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Works (50)

Quantitative fragmentomics allow affinity mapping of interactomes

Nature Communications
2022-09-17 | Journal article
Contributors: Gergo Gogl; Boglarka Zambo; Camille Kostmann; Alexandra Cousido-Siah; Bastien Morlet; Fabien Durbesson; Luc Negroni; Pascal Eberling; Pau Jané; Yves Nominé et al.
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Crossref

Conformational editing of intrinsically disordered protein by α-methylation

Chemical Science
2021 | Journal article
Contributors: Valentin Bauer; Boris Schmidtgall; Gergő Gógl; Jozica Dolenc; Judit Osz; Yves Nominé; Camille Kostmann; Alexandra Cousido-Siah; André Mitschler; Natacha Rochel et al.
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Crossref

Interactomic affinity profiling by holdup assay: Acetylation and distal residues impact the PDZome-binding specificity of PTEN phosphatase.

PloS one
2020-12 | Journal article
Contributors: Jané P; Gógl G; Kostmann C; Bich G; Girault V; Caillet-Saguy C; Eberling P; Vincentelli R; Wolff N; Travé G et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

FFAT motif phosphorylation controls formation and lipid transfer function of inter-organelle contacts.

The EMBO journal
2020-10 | Journal article
Contributors: Di Mattia T; Martinet A; Ikhlef S; McEwen AG; Nominé Y; Wendling C; Poussin-Courmontagne P; Voilquin L; Eberling P; Ruffenach F et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central
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Preferred source (of 2)‎

Corrigendum: The GIP Gamma-Tubulin Complex-Associated Proteins are Involved in Nuclear Architecture in <i>Arabidopsis Thaliana</i>.

Frontiers in plant science
2020-09 | Journal article
Contributors: Batzenschlager M; Masoud K; Janski N; Houlné G; Herzog E; Evrard JL; Baumberger N; Erhardt M; Nominé Y; Kieffer B et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Modular Conjugation of a Potent Anti-HER2 Immunotoxin Using Coassociating Peptides.

Bioconjugate chemistry
2020-09 | Journal article
Contributors: Stoessel A; Groysbeck N; Guyot L; Barret L; Nominé Y; Nguekeu-Zebaze L; Bender A; Voilquin L; Lutz T; Pallaoro N et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Interactomic affinity profiling by holdup assay: acetylation and distal residues impact the PDZome-binding specificity of PTEN phosphatase

2020-07 | Preprint
Contributors: Jané P; Gógl G; Kostmann C; Bich G; Girault V; Caillet-Saguy C; Eberling P; Vincentelli R; Wolff N; Travé G et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Benchtop holdup assay for quantitative affinity-based analysis of sequence determinants of protein-motif interactions.

Analytical biochemistry
2020-05 | Journal article
Contributors: Bonhoure A; Forster A; Babah KO; Gógl G; Eberling P; Kostmann C; Volkmer R; Tapia Mancilla V; Travé G; Nominé Y
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Dual Specificity PDZ- and 14-3-3-Binding Motifs: A Structural and Interactomics Study.

Structure (London, England : 1993)
2020-04 | Journal article
Contributors: Gogl G; Jane P; Caillet-Saguy C; Kostmann C; Bich G; Cousido-Siah A; Nyitray L; Vincentelli R; Wolff N; Nomine Y et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Enhancing Binding Affinity of an Intrinsically Disordered Protein by α-Methylation of Key Amino Acid Residues

2019-11 | Preprint
Contributors: Bauer V; Schmidtgall B; Gógl G; Dolenc J; Osz J; Nominé Y; Kostmann C; Cousido-Siah A; Mitschler A; Rochel N et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Self-Associating Peptides for Modular Bifunctional Conjugation of Tetramer Macromolecules in Living Cells.

Bioconjugate chemistry
2019-05 | Journal article
Contributors: Vigneron M; Dietsch F; Bianchetti L; Dejaegere A; Nominé Y; Cordonnier A; Zuber G; Chatton B; Donzeau M
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Rewiring of RSK-PDZ Interactome by Linear Motif Phosphorylation.

