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Multimodal Machine-Learning, Health AI, Proteomics, Neuroinformatics, High Performance Computing
United States

Activities

Employment (3)

Florida International University: Miami, US

Employment
Source: check_circle
Florida International University - Symplectic Elements

Florida International University: Miami, FL, US

2018-08-06 to present | Associate Professor (School of Computing and Information Sciences)
Employment
Source: Self-asserted source
Fahad Saeed

Western Michigan University: Kalamazoo, MI, US

2014-01 to 2018-07-01 | Assistant Professor (Computer Science/Electrical & Computer Engineering)
Employment
Source: Self-asserted source
Fahad Saeed

Education and qualifications (2)

National Institutes of Health: Bethesda, MD, US

2010-08 to 2014-01 | Postdoctoral Fellow (Systems Biology Center, NHLBI)
Education
Source: Self-asserted source
Fahad Saeed

University of Illinois at Chicago: Chicago, IL, US

2006-08 to 2010-08 | PhD (Electrical & Computer Engineering)
Education
Source: Self-asserted source
Fahad Saeed

Funding (5)

CRII: SHF: HPC Solutions to Big NGS Data Compression

2018-09-01 to 2020-01-31 | Grant
Directorate for Computer & Information Science & Engineering (Arlington, US)
GRANT_NUMBER: 1855441
Source: Self-asserted source
Fahad Saeed via DimensionsWizard

CAREER: Towards Fast and Scalable Algorithms for Big Proteogenomics Data Analytics

2017-04-01 to 2022-03-31 | Grant
Directorate for Computer & Information Science & Engineering (Arlington, US)
GRANT_NUMBER: 1651724
Source: Self-asserted source
Fahad Saeed via DimensionsWizard

Parallel Algorithms for Big Data from Mass Spectrometry based Proteomics

2017-04-01 to 2020-03-31 | Grant
National Institute of General Medical Sciences (Bethesda, US)
GRANT_NUMBER: R15GM120820
Source: Self-asserted source
Fahad Saeed via DimensionsWizard

CRII: SHF: HPC Solutions to Big NGS Data Compression

2015-02-01 to 2018-11-30 | Grant
Directorate for Computer & Information Science & Engineering (Arlington, US)
GRANT_NUMBER: 1464268
Source: Self-asserted source
Fahad Saeed via DimensionsWizard

EAGER: High Performance Algorithms and Implementatations for Genome Alignment

2012-09-01 to 2014-07-31 | Grant
Directorate for Computer & Information Science & Engineering (Arlington, US)
GRANT_NUMBER: 1250264
Source: Self-asserted source
Fahad Saeed via DimensionsWizard

Works (50 of 224)

Items per page:
Page 1 of 5

Communication Evaluation of a Wireless 4-Channel Wearable EEG for Brain-Computer Interface (BCI) and Healthcare Applications

Conference Proceedings - IEEE SOUTHEASTCON
2024 | Conference paper
SOURCE-WORK-ID:

294369

Part of ISSN: 1091-0050
WOSUID:

WOS:001219464000148

Contributors: Abhishek Bhattarai; Umair Mohammad; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Heterogeneity Aware Distributed Machine Learning at the Wireless Edge for Health IoT Applications: An EEG Data Case Study

Big and Integrated Artificial Intelligence
2024 | Book chapter
SOURCE-WORK-ID:

299949

Part of ISSN: 2662-4133
Part of ISBN: 9783031575662
Contributors: Umair Mohammad; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

MLSPred-Bench: ML-Ready Benchmark Leveraging Seizure Detection EEG data for Predictive Models

2024 | Other
SOURCE-WORK-ID:

301683

Part of ISSN: 2692-8205
Contributors: Umair Mohammad; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Robustness of ML-Based Seizure Prediction Using Noisy EEG Data From Limited Channels

2024 20TH INTERNATIONAL CONFERENCE ON DISTRIBUTED COMPUTING IN SMART SYSTEMS AND THE INTERNET OF THINGS, DCOSS-IOT 2024
2024 | Conference paper
SOURCE-WORK-ID:

302103

Part of ISSN: 2325-2936
WOSUID:

WOS:001298122900086

Contributors: Umair Mohammad; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Biomarkers.

Alzheimer's and Dementia
2024-12 | Journal article
SOURCE-WORK-ID:

308705

Part of ISSN: 1552-5260
Contributors: Maryam Akhavan Aghdam; Serdar Bozdag; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Developing Topics.

