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Masarykova univerzita: Brno, CZ

Researcher (National Centre for Biomolecular Research)
Employment
Source: Self-asserted source
Petr Kulhanek

Works (45)

Bending of Canonical and G/T Mismatched DNAs

Journal of Chemical Information and Modeling
2021 | Journal article
Contributors: Bouchal, Tomas; Durnik, Ivo; Kulhanek, Petr
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Modes of Micromolar Host-Guest Binding of beta-Cyclodextrin Complexes Revealed by NMR Spectroscopy in Salt Water

The Journal of Organic Chemistry
2021 | Journal article
Contributors: Tomecek, Josef; Cablova, Andrea; Hromadkova, Aneta; Novotny, Jan; Marek, Radek; Durnik, Ivo; Kulhanek, Petr; Pruckova, Zdenka; Rouchal, Michal; Dastychova, Lenka et al.
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A Photochemical/Thermal Switch Based on 4,4 '-Bis(benzimidazolio)stilbene: Synthesis and Supramolecular Properties

ChemPhysChem
2020 | Journal article
Contributors: Kulkarni, Shantanu Ganesh; Jelinkova, Kristyna; Necas, Marek; Pruckova, Zdenka; Rouchal, Michal; Dastychova, Lenka; Kulhanek, Petr; Vicha, Robert
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Conformationally mobile acyclic cucurbit[n]uril-type receptors derived from an S-shaped methylene bridged glycoluril pentamer

Supramolecular Chemistry
2020 | Journal article
Contributors: Brady, Kimberly G.; Gilberg, Laura; Sigwalt, David; Bistany-Riebman, Joshua; Murkli, Steven; Klemm, Jared; Kulhanek, Petr; Sindelar, Vladimir; Isaacs, Lyle
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Importance of base-pair opening for mismatch recognition

Nucleic Acids Research
2020 | Journal article
Contributors: Bouchal, Tomas; Durnik, Ivo; Illik, Viktor; Reblova, Kamila; Kulhanek, Petr
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Bending of DNA duplexes with mutation motifs

DNA Research
2019 | Journal article
Contributors: Ruzicka, Michal; Soucek, Remysl; Kulhanek, Petr; Radova, Lenka; Fajkusova, Lenka; Reblova, Kamila
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Behavior of BsoBI endonuclease in the presence and absence of DNA

Journal of Molecular Modeling
2018 | Journal article
Contributors: Stepan, Jakub; Kabelka, Ivo; Koca, Jaroslav; Kulhanek, Petr
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Bambusuril as a One-Electron Donor for Photoinduced Electron Transfer to Methyl Viologen in Mixed Crystals

Journal of the American Chemical Society
2017 | Journal article
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DNA mutation motifs in the genes associated with inherited diseases

Plos One
2017 | Journal article
Contributors: Ruzicka, Michal; Kulhanek, Petr; Radova, Lenka; Cechova, Andrea; Spackova, Nada; Fajkusova, Lenka; Reblova, Kamila
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A Cucurbituril Derivative That Exhibits Cation-Modulated Self Assembly

The Journal of Organic Chemistry
2016 | Journal article
Contributors: Ustrnul, Lukas; Babiak, Michal; Kulhanek, Petr; Sindelar, Vladimir
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Cooperative Binding of Cucurbit[n]urils and beta-Cyclodextrin to Heteroditopic Imidazolium-Based Guests

The Journal of Organic Chemistry
2016 | Journal article
Contributors: Branna, Petra; Cernochova, Jarmila; Rouchal, Michal; Kulhanek, Petr; Babinsky, Martin; Marek, Radek; Necas, Marek; Kuritka, Ivo; Vicha, Robert
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Sequence-dependent separation of trinucleotides by ion-interaction reversed-phase liquid chromatography A structure-retention study assisted by soft-modelling and molecular dynamics

Journal of Chromatography A
2016 | Journal article
Contributors: Mikulasek, Kamil; Jaron, Kamil S.; Kulhanek, Petr; Bittova, Miroslava; Havlis, Jan
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The structure and dynamics of chitin nanofibrils in an aqueous environment revealed by molecular dynamics simulations