Journal of molecular biology
2019-02 | Journal article
Contributors: Gógl G; Biri-Kovács B; Durbesson F; Jane P; Nomine Y; Kostmann C; Bilics V; Simon M; Reményi A; Vincentelli R et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

High-Quality Data of Protein/Peptide Interaction by Isothermal Titration Calorimetry.

Methods in molecular biology (Clifton, N.J.)
2019-01 | Journal article
Contributors: Ramirez J; Nominé Y
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

High-Throughput Production of a New Library of Human Single and Tandem PDZ Domains Allows Quantitative PDZ-Peptide Interaction Screening Through High-Throughput Holdup Assay.

Methods in molecular biology (Clifton, N.J.)
2019-01 | Journal article
Contributors: Duhoo Y; Girault V; Turchetto J; Ramond L; Durbesson F; Fourquet P; Nominé Y; Cardoso V; Sequeira AF; Brás JLA et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

One-step affinity purification of fusion proteins with optimal monodispersity and biological activity: application to aggregation-prone HPV E6 proteins.

Microbial cell factories
2018-12 | Journal article
Contributors: Bonhoure A; Demenge A; Kostmann C; San José L; De la Cal E; Armisen P; Nominé Y; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

SynAggreg: A Multifunctional High-Throughput Technology for Precision Study of Amyloid Aggregation and Systematic Discovery of Synergistic Inhibitor Compounds

Journal of Molecular Biology
2018-12 | Journal article
Contributors: Hubert Aviolat; Yves Nominé; Sophie Gioria; Anna Bonhoure; David Hoffmann; Christine Ruhlmann; Hélène Nierengarten; Frank Ruffenach; Pascal Villa; Yvon Trottier et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Rewiring of RSK-PDZ interactions by linear motif phosphorylation

2018-09 | Preprint
Contributors: Gogl G; Biri-Kovacs B; Durbesson F; Jane P; Nomine Y; Kostmann C; Bilics V; Simon M; Remenyi A; Vincentelli R et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Identification of MOSPD2, a novel scaffold for endoplasmic reticulum membrane contact sites.

EMBO reports
2018-06 | Journal article
Contributors: Di Mattia T; Wilhelm LP; Ikhlef S; Wendling C; Spehner D; Nominé Y; Giordano F; Mathelin C; Drin G; Tomasetto C et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Relationship between the agonist activity of synthetic ligands of TRAIL-R2 and their cell surface binding modes.

Oncotarget
2018-02 | Journal article
Contributors: Chekkat N; Lombardo CM; Seguin C; Lechner MC; Dufour F; Nominé Y; De Giorgi M; Frisch B; Micheau O; Guichard G et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Mapping the interactome of HPV E6 and E7 oncoproteins with the ubiquitin-proteasome system.

The FEBS journal
2017-08 | Journal article
Contributors: Poirson J; Biquand E; Straub ML; Cassonnet P; Nominé Y; Jones L; van der Werf S; Travé G; Zanier K; Jacob Y et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Peptide-Protein Binding Investigated by Far-IR Spectroscopy and Molecular Dynamics Simulations.

Biophysical journal
2017-06 | Journal article
Contributors: Cote Y; Nominé Y; Ramirez J; Hellwig P; Stote RH
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Antibody Binding Selectivity: Alternative Sets of Antigen Residues Entail High-Affinity Recognition.

PloS one
2015-12 | Journal article
Contributors: Nominé Y; Choulier L; Travé G; Vernet T; Altschuh D
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Quantifying domain-ligand affinities and specificities by high-throughput holdup assay.

Nature methods
2015-06 | Journal article
Contributors: Vincentelli R; Luck K; Poirson J; Polanowska J; Abdat J; Blémont M; Turchetto J; Iv F; Ricquier K; Straub ML et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Spot peptide arrays and SPR measurements: throughput and quantification in antibody selectivity studies.

Journal of molecular recognition : JMR
2015-05 | Journal article
Contributors: Vernet T; Choulier L; Nominé Y; Bellard L; Baltzinger M; Travé G; Altschuh D
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Disorder-to-order transition of MAGI-1 PDZ1 C-terminal extension upon peptide binding: thermodynamic and dynamic insights.

