Personal information

Chemist of Natural Product Biosynthesis
Japan

Activities

Employment (4)

Tokyo Institute of Technology: O-okayama, Tokyo, JP

2010-05-01 to present | Associate Professor (Chemistry)
Employment
Source: Self-asserted source
Fumitaka Kudo

Tokyo Institute of Technology: Meguro, Tokyo, JP

2003-04-01 to 2010-04-30 | Assistant Professor (Chemistry)
Employment
Source: Self-asserted source
Fumitaka Kudo

Johns Hopkins University: Baltimore, MD, US

2001-04-01 to 2003-03-31 | Postdoc (Chemistry)
Employment
Source: Self-asserted source
Fumitaka Kudo

Brown University: Providence, RI, US

1999-04-01 to 2001-03-31 | Postdoc (Chemistry)
Employment
Source: Self-asserted source
Fumitaka Kudo

Education and qualifications (2)

Tokyo Institute of Technology: Mguro, Tokyo, JP

1994-04-01 to 1999-03-31 | PhD (Chemistry)
Education
Source: Self-asserted source
Fumitaka Kudo

Tokyo Institute of Technology: Meguro, Tokyo, JP

1990-04-01 to 1994-03-31 | Bachelor of Science (Chemistry)
Education
Source: Self-asserted source
Fumitaka Kudo

Funding (7)

Redesigning biosynthetic machineries of antitumor macrolide antibiotics

2017-04-01 to 2019-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: grant.17H05434
Source: Self-asserted source
Fumitaka Kudo via DimensionsWizard

Functional analysis of radical SAM enzymes involved in the biosynthesis of aminoglycoside antibiotics

Source: Self-asserted source
Fumitaka Kudo via DimensionsWizard

非天然型生合成マシナリーのデザインと機能化

2011-04-01 to 2013-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: grant.23108509
Source: Self-asserted source
Fumitaka Kudo via DimensionsWizard

Investigation of tetrodotoxin biosynthesis based on the genome sequence analysis of the potential producer microorganisms

Source: Self-asserted source
Fumitaka Kudo via DimensionsWizard

Identification and characterization of unique radical SAM enzymes, which use S-adenosyl methionine as oxidant

Source: Self-asserted source
Fumitaka Kudo via DimensionsWizard

Biosynthetic studies on a novel 17-membered macro-cyclic compound produced by a Streptomyces strain

Source: Self-asserted source
Fumitaka Kudo via DimensionsWizard

アミノグリコシド抗生物質生合成システムの分子解析に基づいた新規有用物質創製

Source: Self-asserted source
Fumitaka Kudo via DimensionsWizard

Works (50 of 99)

Items per page:
Page 1 of 2

Biosynthesis of macrolactam antibiotics with β-amino acid polyketide starter units

The Journal of Antibiotics
2024-08 | Journal article
Contributors: Fumitaka Kudo
Source: check_circle
Crossref

Engineering the Substrate Specificity of (S)‐β‐Phenylalanine Adenylation Enzyme HitB

ChemBioChem
2024-08 | Journal article
Contributors: Dawei Wang; Akimasa Miyanaga; Taichi Chisuga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

The Post‐Polyketide Synthase Modification Mechanism in Hitachimycin Biosynthesis

ChemBioChem
2024-08-19 | Journal article
Contributors: Fumitaka Kudo; Kazuma Tsuboi; Mutsumi Ikezaki; Daiki Nagayama; Koichi Kawamura; Taishi Ando; Akimasa Miyanaga; Tadashi Eguchi
Source: check_circle
Crossref

Structural Basis of Amide-Forming Adenylation Enzyme VinM in Vicenistatin Biosynthesis

ACS Chemical Biology
2023-11-17 | Journal article
Contributors: Akimasa Miyanaga; Kenji Nagata; Joji Nakajima; Taichi Chisuga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Structure-Based Analysis of Transient Interactions between Ketosynthase-like Decarboxylase and Acyl Carrier Protein in a Loading Module of Modular Polyketide Synthase

ACS Chemical Biology
2023-06-16 | Journal article
Contributors: Taichi Chisuga; Satoshi Murakami; Akimasa Miyanaga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Unique Initiation and Termination Mechanisms Involved in the Biosynthesis of a Hybrid Polyketide-Nonribosomal Peptide Lyngbyapeptin B Produced by the Marine Cyanobacterium Moorena bouillonii

