Personal information

Emails & domains

Verified email addresses

Verified email domains

Other IDs

Scopus Author ID: 22937529600

Activities

Collapse all

Employment (4)

Ariel University: Ariel, IL

(Department of Computer Sciences)
Employment
Source: check_circle
Ariel University - TRP

Ariel University: Ariel, IL

2020-10-01 to present | Assistant Professor (Computer Science)
Employment
Source: Self-asserted source
Assaf Hoogi

Weizmann Institute of Science: Rehovot, IL

2018-12-01 to 2020-08-01 | Senior Researcher (Computer Science and Applied mathematics)
Employment
Source: Self-asserted source
Assaf Hoogi

Stanford University: Stanford, CA, US

2016-10-01 to 2018-10-01 | Senior Researcher (Departments of Biomedical Data Science)
Employment
Source: Self-asserted source
Assaf Hoogi

Education and qualifications (2)

Stanford University: Stanford, CA, US

2013-03-28 to 2016-10-01 | Postdoc (Departments of Biomedical Data Science, Radiology, and Medicine)
Education
Source: Self-asserted source
Assaf Hoogi

Technion Israel Institute of Technology: Haifa, Haifa, IL

2008-07-01 to 2013-03-01 | PhD (Biomedical engineering)
Education
Source: Self-asserted source
Assaf Hoogi

Funding (2)

Joint text-image framework for better prediction of future lung cancer, optimizing monitoring of high and low risks patient

2022-01 to 2022-12 | Grant
Israel Government (Jerusalem, IL)
Source: Self-asserted source
Assaf Hoogi

Self-supervised image-text embedding to predict the risk for future cancer

2021-04 to present | Grant
Nvidia (CA, CA, US)
Source: Self-asserted source
Assaf Hoogi

Works (46)

Leveraging the Triple Exponential Moving Average for Fast-Adaptive Moment Estimation

ArXiv
2023 | Journal article
WOSUID: PPRN:72842141
Contributors: Peleg, Roi; Weiss, Roi; Hoogi, Assaf
Source: check_circle
Web of Science Researcher Profile Sync

Self-attention Capsule Network for Tissue Classification in Case of Challenging Medical Image Statistics

2023 | Book chapter
DOI: 10.1007/978-3-031-25066-8_10
Contributors: Assaf Hoogi; Brian Wilcox; Yachee Gupta; Daniel Rubin
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Unsupervised Iterative U-Net with an Internal Guidance Layer for Vertebrae Contrast Enhancement in Chest X-Ray Images

ArXiv
2023 | Journal article
WOSUID: PPRN:73054327
Contributors: Eidlin, Ella; Hoogi, Assaf; Netanyahu, Nathan S
Source: check_circle
Web of Science Researcher Profile Sync

Self-supervised Natural Image Reconstruction and Large-scale Semantic Classification from Brain Activity

NeuroImage
2022-07 | Journal article
DOI: 10.1016/j.neuroimage.2022.119121
Part of ISSN: 1053-8119
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Biomedical Imaging Informatics

Biomedical Informatics
2021 | Book chapter
DOI: 10.1007/978-3-030-58721-5_10
Part of ISBN: 9783030587208
Part of ISBN: 9783030587215
Source: Self-asserted source
Assaf Hoogi

Deep Active Lesion Segmentation

ArXiv
2020 | Journal article
WOSUID: PPRN:13117928
Contributors: Hatamizadeh, Ali; Hoogi, Assaf; Sengupta, Debleena; Lu, Wuyue; Wilcox, Brian; Rubin, Daniel; Terzopoulos, Demetri
Source: check_circle
Web of Science Researcher Profile Sync

Spatial Characterization of Tumor Perfusion Properties from 3D DCE-US Perfusion Maps are Early Predictors of Cancer Treatment Response

Scientific Reports
2020-12 | Journal article
DOI: 10.1038/s41598-020-63810-1
Part of ISSN: 2045-2322
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Natural Language Generation Model for Mammography Reports Simulation

IEEE Journal of Biomedical and Health Informatics
2020-09 | Journal article
DOI: 10.1109/JBHI.2020.2980118
Contributors: Assaf Hoogi; Arjun Mishra; Francisco Gimenez; Jeffrey Dong; Daniel Rubin
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Self-Supervised Natural Image Reconstruction and Rich Semantic Classification from Brain Activity