Biochemistry
2015-02 | Journal article
Contributors: Ramírez J; Recht R; Charbonnier S; Ennifar E; Atkinson RA; Travé G; Nominé Y; Kieffer B
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Reversible amyloid fiber formation in the N terminus of androgen receptor.

Chembiochem : a European journal of chemical biology
2014-09 | Journal article
Contributors: Asencio-Hernández J; Ruhlmann C; McEwen A; Eberling P; Nominé Y; Céraline J; Starck JP; Delsuc MA
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Intracellular delivery of functionally active proteins using self-assembling pyridylthiourea-polyethylenimine.

Journal of controlled release : official journal of the Controlled Release Society
2014-01 | Journal article
Contributors: Postupalenko V; Sibler AP; Desplancq D; Nominé Y; Spehner D; Schultz P; Weiss E; Zuber G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

TRAF4 is a novel phosphoinositide-binding protein modulating tight junctions and favoring cell migration.

PLoS biology
2013-12 | Journal article
Contributors: Rousseau A; McEwen AG; Poussin-Courmontagne P; Rognan D; Nominé Y; Rio MC; Tomasetto C; Alpy F
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

The GIP gamma-tubulin complex-associated proteins are involved in nuclear architecture in Arabidopsis thaliana.

Frontiers in plant science
2013-11 | Journal article
Contributors: Batzenschlager M; Masoud K; Janski N; Houlné G; Herzog E; Evrard JL; Baumberger N; Erhardt M; Nominé Y; Kieffer B et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Chemical library screening using a SPR-based inhibition in solution assay: simulations and experimental validation.

Analytical chemistry
2013-08 | Journal article
Contributors: Choulier L; Nominé Y; Zeder-Lutz G; Charbonnier S; Didier B; Jung ML; Altschuh D
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Sequence and structure requirements for specific recognition of HIV-1 TAR and DIS RNA by the HIV-1 Vif protein.

RNA biology
2012-07 | Journal article
Contributors: Freisz S; Mezher J; Hafirassou L; Wolff P; Nominé Y; Romier C; Dumas P; Ennifar E
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Putting into practice domain-linear motif interaction predictions for exploration of protein networks.

PloS one
2011-11 | Journal article
Contributors: Luck K; Fournane S; Kieffer B; Masson M; Nominé Y; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Proteasomal degradation of p53 by human papillomavirus E6 oncoprotein relies on the structural integrity of p53 core domain.

PloS one
2011-10 | Journal article
Contributors: Bernard X; Robinson P; Nominé Y; Masson M; Charbonnier S; Ramirez-Ramos JR; Deryckere F; Travé G; Orfanoudakis G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Strategies for bacterial expression of protein-peptide complexes: application to solubilization of papillomavirus E6.

Protein expression and purification
2011-07 | Journal article
Contributors: Sidi AO; Babah KO; Brimer N; Nominé Y; Romier C; Kieffer B; Pol SV; Travé G; Zanier K
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

The structural and dynamic response of MAGI-1 PDZ1 with noncanonical domain boundaries to the binding of human papillomavirus E6.

Journal of molecular biology
2011-01 | Journal article
Contributors: Charbonnier S; Nominé Y; Ramírez J; Luck K; Chapelle A; Stote RH; Travé G; Kieffer B; Atkinson RA
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Surface plasmon resonance analysis of the binding of high-risk mucosal HPV E6 oncoproteins to the PDZ1 domain of the tight junction protein MAGI-1.

Journal of molecular recognition : JMR
2010-09 | Journal article
Contributors: Fournane S; Charbonnier S; Chapelle A; Kieffer B; Orfanoudakis G; Travé G; Masson M; Nominé Y
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Molecular basis for the association of human E4B U box ubiquitin ligase with E2-conjugating enzymes UbcH5c and Ubc4.