ACS Chemical Biology
2023-04-21 | Journal article
Contributors: Fumitaka Kudo; Takuji Chikuma; Mizuki Nambu; Taichi Chisuga; Shimpei Sumimoto; Arihiro Iwasaki; Kiyotake Suenaga; Akimasa Miyanaga; Tadashi Eguchi
Source: check_circle
Crossref

Acyltransferase Domain Exchange between Two Independent Type I Polyketide Synthases in the Same Producer Strain of Macrolide Antibiotics

ChemBioChem
2023-03-14 | Journal article
Contributors: Fumitaka Kudo; Kosuke Kishikawa; Kazuma Tsuboi; Takafusa Kido; Takeo Usui; Junko Hashimoto; Kazuo Shin‐ya; Akimasa Miyanaga; Tadashi Eguchi
Source: check_circle
Crossref

Structural Basis of Transient Interactions of Acyltransferase VinK with the Loading Acyl Carrier Protein of the Vicenistatin Modular Polyketide Synthase

Biochemistry
2023-01-03 | Journal article
Contributors: Akimasa Miyanaga; Koichi Kawada; Taichi Chisuga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Biosynthesis of cyclitols

Natural Product Reports
2022 | Journal article
Contributors: Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Mechanism of S-Adenosyl-l-methionine C-Methylation by Cobalamin-dependent Radical S-Adenosyl-l-methionine Methylase in 1-Amino-2-methylcyclopropanecarboxylic Acid Biosynthesis

Organic Letters
2022-12-16 | Journal article
Contributors: Fumitaka Kudo; Atsushi Minato; Shusuke Sato; Nayuta Nagano; Chitose Maruyama; Yoshimitsu Hamano; Junko Hashimoto; Ikuko Kozone; Kazuo Shin-ya; Tadashi Eguchi
Source: check_circle
Crossref

Structural Insight into the Reaction Mechanism of Ketosynthase-Like Decarboxylase in a Loading Module of Modular Polyketide Synthases

ACS Chemical Biology
2022-01-21 | Journal article
Contributors: Taichi Chisuga; Akira Nagai; Akimasa Miyanaga; Ena Goto; Kosuke Kishikawa; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Biochemical and Mutational Analysis of Radical S-Adenosyl-L-Methionine Adenosylhopane Synthase HpnH from Zymomonas mobilis Reveals that the Conserved Residue Cysteine-106 Reduces a Radical Intermediate and Determines the Stereochemistry

Biochemistry
2021-09-28 | Journal article
Contributors: Shusuke Sato; Fumitaka Kudo; Michel Rohmer; Tadashi Eguchi
Source: check_circle
Crossref

Complex structure of the acyltransferase VinK and the carrier protein VinL with a pantetheine cross-linking probe

Acta Crystallographica Section F Structural Biology Communications
2021-09-01 | Journal article
Contributors: Akimasa Miyanaga; Risako Ouchi; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Mutational Biosynthesis of Hitachimycin Analogs Controlled by the β-Amino Acid–Selective Adenylation Enzyme HitB

ACS Chemical Biology
2021-03-19 | Journal article
Contributors: Fumitaka Kudo; Sotaro Takahashi; Akimasa Miyanaga; Yuichiro Nakazawa; Kota Nishino; Yuki Hayakawa; Koichi Kawamura; Fumihiro Ishikawa; Genzoh Tanabe; Naeko Iwai et al.
Source: check_circle
Crossref

One-pot enzymatic synthesis of 2-deoxy-scyllo-inosose from d-glucose and polyphosphate

Bioscience, Biotechnology, and Biochemistry
2021-01-07 | Journal article
Contributors: Fumitaka Kudo; Ayaka Mori; Mai Koide; Ryo Yajima; Ryohei Takeishi; Akimasa Miyanaga; Tadashi Eguchi
Source: check_circle
Crossref

Generation of incednine derivatives by mutasynthesis

The Journal of Antibiotics
2020-11-04 | Journal article
Contributors: Akimasa Miyanaga; Ryoma Takaku; Makoto Takaishi; Etsu Tashiro; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Structural Characterization of Complex of Adenylation Domain and Carrier Protein by Using Pantetheine Cross-Linking Probe