[]
2020-09-08 | Preprint
DOI: 10.1101/2020.09.06.284794
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 4)‎

Automated Quantitative Imaging Measurements of Disease Severity in Patients with Nonthrombotic Iliac Vein Compression

Journal of Vascular and Interventional Radiology
2020-02 | Journal article
DOI: 10.1016/j.jvir.2019.04.034
Part of ISSN: 1051-0443
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 4)‎

DALS: Deep active lesion segmentation

arXiv
2019 | Other
EID:

2-s2.0-85093386827

Part of ISSN: 23318422
Contributors: Hatamizadeh, A.; Hoogi, A.; Sengupta, D.; Lu, W.; Wilcox, B.; Rubin, D.; Terzopoulos, D.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier

Deep Active Lesion Segmentation

bioRxiv
2019 | Other
DOI: 10.1101/794529
EID:

2-s2.0-85095509253

Part of ISSN: 26928205
Contributors: Hatamizadeh, A.; Hoogi, A.; Sengupta, D.; Lu, W.; Wilcox, B.; Rubin, D.; Terzopoulos, D.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier

Deep Active Lesion Segmentation

Machine Learning in Medical Imaging
2019 | Conference paper
DOI: 10.1007/978-3-030-32692-0_12
Part of ISBN: 9783030326913
Part of ISBN: 9783030326920
Part of ISSN: 0302-9743
Part of ISSN: 1611-3349
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

From voxels to pixels and back: Self-supervision in natural-image reconstruction from fMRI

arXiv
2019 | Other
EID:

2-s2.0-85094250620

Part of ISSN: 23318422
Contributors: Beliy, R.; Gaziv, G.; Hoogi, A.; Strappini, F.; Golan, T.; Irani, M.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier

From voxels to pixels and back: Self-supervision in natural-image reconstruction from fMRI

Advances in Neural Information Processing Systems (NeurIPS Proceedings)
2019 | Journal article
WOSUID: WOS:000534424306051
Contributors: Beliy, Roman; Gaziv, Guy; Hoogi, Assaf; Strappini, Francesca; Golan, Tal; Irani, Michal
Source: check_circle
Web of Science Researcher Profile Sync

From voxels to pixels and back: Self-supervision in natural-image reconstruction from fMRI

ArXiv
2019 | Journal article
WOSUID: PPRN:11898593
Contributors: Beliy, Roman; Gaziv, Guy; Hoogi, Assaf; Strappini, Francesca; Golan, Tal; Irani, Michal
Source: check_circle
Web of Science Researcher Profile Sync

From voxels to pixels and back: Self-supervision in natural-image reconstruction from fMRI

Advances in Neural Information Processing Systems
2019 | Conference paper
EID:

2-s2.0-85084091340

Part of ISSN: 10495258
Contributors: Beliy, R.; Gaziv, G.; Hoogi, A.; Strappini, F.; Golan, T.; Irani, M.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier

From voxels to pixels and back: Self-supervision in natural-image reconstruction from fMRI

NeurIPS
2019 | Conference paper
Source: Self-asserted source
Assaf Hoogi

Self-attention capsule networks for object classification

2019 | Preprint
Source: Self-asserted source
Assaf Hoogi

Self-attention capsule networks for object classification

arXiv
2019 | Other
EID:

2-s2.0-85093807063

Part of ISSN: 23318422
Contributors: Hoogi, A.; Wilcox, B.; Gupta, Y.; Rubin, D.L.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier

TVAE: Triplet-Based Variational Autoencoder using Metric Learning

ArXiv
2018 | Journal article
WOSUID: PPRN:22065653
Contributors: Ishfaq, Haque; Hoogi, Assaf; Rubin, Daniel
Source: check_circle
Web of Science Researcher Profile Sync

TVAE: TRIPLET-BASED VARIATIONAL AUTOENCODER USING METRIC LEARNING

arXiv
2018 | Other
EID:

2-s2.0-85094997407

Part of ISSN: 23318422
Contributors: Ishfaq, H.; Hoogi, A.; Rubin, D.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier

Automated dendritic spine detection using convolutional neural networks on maximum intensity projected microscopic volumes

