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Works (10)

ResiDEM: Analytical Tool for Isomorphous Difference Electron Density Maps Utilizing Dynamic Residue Identification via Density Clustering

Journal of Chemical Information and Modeling
2024-10-14 | Journal article
Contributors: Sriram Srinivasa Raghavan; Osamu Miyashita
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Modeling Conformational Transitions of Biomolecules from Atomic Force Microscopy Images using Normal Mode Analysis

The Journal of Physical Chemistry B
2024-10-03 | Journal article
Contributors: Xuan Wu; Osamu Miyashita; Florence Tama
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Structure determination using high-order spatial correlations in single-particle X-ray scattering

IUCrJ
2024-01-01 | Journal article
Contributors: Wenyang Zhao; Osamu Miyashita; Miki Nakano; Florence Tama
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Advancing cryo-electron microscopy data analysis through accelerated simulation-based flexible fitting approaches

Current Opinion in Structural Biology
2023-10 | Journal article
Contributors: Osamu Miyashita; Florence Tama
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Composable Workflow for Accelerating Neural Architecture Search Using In Situ Analytics for Protein Classification

2023-08-07 | Conference paper
Contributors: Georgia Channing; Ria Patel; Paula Olaya; Ariel Rorabaugh; Osamu Miyashita; Silvina Caino-Lores; Catherine Schuman; Florence Tama; Michela Taufer
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Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction

Structural Dynamics
2023-03 | Journal article
Contributors: Miki Nakano; Osamu Miyashita; Florence Tama
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Computational investigation of the conformational dynamics in Tom20‐mitochondrial presequence tethered complexes

Proteins: Structure, Function, and Bioinformatics
2019-01 | Journal article
Contributors: Arpita Srivastava; Florence Tama; Daisuke Kohda; Osamu Miyashita
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Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics

International Journal of Molecular Sciences
2018-10-30 | Journal article
Contributors: Ashutosh Srivastava; Tetsuro Nagai; Arpita Srivastava; Osamu Miyashita; Florence Tama
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Single-particle XFEL 3D reconstruction of ribosome-size particles based on Fourier slice matching: requirements to reach subnanometer resolution

Journal of Synchrotron Radiation
2018-07-01 | Journal article
Contributors: Miki Nakano; Osamu Miyashita; Slavica Jonic; Atsushi Tokuhisa; Florence Tama
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Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL

Journal of Synchrotron Radiation
2017-07-01 | Journal article
Contributors: Miki Nakano; Osamu Miyashita; Slavica Jonic; Changyong Song; Daewoong Nam; Yasumasa Joti; Florence Tama
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Peer review (5 reviews for 3 publications/grants)

Review activity for Journal of chemical information and modeling. (3)
Review activity for Nature communications (1)
Review activity for PloS one. (1)