RSC Advances
2016 | Journal article
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Computational study of missense mutations in phenylalanine hydroxylase

Journal of Molecular Modeling
2015 | Journal article
Contributors: Reblova, Kamila; Kulhanek, Petr; Fajkusova, Lenka
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Exploring Reaction Pathways for O-GlcNAc Transferase Catalysis. A String Method Study

The Journal of Physical Chemistry B
2015 | Journal article
Contributors: Kumari, Manju; Kozmon, Stanislav; Kulhanek, Petr; Stepan, Jakub; Tvaroska, Igor; Koca, Jaroslav
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Pressocucurbit[5]uril

Organic Letters
2015 | Journal article
Contributors: Ustrnul, Lukas; Kulhanek, Petr; Lizal, Tomas; Sindelar, Vladimir
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Tailoring the properties of quadruplex nucleobases for biological and nanomaterial applications

Physical Chemistry Chemical Physics
2014 | Journal article
Contributors: Novotny, Jan; Yurenko, Yevgen P.; Kulhanek, Petr; Marek, Radek
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<sup>129</sup> Xe NMR chemical shift in Xe@C <sub>60</sub> calculated at experimental conditions: Essential role of the relativity, dynamics, and explicit solvent

Journal of Computational Chemistry
2013 | Journal article
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Biocompatible Xanthine-Quadruplex Scaffold for Ion-Transporting DNA Channels

Journal of Physical Chemistry Letters
2012 | Journal article
Contributors: Novotny, Jan; Kulhanek, Petr; Marek, Radek
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Determination of Intrinsic Binding Modes by Mass Spectrometry: Gas-Phase Behavior of Adamantylated Bisimidazolium Guests Complexed to Cucurbiturils

Chemistry - A European Journal
2012 | Journal article
Contributors: Cernochova, Jarmila; Branna, Petra; Rouchal, Michal; Kulhanek, Petr; Kuritka, Ivo; Vicha, Robert
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Influence of stereochemistry on proton transfer in protonated tripeptide models

Journal of Molecular Modeling
2012 | Journal article
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Understanding the Sequence Preference of Recurrent RNA Building Blocks Using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform

Journal of Chemical Theory and Computation
2012 | Journal article
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Applicability of Free Energy Calculations Using High-Throughput Grid Approach

DATA DRIVEN E-SCIENCE, ISGC
2011 | Journal article
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Redistribution of electron density in pyridinium and pyrazinium guests induced by complexation with cucurbit[6]uril

New Journal of Chemistry
2011 | Journal article
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Simulations of Xe-129 NMR chemical shift of atomic xenon dissolved in liquid benzene

Theoretica Chimica Acta
2011 | Journal article
Contributors: Standara, Stanislav; Kulhanek, Petr; Marek, Radek; Hornicek, Jan; Bour, Petr; Straka, Michal
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An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5 '-UAA/5 '-GAN Internal Loops Studied by Molecular Dynamics Methods

Journal of Chemical Theory and Computation
2010 | Journal article
Contributors: Reblova, Kamila; Strelcova, Zora; Kulhanek, Petr; Besseova, Ivana; Mathews, David H.; Van Nostrand, Keith; Yildirim, Ilyas; Turner, Douglas H.; Sponer, Jiri
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Catch-All Virtual Organizations - Solution for Heterogeneous and Disperse Grid Users Communities

MANAGED GRIDS AND CLOUD SYSTEMS IN THE ASIA-PACIFIC RESEARCH COMMUNITY
2010 | Journal article
Contributors: Kmunicek, Jan; Kouril, Daniel; Yen, Eric; Matyska, Ludek; Strelcova, Zora; Kulhanek, Petr; Koca, Jaroslav
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Inclusion of Carboxyl Function Inside of Cucurbiturils and its Use in Molecular Switches