Journal of Neuroscience Methods
2018-11 | Journal article
DOI: 10.1016/j.jneumeth.2018.08.019
Part of ISSN: 0165-0270
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

A fully-automated pipeline for detection and segmentation of liver lesions and pathological lymph nodes

arXiv
2017 | Other
EID:

2-s2.0-85092865946

Part of ISSN: 23318422
Contributors: Hoogi, A.; Lambert, J.W.; Zheng, Y.; Comaniciu, D.; Rubin, D.L.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier

A Fully-Automated Pipeline for Detection and Segmentation of Liver Lesions and Pathological Lymph Nodes

ArXiv
2017 | Journal article
WOSUID: PPRN:12360607
Contributors: Hoogi, Assaf; W. Lambert, John; Zheng, Yefeng; Comaniciu, Dorin; L. Rubin, Daniel
Source: check_circle
Web of Science Researcher Profile Sync

A curated mammography data set for use in computer-aided detection and diagnosis research

Scientific Data
2017-12 | Journal article
DOI: 10.1038/sdata.2017.177
Part of ISSN: 2052-4463
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Volumetric contrast-enhanced ultrasound parametric maps and texture feature extraction for tissue treatment response characterization

2017 IEEE International Ultrasonics Symposium (IUS)
2017-09 | Conference paper
DOI: 10.1109/ultsym.2017.8091701
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 2)‎

Deep Learning for Brain MRI Segmentation: State of the Art and Future Directions

Journal of Digital Imaging
2017-08 | Journal article
DOI: 10.1007/s10278-017-9983-4
Part of ISSN: 0897-1889
Part of ISSN: 1618-727X
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 4)‎

Adaptive local window for level set segmentation of CT and MRI liver lesions

Medical Image Analysis
2017-04 | Journal article
DOI: 10.1016/j.media.2017.01.002
Contributors: Assaf Hoogi; Christopher F. Beaulieu; Guilherme M. Cunha; Elhamy Heba; Claude B. Sirlin; Sandy Napel; Daniel L. Rubin
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Adaptive Estimation of Active Contour Parameters Using Convolutional Neural Networks and Texture Analysis

IEEE Transactions on Medical Imaging
2017-03 | Journal article
DOI: 10.1109/TMI.2016.2628084
Contributors: Assaf Hoogi; Arjun Subramaniam; Rishi Veerapaneni; Daniel L. Rubin
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Adaptive Local Window for Level Set Segmentation of CT and MRI Liver Lesions

ArXiv
2016 | Journal article
WOSUID: PPRN:14754786
Contributors: Hoogi, Assaf; F. Beaulieu, Christopher; M. Cunha, Guilherme; Heba, Elhamy; B. Sirlin, Claude; Napel, Sandy; L. Rubin, Daniel
Source: check_circle
Web of Science Researcher Profile Sync

Improved Patch-Based Automated Liver Lesion Classification by Separate Analysis of the Interior and Boundary Regions

IEEE Journal of Biomedical and Health Informatics
2016-11 | Journal article
DOI: 10.1109/jbhi.2015.2478255
Part of ISSN: 2168-2194
Part of ISSN: 2168-2208
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Automated classification of brain tumor type in whole-slide digital pathology images using local representative tiles

Medical Image Analysis
2016-05 | Journal article
DOI: 10.1016/j.media.2015.12.002
Part of ISSN: 1361-8415
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Weighted locality-constrained linear coding for lesion classification in CT images

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS
2015 | Conference paper
DOI: 10.1109/EMBC.2015.7319848
EID:

2-s2.0-84953237166

Part of ISSN: 1557170X
Contributors: Yuan, Y.; Hoogi, A.; Beaulieu, C.F.; Meng, M.Q.-H.; Rubin, D.L.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Quantitative Contrast-Enhanced Ultrasound of Intraplaque Neovascularization in Patients with Carotid Atherosclerosis

Ultraschall in der Medizin - European Journal of Ultrasound
2014-05-13 | Journal article
DOI: 10.1055/s-0034-1366410
Part of ISSN: 0172-4614
Part of ISSN: 1438-8782
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

New Quantification Methods for Carotid Intra-plaque Neovascularization Using Contrast-Enhanced Ultrasound