Structure (London, England : 1993)
2010-08 | Journal article
Contributors: Benirschke RC; Thompson JR; Nominé Y; Wasielewski E; Juranić N; Macura S; Hatakeyama S; Nakayama KI; Botuyan MV; Mer G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Prevalence of intrinsic disorder in the hepatitis C virus ARFP/Core+1/S protein.

The FEBS journal
2010-01 | Journal article
Contributors: Boumlic A; Nominé Y; Charbonnier S; Dalagiorgou G; Vassilaki N; Kieffer B; Travé G; Mavromara P; Orfanoudakis G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Kinetic analysis of interaction of BRCA1 tandem breast cancer c-terminal domains with phosphorylated peptides reveals two binding conformations.

Biochemistry
2008-08 | Journal article
Contributors: Nominé Y; Botuyan MV; Bajzer Z; Owen WG; Caride AJ; Wasielewski E; Mer G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Formation of well-defined soluble aggregates upon fusion to MBP is a generic property of E6 proteins from various human papillomavirus species.

Protein expression and purification
2006-09 | Journal article
Contributors: Zanier K; Nominé Y; Charbonnier S; Ruhlmann C; Schultz P; Schweizer J; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Structural and functional analysis of E6 oncoprotein: insights in the molecular pathways of human papillomavirus-mediated pathogenesis.

Molecular cell
2006-03 | Journal article
Contributors: Nominé Y; Masson M; Charbonnier S; Zanier K; Ristriani T; Deryckère F; Sibler AP; Desplancq D; Atkinson RA; Weiss E et al.
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Kinetic analysis of the interactions of human papillomavirus E6 oncoproteins with the ubiquitin ligase E6AP using surface plasmon resonance.

Journal of molecular biology
2005-04 | Journal article
Contributors: Zanier K; Charbonnier S; Baltzinger M; Nominé Y; Altschuh D; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

1H and 15N resonance assignment, secondary structure and dynamic behaviour of the C-terminal domain of human papillomavirus oncoprotein E6.

Journal of biomolecular NMR
2005-02 | Journal article
Contributors: Nominé Y; Charbonnier S; Miguet L; Potier N; Van Dorsselaer A; Atkinson RA; Travé G; Kieffer B
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Structural basis of BACH1 phosphopeptide recognition by BRCA1 tandem BRCT domains.

Structure (London, England : 1993)
2004-07 | Journal article
Contributors: Botuyan MV; Nominé Y; Yu X; Juranic N; Macura S; Chen J; Mer G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Domain substructure of HPV E6 oncoprotein: biophysical characterization of the E6 C-terminal DNA-binding domain.

Biochemistry
2003-05 | Journal article
Contributors: Nominé Y; Charbonnier S; Ristriani T; Stier G; Masson M; Cavusoglu N; Van Dorsselaer A; Weiss E; Kieffer B; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Protein mutagenesis with monodispersity-based quality probing: selective inactivation of p53 degradation and DNA-binding properties of HPV E6 oncoprotein.

Protein expression and purification
2002-12 | Journal article
Contributors: Ristriani T; Nominé Y; Laurent C; Weiss E; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Formation of soluble inclusion bodies by hpv e6 oncoprotein fused to maltose-binding protein.

Protein expression and purification
2001-10 | Journal article
Contributors: Nominé Y; Ristriani T; Laurent C; Lefèvre JF; Weiss E; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

A strategy for optimizing the monodispersity of fusion proteins: application to purification of recombinant HPV E6 oncoprotein.

Protein engineering
2001-04 | Journal article
Contributors: Nominé Y; Ristriani T; Laurent C; Lefèvre JF; Weiss E; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

Specific recognition of four-way DNA junctions by the C-terminal zinc-binding domain of HPV oncoprotein E6.

Journal of molecular biology
2001-01 | Journal article
Contributors: Ristriani T; Nominé Y; Masson M; Weiss E; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central

HPV oncoprotein E6 is a structure-dependent DNA-binding protein that recognizes four-way junctions.

Journal of molecular biology
2000-03 | Journal article
Contributors: Ristriani T; Masson M; Nominé Y; Laurent C; Lefevre JF; Weiss E; Travé G
Source: Self-asserted source
Yves Nominé via Europe PubMed Central