Chemistry - An Asian Journal
2010 | Journal article
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Electron Density Shift in Imidazolium Derivatives upon Complexation with Cucurbit[6]uril

Chemistry - A European Journal
2009 | Journal article
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Evaluating Boundary Dependent Errors in QM/MM Simulations

The Journal of Physical Chemistry B
2009 | Journal article
Contributors: Solt, Ivan; Kulhanek, Petr; Simon, Istvan; Winfield, Steven; Payne, Mike C.; Csanyi, Gabor; Fuxreiter, Monika
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Pathways and Mechanisms for Product Release in the Engineered Haloalkane Dehalogenases Explored Using Classical and Random Acceleration Molecular Dynamics Simulations

Journal of Molecular Biology
2009 | Journal article
Contributors: Klvana, Martin; Pavlova, Martina; Koudelakova, Tana; Chaloupkova, Radka; Dvorak, Pavel; Prokop, Zbynek; Stsiapanava, Alena; Kuty, Michal; Kuta-Smatanova, Ivana; Dohnalek, Jan et al.
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The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions

The Journal of Physical Chemistry B
2009 | Journal article
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Mechanism of hydrogen-bond array isomerization in tetrahydroxycalix[4]arene and tetrahydroxythiacalix[4]arene

The Journal of Physical Chemistry A
2008 | Journal article
Contributors: Jiří Matoušek; Michal Čajan; Petr Kulhánek; Jaroslav Koča
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Molecular dynamics study of Pseudomonas aeruginosa lectin-II complexed with monosaccharides

Proteins: Structure, Function, and Bioinformatics
2008 | Journal article
Contributors: Mishra, Navnit Kumar; Kulhanek, Petr; Snajdrova, Lenka; Petrek, Martin; Imberty, Anne; Koca, Jaroslav
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Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics

Biophysical Journal
2007 | Journal article
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Probing the Two-Metal Ion Mechanism in the Restriction Endonuclease BamHI <sup>†</sup>

Biochemistry
2007 | Journal article
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Effect of solvation on pinched cone-pinched cone interconversion of tetraethoxycalix[4]arene and tetraethoxythiacalix[4]arene

The Journal of Physical Chemistry A
2006 | Journal article
Contributors: Jiří Matoušek; Petr Kulhánek; Michal Čajan; Jaroslav Koča
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Non-Watson-Crick base pairing in RNA. Quantum chemical analysis of the cis Watson-Crick/sugar edge base pair family

The Journal of Physical Chemistry A
2005 | Journal article
Contributors: Sponer, JE; Spackova, N; Kulhanek, P; Leszczynski, J; Sponer, J
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Molecular dynamics simulations of glycosyltransferase LgtC

Carbohydrate Research
2004 | Journal article
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Quantum-Chemical Insight Into Mechanism of Combined Intra-Intermolecular Cycloaddition

Collection of Czechoslovak Chemical Communications
2004 | Journal article
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A Novel Mechanism of Proton Transfer in Protonated Peptides

Journal of the American Chemical Society
2003 | Journal article
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Mechanism of proton transfer in short protonated oligopeptides. 1. N-methylacetamide and N-2-acetyl-N-1-methylglycinamide

The Journal of Physical Chemistry A
2003 | Journal article
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Temperature dependent photochemical cleavage of 2,5-dimethylphenacyl esters

Molecular Diversity
2003 | Journal article
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New fused heterocycles by combined intra-intermolecular criss-cross cycloaddition of nonsymmetrical azines

Tetrahedron Letters
2002 | Journal article
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Temperature-sensitive photochemical aromatic substitution on 4-nitroanisole

Photochemical & Photobiological Sciences
2002 | Journal article
Contributors: Klan, Petr; Ruzicka, Radovan; Heger, Dominik; Literak, Jaromir; Kulhanek, Petr; Loupy, Andre
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Peer review (4 reviews for 3 publications/grants)

Review activity for Journal of chemical information and modeling. (2)
Review activity for Journal of molecular modeling. (1)
Review activity for The journal of physical chemistry letters. (1)