Ultrasound in Medicine & Biology
2014-01 | Journal article
DOI: 10.1016/j.ultrasmedbio.2013.09.010
Part of ISSN: 0301-5629
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Evaluation of a 3D technique for quantifying neovascularization within plaques imaged by contrast enhanced ultrasound

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS
2013 | Conference paper
DOI: 10.1109/EMBC.2013.6609703
EID:

2-s2.0-84886537593

Part of ISSN: 1557170X
Contributors: Hoogi, A.; Zurakhov, G.; Adam, D.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Quantification of targeted microbubbles in contrast enhanced ultrasound

IEEE International Ultrasonics Symposium, IUS
2013 | Conference paper
DOI: 10.1109/ULTSYM.2013.0465
EID:

2-s2.0-84894376088

Part of ISSN: 19485719 19485727
Contributors: Daeichin, V.; Akkus, Z.; Hoogi, A.; Bosch, J.G.; Needles, A.; Kooiman, K.; Skachkov, I.; Sluimer, J.; Janssen, B.; Daemen, M.J.A.P. et al.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Analysis of neovascularization of atherosclerotic carotid plaques in contrast enhanced ultrasound

IEEE International Ultrasonics Symposium, IUS
2012 | Conference paper
DOI: 10.1109/ULTSYM.2012.0229
EID:

2-s2.0-84882338089

Part of ISSN: 19485719 19485727
Contributors: Akkus, Z.; Hoogi, A.; Bosch, J.G.; Renaud, G.; Van Den Oord, S.C.H.; Ten Kate, G.L.; Schinkel, A.F.L.; Adam, D.; De Jong, N.; Van Der Steen, A.F.W.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Quantitative Analysis of Ultrasound Contrast Flow Behavior in Carotid Plaque Neovasculature

Ultrasound in Medicine & Biology
2012-12 | Journal article
DOI: 10.1016/j.ultrasmedbio.2012.08.002
Part of ISSN: 0301-5629
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Motion compensation method using dynamic programming for quantification of neovascularization in carotid atherosclerotic plaques with contrast enhanced ultrasound (CEUS)

SPIE Proceedings
2012-02-23 | Conference paper
DOI: 10.1117/12.912468
Part of ISSN: 0277-786X
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Motion compensation method for quantification of neovascularization in carotid atherosclerotic plaques with contrast enhanced ultrasound (CEUS)

IEEE International Ultrasonics Symposium, IUS
2011 | Conference paper
DOI: 10.1109/ULTSYM.2011.0284
EID:

2-s2.0-84869061350

Part of ISSN: 19485719 19485727
Contributors: Akkus, Z.; Bosch, J.G.; Renaud, G.; Hoogi, A.; Ten Kate, G.L.; Van Den Oord, S.; Schinkel, A.; De Jong, N.; Van Der Steen, A.F.W.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Quantitative analysis of flow behavior of carotid plaque neovasculature

IEEE International Ultrasonics Symposium, IUS
2011 | Conference paper
DOI: 10.1109/ULTSYM.2011.0525
EID:

2-s2.0-84869002706

Part of ISSN: 19485719 19485727
Contributors: Hoogi, A.; Bosch, J.G.; Akkus, Z.; Ten Kate, G.L.; Van Den Oord, S.C.H.; Schinkel, A.F.L.; De Jong, N.; Adam, D.; Van Der Steen, A.F.W.
Source: Self-asserted source
Assaf Hoogi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Carotid Plaque Vulnerability: Quantification of Neovascularization on Contrast-Enhanced Ultrasound With Histopathologic Correlation

American Journal of Roentgenology
2011-02 | Journal article
DOI: 10.2214/ajr.10.4522
Part of ISSN: 0361-803X
Part of ISSN: 1546-3141
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Subharmonic Response of Encapsulated Microbubbles: Conditions for Existence and Amplification

Ultrasound in Medicine & Biology
2007-11 | Journal article
DOI: 10.1016/j.ultrasmedbio.2007.05.011
Part of ISSN: 0301-5629
Source: Self-asserted source
Assaf Hoogi
grade
Preferred source (of 3)‎

Adaptive local window-based methods for characterizing features of interest in digital images and systems for practicing same

Patent
Source: Self-asserted source
Assaf Hoogi
How many people are using ORCID?