Alzheimer's and Dementia
2024-12 | Journal article
SOURCE-WORK-ID:

308704

Part of ISSN: 1552-5260
Contributors: Yashu Vashishath; Sarah Beaver; Serdar Bozdag; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Basic Science and Pathogenesis

Alzheimer's and Dementia
2024-12-01 | Journal article
SOURCE-WORK-ID:

308164

Part of ISSN: 1552-5260
Contributors: M T Rahman; Fahad Saeed; S Bozdag
Source: check_circle
Florida International University - Symplectic Elements

Basic Science and Pathogenesis

Alzheimer's and Dementia
2024-12-01 | Journal article
SOURCE-WORK-ID:

308321

Part of ISSN: 1552-5260
Contributors: M A Olaimat; S Bozdag; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Identifying Alzheimer's disease-associated genes using PhenoGeneRanker.

bioRxiv
2024-11-15 | Other
SOURCE-WORK-ID:

306814

Part of ISSN: 2692-8205
Contributors: Most Tahmina Rahman; Fahad Saeed; Serdar Bozdag; Alzheimer’s Disease Neuroimaging Initiative
Source: check_circle
Florida International University - Symplectic Elements

Predicting peptide properties from mass spectrometry data using deep attention-based multitask network and uncertainty quantification.

bioRxiv
2024-08-22 | Journal article
SOURCE-WORK-ID:

303710

Part of ISSN: 2692-8205
Contributors: Usman Tariq; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Lightweight Transformer exhibits comparable performance to LLMs for Seizure Prediction: A case for light-weight models for EEG data

Proceedings - 2024 IEEE International Conference on Big Data, BigData 2024
2024-01-01 | Conference paper
SOURCE-WORK-ID:

309164

Part of ISSN: 2639-1589
Contributors: P Parani; Umair Mohammad; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Making MS Omics Data ML-Ready: SpeCollate Protocols

Methods in molecular biology (Clifton, N.J.)
2024-01-01 | Book chapter
SOURCE-WORK-ID:

301298

Part of ISSN: 1064-3745
Part of ISBN: 9781071640067
Contributors: M U Tariq; S Ebert; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Pvtad: Alzheimer's Disease Diagnosis Using Pyramid Vision Transformer Applied to White Matter of T1-Weighted Structural Mri Data

Proceedings - International Symposium on Biomedical Imaging
2024-01-01 | Conference paper
SOURCE-WORK-ID:

304203

Part of ISSN: 1945-7928
Contributors: M A Aghdam; S Bozdag; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Sumesh Kumar, Fahad Saeed, “Systems and methods for matching mass spectrometry data with a peptide database”, US Patent # 11,842,799

US Patent # 11,842,799
2023-12-12 | Patent
Contributors: Fahad Saeed; Sumesh Kumar
Source: Self-asserted source
Fahad Saeed

PVTAD: ALZHEIMER'S DISEASE DIAGNOSIS USING PYRAMID VISION TRANSFORMER APPLIED TO WHITE MATTER OF T1-WEIGHTED STRUCTURAL MRI DATA.

bioRxiv
2023-12-04 | Other
SOURCE-WORK-ID:

286186

Part of ISSN: 2692-8205
Contributors: Maryam Akhavan Aghdam; Serdar Bozdag; Fahad Saeed; Alzheimer’s Disease Neuroimaging Initiative
Source: check_circle
Florida International University - Symplectic Elements

Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data

Neuroinformatics
2023-10 | Journal article
SOURCE-WORK-ID:

279555

Part of ISSN: 1539-2791
WOSUID:

WOS:001048365700001

Contributors: Oswaldo Artiles; Zeina Al Masry; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

GPU-acceleration of the distributed-memory database peptide search of mass spectrometry data

Scientific Reports
2023-10-31 | Journal article
SOURCE-WORK-ID:

283989

Part of ISSN: 2045-2322
WOSUID:

WOS:001123935800004

Contributors: Muhammad Haseeb; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Fahad Saeed, and Sumesh Kumar, “Systems and Methods for matching mass spectrometry data with a peptide database”, United States Patent and Trademark Office (USPTO), U.S. Department of Commerce, US Patent # 11,798,654 B1

US Patent # 11,798,654 B1
2023-10-24 | Patent
Contributors: Fahad Saeed; Sumesh Kumar
Source: Self-asserted source
Fahad Saeed

PPAD: a deep learning architecture to predict progression of Alzheimer's disease

Bioinformatics
2023-06-30 | Journal article
SOURCE-WORK-ID:

