Personal information

CRISPR, perturbation biology, scRNA-seq, RNA dynamics, single-cell
Germany

Activities

Employment (4)

European Molecular Biology Laboratory: Heidelberg, DE

2023-09-15 to present | Postdoctoral Fellow (Huber Lab)
Employment
Source: Self-asserted source
Stefan Peidli

Charité Universitätsmedizin Berlin: Berlin, Berlin, DE

2020-02-15 to 2023-09-14 | PhD Student (Pathology)
Employment
Source: Self-asserted source
Stefan Peidli

Harvard Medical School: Boston, MA, US

2022-05-01 to 2022-08-31 | Visiting PhD Student (Blavatnik Institute)
Employment
Source: Self-asserted source
Stefan Peidli

Helmholtz Zentrum München: Munich, Bavaria, DE

2018-10-01 to 2020-02-15 | student assistant (Institute of Computational Biology)
Employment
Source: Self-asserted source
Stefan Peidli

Education and qualifications (1)

Technical University of Munich: Munich, Bavaria, DE

2017 to 2019 | M.Sc. Mathematics
Education
Source: Self-asserted source
Stefan Peidli

Professional activities (1)

Humboldt-Universität zu Berlin: Berlin, DE

2020-03-01 to 2023-09-14 | PhD Student (Institute for Theoretical Biology)
Membership
Source: Self-asserted source
Stefan Peidli

Works (10)

Single-cell-resolved interspecies comparison identifies a shared inflammatory axis and a dominant neutrophil-endothelial program in severe COVID-19.

2025-03-08 | Other
OTHER-ID:

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Contributors: Peidli S; Nouailles G; Wyler E; Adler MJ; Kunder S; Voß A; Kazmierski J; Pott F; Pennitz P; Postmus D et al.
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Converis
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Preferred source (of 2)‎

High‐confidence calling of normal epithelial cells allows identification of a novel stem‐like cell state in the colorectal cancer microenvironment

International Journal of Cancer
2024-11 | Journal article
Contributors: Tzu‐Ting Wei; Eric Blanc; Stefan Peidli; Philip Bischoff; Alexandra Trinks; David Horst; Christine Sers; Nils Blüthgen; Dieter Beule; Markus Morkel et al.
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Crossref
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Preferred source (of 3)‎

The decomposition of perturbation modeling

Nature Computational Science
2024-10-14 | Journal article
Contributors: Stefan Peidli
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Pertpy: an end-to-end framework for perturbation analysis

2024-08-07 | Preprint
Contributors: Lukas Heumos; Yuge Ji; Lilly May; Tessa Green; Xinyue Zhang; Xichen Wu; Johannes Ostner; Stefan Peidli; Antonia Schumacher; Karin Hrovatin et al.
Source: check_circle
Crossref

scPerturb: harmonized single-cell perturbation data

Nature Methods
2024-03 | Journal article
Contributors: Stefan Peidli; Tessa D. Green; Ciyue Shen; Torsten Gross; Joseph Min; Samuele Garda; Bo Yuan; Linus J. Schumacher; Jake P. Taylor-King; Debora S. Marks et al.
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Crossref
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Optimal distance metrics for single-cell RNA-seq populations

2023-12-27 | Preprint
Contributors: Yuge Ji; Tessa D. Green; Stefan Peidli; Mojtaba Bahrami; Meiqi Liu; Luke Zappia; Karin Hrovatin; Chris Sander; Fabian J. Theis
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Crossref

Live-attenuated vaccine sCPD9 elicits superior mucosal and systemic immunity to SARS-CoV-2 variants in hamsters

Nature Microbiology
2023-04-03 | Journal article
Contributors: Geraldine Nouailles; Julia M. Adler; Peter Pennitz; Stefan Peidli; Luiz Gustavo Teixeira Alves; Morris Baumgardt; Judith Bushe; Anne Voss; Alina Langenhagen; Christine Langner et al.
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Crossref
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Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics.

Molecular Therapy
2022 | Journal article
Part of ISSN: 1525-0024
Source: Self-asserted source
Stefan Peidli
grade
Preferred source (of 4)‎

Mitogen‐activated protein kinase activity drives cell trajectories in colorectal cancer.

2021-07-10 | Journal article
OTHER-ID:

3e36908b-48a4-4430-b9f8-f79ebe9cdb97

WOSUID:

000686074000001

Contributors: Uhlitz F; Bischoff P; Peidli S; Sieber A; Trinks A; Lüthen M; Obermayer B; Blanc E; Ruchiy Y; Sell T et al.
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Converis
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Generalizing RNA velocity to transient cell states through dynamical modeling.

2020-01-01 | Journal article
OTHER-ID:

99e1de3c-bd65-4ba0-8d68-9151b5a343bd

WOSUID:

000555378400001

Contributors: Bergen V; Lange M; Peidli S; Wolf FA; Theis FJ
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Converis
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