Personal information

Activities

Employment (3)

Genentech Inc.: SOUTH SAN FRANCISCO, CALIFORNIA, US

2023-02-27 to present | Principal Scientist (Machine Learning Drug Discovery)
Employment
Source: Self-asserted source
Sai Pooja Mahajan

Johns Hopkins University: Baltimore, Maryland, US

2018-02-23 to 2023-02-22 | Postdoctoral researcher (Chemical and Biomolecular Engineering)
Employment
Source: Self-asserted source
Sai Pooja Mahajan

Intel Corporation: Portland, OR, US

2015-11-30 to 2018-01-25 | Senior Imaging Scientist (Computational Lithography Technology)
Employment
Source: Self-asserted source
Sai Pooja Mahajan

Education and qualifications (3)

Cornell University: Ithaca, New York, US

Research Assistant (Chemical and Biomolecular Engineering)
Qualification
Source: Self-asserted source
Sai Pooja Mahajan

Cornell University: Ithaca, New York, US

2009-08 to 2015-10 | PhD (Chemical and Biomolecular Engineering)
Education
Source: Self-asserted source
Sai Pooja Mahajan

Indian Institute of Technology : Bombay, Maharashtra, IN

2003-08 to 2008-07 | B. Tech (Chemical Engineering)
Education
Source: Self-asserted source
Sai Pooja Mahajan

Professional activities (2)

American Institute of Chemical Engineers: New York, NY, US

Membership
Source: Self-asserted source
Sai Pooja Mahajan

Johns Hopkins University: Baltimore, Maryland, US

2021-05-22 | Mark O. Robbins "Future Faculty" prize in high-performance computing 2021 (Advanced Research Computing at Hopkins (ARCH))
Distinction
Source: Self-asserted source
Sai Pooja Mahajan

Works (12)

Discovery of a single-subunit oligosaccharyltransferase that enables glycosylation of full-length IgG antibodies inEscherichia coli

2024-08-12 | Preprint
Contributors: Belen Sotomayor; Thomas C. Donahue; Sai Pooja Mahajan; May N. Taw; Sophia W. Hulbert; Erik J. Bidstrup; D. Natasha Owitipana; Alexandra Pang; Xu Yang; Souvik Ghosal et al.
Source: check_circle
Crossref

Contextual protein and antibody encodings from equivariant graph transformers

2023-07-17 | Preprint
Contributors: Sai Pooja Mahajan; Jeffrey A. Ruffolo; Jeffrey J. Gray
Source: check_circle
Crossref

Hallucinating structure-conditioned antibody libraries for target-specific binders

2022-06-06 | Preprint
Contributors: Sai Pooja Mahajan; Jeffrey A. Ruffolo; Rahel Frick; Jeffrey J. Gray
Source: check_circle
Crossref

Induced fit with replica exchange improves protein complex structure prediction

PLOS Computational Biology
2022-06-03 | Journal article
Contributors: Ameya Harmalkar; Anna R Panchenko; Sai Pooja Mahajan; Jeffrey J. Gray
Source: check_circle
Crossref

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

2022-04-21 | Preprint
Contributors: Jeffrey A. Ruffolo; Lee-Shin Chu; Sai Pooja Mahajan; Jeffrey J. Gray
Source: check_circle
Crossref

Structural Basis for Peptide Substrate Specificities of Glycosyltransferase GalNAc-T2

ACS Catalysis
2021 | Journal article
EID:

2-s2.0-85102116618

Part of ISSN: 21555435
Contributors: Mahajan, S.P.; Srinivasan, Y.; Labonte, J.W.; Delisa, M.P.; Gray, J.J.
Source: Self-asserted source
Sai Pooja Mahajan via Scopus - Elsevier
grade
Preferred source (of 2)‎

Deep Learning in Protein Structural Modeling and Design

Patterns
2020 | Journal article
EID:

2-s2.0-85096850058

Part of ISSN: 26663899
Contributors: Gao, W.; Mahajan, S.P.; Sulam, J.; Gray, J.J.
Source: Self-asserted source
Sai Pooja Mahajan via Scopus - Elsevier

Geometric potentials from deep learning improve prediction of CDR H3 loop structures

Bioinformatics
2020 | Journal article
EID:

2-s2.0-85087913556

Part of ISSN: 14602059 13674803
Contributors: Ruffolo, J.A.; Guerra, C.; Mahajan, S.P.; Sulam, J.; Gray, J.J.
Source: Self-asserted source
Sai Pooja Mahajan via Scopus - Elsevier

Structural basis for peptide substrate specificities of glycosyltransferase GalNAc-T2

2020-06-27 | Other
Contributors: Sai Pooja Mahajan; Yashes Srinivasan; Jason W. Labonte; Matthew P. DeLisa; Jeffrey J. Gray
Source: check_circle
Crossref

The structure of the colorectal cancer-associated enzyme GalNAc-T12 reveals how nonconserved residues dictate its function

Proceedings of the National Academy of Sciences of the United States of America
2019 | Journal article
EID:

2-s2.0-85073051611

Part of ISSN: 10916490 00278424
Contributors: Fernandez, A.J.; Daniel, E.J.P.; Mahajan, S.P.; Gray, J.J.; Gerken, T.A.; Tabak, L.A.; Samara, N.L.
Source: Self-asserted source
Sai Pooja Mahajan via Scopus - Elsevier

Computational affinity maturation of camelid single-domain intrabodies against the nonamyloid component of alpha-synuclein

Scientific Reports
2018-12 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Sai Pooja Mahajan

Tilting the Balance between Canonical and Noncanonical Conformations for the H1 Hypervariable Loop of a Llama VHH through Point Mutations

The Journal of Physical Chemistry B
2013-01-10 | Journal article
Part of ISSN: 1520-6106
Part of ISSN: 1520-5207
Source: Self-asserted source
Sai Pooja Mahajan

Peer review (3 reviews for 3 publications/grants)

Review activity for Nature communications (1)
Review activity for Nature computational science. (1)
Review activity for Nature machine intelligence. (1)