277657

Part of ISSN: 1367-4803
WOSUID:

WOS:001027457000021

Contributors: Mohammad Al Olaimat; Jared Martinez; Fahad Saeed; Serdar Bozdag
Source: check_circle
Florida International University - Symplectic Elements

PPAD: A deep learning architecture to predict progression of Alzheimer's disease.

bioRxiv
2023-01-31 | Other
SOURCE-WORK-ID:

255381

Part of ISSN: 2692-8205
Contributors: Mohammad Al Olaimat; Jared Martinez; Fahad Saeed; Serdar Bozdag; Alzheimer’s Disease Neuroimaging Initiative
Source: check_circle
Florida International University - Symplectic Elements

ASD-GResTM: Deep Learning Framework for ASD classification using Gramian Angular Field

Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023
2023-01-01 | Conference paper
SOURCE-WORK-ID:

288249

Part of ISSN: 2156-1125
Contributors: F Almuqhim; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Energy Efficient AI/ML based Continuous Monitoring at the Edge: ECG and EEG Case Study

Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023
2023-01-01 | Conference paper
SOURCE-WORK-ID:

288250

Contributors: Umair Mohammad; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

A Easy to Use Generalized Template to Support Development of GPU Algorithms

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250388

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

Biomedical IoT: Enabling Technologies, Architectural Elements, Challenges, and Future Directions

IEEE Access
2022 | Journal article
SOURCE-WORK-ID:

232446

Part of ISSN: 2169-3536
WOSUID:

WOS:000773233700001

Contributors: Mohammed Aledhari; Rehma Razzak; Basheer Qolomany; Ala Al-Fuqaha; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Computational CPU-GPU Template for Pre-processing of Floating-Point MS Data

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250387

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

Existing HPC Methods and the Communication Lower Bounds for Distributed-Memory Computations for Mass Spectrometry-Based Omics Data

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250386

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

Fast Spectral Pre-processing for Big MS Data

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250389

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

G-MSR: A GPU-Based Dimensionality Reduction Algorithm

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250393

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

High-Performance Computing Strategy Using Distributed-Memory Supercomputers

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250391

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

Introduction to Mass Spectrometry Data

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250392

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

Machine-Learning and the Future of HPC for MS-Based Omics

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250385

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

Need for High-Performance Computing for MS-Based Omics Data Analysis

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250390

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb
Source: check_circle
Florida International University - Symplectic Elements

Re-configurable Hardware for Computational Proteomics

Computational Biology
2022 | Book chapter
SOURCE-WORK-ID:

250394

Part of ISSN: 1568-2684
Part of ISBN: 9783031019593
Contributors: Fahad Saeed; Muhammad Haseeb; Sumesh Kumar
Source: check_circle
Florida International University - Symplectic Elements

SPERTL: Epileptic Seizure Prediction using EEG with ResNets and Transfer Learning

2022 IEEE-EMBS INTERNATIONAL CONFERENCE ON BIOMEDICAL AND HEALTH INFORMATICS (BHI) JOINTLY ORGANISED WITH THE IEEE-EMBS INTERNATIONAL CONFERENCE ON WEARABLE AND IMPLANTABLE BODY SENSOR NETWORKS (BSN'22)
2022 | Conference paper
SOURCE-WORK-ID:

252437

WOSUID:

WOS:000895865900005

Contributors: Umair Mohammad; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Molecular level characterization of DOM along a freshwater-to-estuarine coastal gradient in the Florida Everglades

Aquatic Sciences
2022-10 | Journal article
SOURCE-WORK-ID:

250927

Part of ISSN: 1015-1621
WOSUID:

WOS:000857794800001

Contributors: Dennys Leyva; Rudolf Jaffe; Jessica Courson; J.S. Kominoski; Muhammad Usman Tariq; Fahad Saeed; Francisco Fernandez-Lima
Source: check_circle
Florida International University - Symplectic Elements

Fahad Saeed, and Fahad Almuqhim, “Systems And Methods For Diagnosing Autism Spectrum Disorder Using fMRI Data“, U.S. Patent #11379981 B1

U.S. Patent #11379981 B1
2022-07-05 | Patent
Contributors: Fahad Saeed
Source: Self-asserted source
Fahad Saeed

Fahad Saeed, and Muhammad Haseeb, “Systems and methods for peptide identification“, U.S. Patent #11,309,061 B1

U.S. Patent #11,309,061 B1
2022-04-19 | Patent
Contributors: Fahad Saeed
Source: Self-asserted source
Fahad Saeed

