantar; Bianca A. Lepe; Timothy K. Lu; Diogo M. Camacho
Source: check_circle
Crossref

SweetOrigins: Extracting Evolutionary Information from Glycans

2020-04-09 | Preprint
DOI: 10.1101/2020.04.08.031948
Contributors: Daniel Bojar; Rani K. Powers; Diogo M. Camacho; James J. Collins
Source: check_circle
Crossref

Using Natural Language Processing to Learn the Grammar of Glycans

2020-01-11 | Preprint
DOI: 10.1101/2020.01.10.902114
Contributors: Daniel Bojar; Diogo M. Camacho; James J. Collins
Source: check_circle
Crossref

Sequence-to-function deep learning frameworks for synthetic biology

2019-12-10 | Other
DOI: 10.1101/870055
Contributors: Jacqueline Valeri; Katherine M. Collins; Bianca A. Lepe; Timothy K. Lu; Diogo M. Camacho
Source: check_circle
Crossref

A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip.

Nature biomedical engineering
2019-05-13 | Journal article
DOI: 10.1038/s41551-019-0397-0
PMID: 31086325
Source: Self-asserted source
Diogo M Camacho

Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites.

Microbiome
2019-03-20 | Journal article
DOI: 10.1186/s40168-019-0650-5
PMID: 30890187
PMC: PMC6425591
Source: Self-asserted source
Diogo M Camacho

Directed differentiation of human induced pluripotent stem cells into mature kidney podocytes and establishment of a Glomerulus Chip

Nature Protocols
2018-07-11 | Journal article
DOI: 10.1038/s41596-018-0007-8
Contributors: Samira Musah; Nikolaos Dimitrakakis; Diogo M. Camacho; George M. Church; Donald E. Ingber
Source: check_circle
Crossref

Next-Generation Machine Learning for Biological Networks

Cell
2018-06 | Journal article
DOI: 10.1016/j.cell.2018.05.015
Part of ISSN: 0092-8674
Contributors: Diogo M. Camacho; Katherine M. Collins; Rani K. Powers; James C. Costello; James J. Collins
Source: Self-asserted source
Diogo M Camacho via Crossref Metadata Search

Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria

BMC Genomics
2014 | Journal article
DOI: 10.1186/1471-2164-15-121
EID:

2-s2.0-84893679350
Contributors: Pandey, S.P.; Winkler, J.A.; Li, H.; Camacho, D.M.; Collins, J.J.; Walker, G.C.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Fungicidal Drugs Induce a Common Oxidative-Damage Cellular Death Pathway

Cell Reports
2013 | Journal article
DOI: 10.1016/j.celrep.2012.12.021
EID:

2-s2.0-84874233056
Contributors: Belenky, P.; Camacho, D.; Collins, J.J.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

The Mycobacterium tuberculosis regulatory network and hypoxia

Nature
2013 | Journal article
DOI: 10.1038/nature12337
EID:

2-s2.0-84880506145
Contributors: Galagan, J.E.; Minch, K.; Peterson, M.; Lyubetskaya, A.; Azizi, E.; Sweet, L.; Gomes, A.; Rustad, T.; Dolganov, G.; Glotova, I. et al.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Antibiotic-Induced Bacterial Cell Death Exhibits Physiological and Biochemical Hallmarks of Apoptosis

Molecular Cell
2012 | Journal article
DOI: 10.1016/j.molcel.2012.04.027
EID:

2-s2.0-84861978322
Contributors: Dwyer, D.J.; Camacho, D.M.; Kohanski, M.A.; Callura, J.M.; Collins, J.J.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Wisdom of crowds for robust gene network inference

Nature Methods
2012 | Journal article
DOI: 10.1038/nmeth.2016
EID:

2-s2.0-84870305264
Contributors: Marbach, D.; Costello, J.C.; Küffner, R.; Vega, N.M.; Prill, R.J.; Camacho, D.M.; Allison, K.R.; Kellis, M.; Collins, J.J.; Aderhold, A. et al.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Functional characterization of bacterial sRNAs using a network biology approach

Proceedings of the National Academy of Sciences of the United States of America
2011 | Journal article
DOI: 10.1073/pnas.1104318108
EID:

2-s2.0-80053079335
Contributors: Modi, S.R.; Camacho, D.M.; Kohanski, M.A.; Walker, G.C.; Collins, J.J.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Systems Biology Strikes Gold

Cell
2009 | Journal article
DOI: 10.1016/j.cell.2009.03.032
EID:

2-s2.0-63249114107
Contributors: Camacho, D.M.; Collins, J.J.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Comparison of reverse-engineering methods using an in Silico network

Annals of the New York Academy of Sciences
2007 | Book
DOI: 10.1196/annals.1407.006
EID:

2-s2.0-36248953897
Contributors: Camacho, D.; Licona, P.V.; Mendes, P.; Laubenbacher, R.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Modelling and simulation for metabolomics data analysis

Biochemical Society Transactions
2005 | Journal article
DOI: 10.1042/BST20051427
EID:

2-s2.0-28844432005
Contributors: Mendes, P.; Camacho, D.; De La Fuente, A.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

The origin of correlations in metabolomics data

Metabolomics
2005-03 | Journal article
DOI: 10.1007/s11306-005-1107-3
Contributors: Diogo Camacho; Alberto de la Fuente; Pedro Mendes
Source: Self-asserted source
Diogo M Camacho via Crossref Metadata Search

A systems biology study of two distinct growth phases of Saccharomyces cerevisiae cultures

Current Genomics
2004 | Journal article
DOI: 10.2174/1389202043348643
EID:

2-s2.0-10644224417
Contributors: Martins, A.M.; Camacho, D.; Shuman, J.; Sha, W.; Mendes, P.; Shulaev, V.
Source: Self-asserted source
Diogo M Camacho via Scopus - Elsevier

Peer review (2 reviews for 2 publications/grants)

Review activity for BMC bioinformatics (1)
Review activity for Nature communications (1)
How many people are using ORCID?