Communication lower-bounds for distributed-memory computations for mass spectrometry based omics data

Journal of Parallel and Distributed Computing
2022-03 | Journal article
SOURCE-WORK-ID:

208261

Part of ISSN: 0743-7315
WOSUID:

WOS:000744258500003

Contributors: Fahad Saeed; Muhammad Haseeb; Sitharama S. Iyengar
Source: check_circle
Florida International University - Symplectic Elements

Fahad Saeed, and Muhammad Usman Tariq. "Systems and methods for measuring similarity between mass spectra and peptides." U.S. Patent # 11,251,031

U.S. Patent # 11,251,031
2022-02-15 | Patent
Contributors: Fahad Saeed
Source: Self-asserted source
Fahad Saeed

Unsupervised Structural Classification of Dissolved Organic Matter Based on Fragmentation Pathways

Environmental Science and Technology
2022-01-18 | Journal article
SOURCE-WORK-ID:

220308

Part of ISSN: 0013-936X
WOSUID:

WOS:000741110700001

Contributors: Dennys Leyva; Muhammad Usman Tariq; Rudolf Jaffe; Fahad Saeed; Francisco Fernandez Lima
Source: check_circle
Florida International University - Symplectic Elements

Classification of Autism Spectrum Disorder Using rs-fMRI data and Graph Convolutional Networks

Proceedings - 2022 IEEE International Conference on Big Data, Big Data 2022
2022-01-01 | Conference paper
SOURCE-WORK-ID:

254986

Part of ISSN: 2639-1589
Contributors: T Yang; M A Al-Duailij; S Bozdag; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

HiCOPS: High Performance Computing Framework for Tera-Scale Database Search of Mass Spectrometry based Omics Data

arXiv preprint arXiv:2102.02286
2021 | Journal article
Source: Self-asserted source
Fahad Saeed

Machine Learning methods for diagnosing Autism Spectrum Disorder and Attention-deficit/Hyperactivity Disorder using functional and structural MRI: A Survey

Frontiers in Neuroinformatics
2021 | Journal article
Source: Self-asserted source
Fahad Saeed

Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey

IEEE Access
2021 | Journal article
SOURCE-WORK-ID:

176832

Part of ISSN: 2169-3536
WOSUID:

WOS:000608198100001

Contributors: Muhammad Usman Tariq; Muhammad Haseeb; Mohammed Aledhari; Rehma Razzak; Reza M Parizi; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey

IEEE Access
2021 | Journal article
Source: Self-asserted source
Fahad Saeed

TurboBC: A Memory Efficient and Scalable GPU Based Betweenness Centrality Algorithm in the Language of Linear Algebra

Proceedings of the International Conference on Parallel Processing Workshops
2021 | Conference paper
SOURCE-WORK-ID:

203187

Part of ISSN: 1530-2016
WOSUID:

WOS:000747651900032

Contributors: Oswaldo Artiles; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

TurboBFS: GPU Based Breadth-First Search (BFS) Algorithms in the Language of Linear Algebra

2021 IEEE INTERNATIONAL PARALLEL AND DISTRIBUTED PROCESSING SYMPOSIUM WORKSHOPS (IPDPSW)
2021 | Conference paper
SOURCE-WORK-ID:

194058

Part of ISSN: 2164-7062
WOSUID:

WOS:000689576200066

Contributors: Oswaldo Artiles; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions

PLoS ONE
2021-10-29 | Journal article
SOURCE-WORK-ID:

207373

Part of ISSN: 1932-6203
WOSUID:

WOS:000755042500051

Contributors: Muhammad Usman Tariq; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

High performance computing framework for tera-scale database search of mass spectrometry data

Nature Computational Science
2021-08 | Journal article
SOURCE-WORK-ID:

195468

Part of ISSN: 2662-8457
WOSUID:

WOS:000888560300011

Contributors: Muhammad Haseeb; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements

Real-time peptide identification from high-throughput mass-spectrometry data

2021-08 | Conference paper
SOURCE-WORK-ID:

214401

Contributors: Sumesh Kumar; Fahad Saeed
Source: check_circle
Florida International University - Symplectic Elements
Items per page:
Page 1 of 5

Peer review (7 reviews for 5 publications/grants)

Review activity for BMC bioinformatics (1)
Review activity for Computers in biology and medicine. (3)
Review activity for Nature computational science. (1)
Review activity for PloS one. (1)
Review activity for Translational psychiatry. (1)