ACS Chemical Biology
2020-07-17 | Journal article
Contributors: Akimasa Miyanaga; Shohei Kurihara; Taichi Chisuga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

C-Methylation of S-adenosyl-L-Methionine Occurs Prior to Cyclopropanation in the Biosynthesis of 1-Amino-2-Methylcyclopropanecarboxylic Acid (Norcoronamic Acid) in a Bacterium

Biomolecules
2020-05-16 | Journal article
Contributors: Chitose Maruyama; Yukiko Chinone; Shusuke Sato; Fumitaka Kudo; Kosuke Ohsawa; Junya Kubota; Junko Hashimoto; Ikuko Kozone; Takayuki Doi; Kazuo Shin-ya et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Biochemical and Structural Analysis of a Dehydrogenase, KanD2, and an Aminotransferase, KanS2, That Are Responsible for the Construction of the Kanosamine Moiety in Kanamycin Biosynthesis

Biochemistry
2020-04-21 | Journal article
Contributors: Fumitaka Kudo; Yukinobu Kitayama; Akimasa Miyanaga; Akane Hirayama; Tadashi Eguchi
Source: check_circle
Crossref

Characterization of Radical SAM Adenosylhopane Synthase, HpnH, which Catalyzes the 5′‐Deoxyadenosyl Radical Addition to Diploptene in the Biosynthesis of C35 Bacteriohopanepolyols

Angewandte Chemie International Edition
2020-01-02 | Journal article
Contributors: Shusuke Sato; Fumitaka Kudo; Michel Rohmer; Tadashi Eguchi
Source: check_circle
Crossref

Characterization of Radical SAM Adenosylhopane Synthase, HpnH, which Catalyzes the 5′‐Deoxyadenosyl Radical Addition to Diploptene in the Biosynthesis of C35 Bacteriohopanepolyols

Angewandte Chemie
2020-01-02 | Journal article
Contributors: Shusuke Sato; Fumitaka Kudo; Michel Rohmer; Tadashi Eguchi
Source: check_circle
Crossref

Stereochemistry in the Reaction of the myo-Inositol Phosphate Synthase Ortholog Ari2 during Aristeromycin Biosynthesis

Biochemistry
2019-12-24 | Journal article
Contributors: Fumitaka Kudo; Takeshi Tsunoda; Kaito Yamaguchi; Akimasa Miyanaga; Tadashi Eguchi
Source: check_circle
Crossref

Functional and Structural Analyses of the Split-Dehydratase Domain in the Biosynthesis of Macrolactam Polyketide Cremimycin

Biochemistry
2019-12-03 | Journal article
Contributors: Daisuke Kawasaki; Akimasa Miyanaga; Taichi Chisuga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Functional Characterization of 3‐Aminobenzoic Acid Adenylation Enzyme PctU and UDP‐N‐Acetyl‐d‐Glucosamine: 3‐Aminobenzoyl‐ACP Glycosyltransferase PctL in Pactamycin Biosynthesis

ChemBioChem
2019-10 | Journal article
Contributors: Fumitaka Kudo; Jiahao Zhang; Shusuke Sato; Akane Hirayama; Tadashi Eguchi
Source: check_circle
Crossref

Structural Analysis of the Glycine Oxidase Homologue CmiS2 Reveals a Unique Substrate Recognition Mechanism for Formation of a β-Amino Acid Starter Unit in Cremimycin Biosynthesis

Biochemistry
2019-06-18 | Journal article
Contributors: Daisuke Kawasaki; Taichi Chisuga; Akimasa Miyanaga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

An Engineered Aryl Acid Adenylation Domain with an Enlarged Substrate Binding Pocket

Angewandte Chemie International Edition
2019-05-20 | Journal article
Contributors: Fumihiro Ishikawa; Akimasa Miyanaga; Hinano Kitayama; Shinya Nakamura; Isao Nakanishi; Fumitaka Kudo; Tadashi Eguchi; Genzoh Tanabe
Source: check_circle
Crossref

An Engineered Aryl Acid Adenylation Domain with an Enlarged Substrate Binding Pocket

Angewandte Chemie
2019-05-20 | Journal article
Contributors: Fumihiro Ishikawa; Akimasa Miyanaga; Hinano Kitayama; Shinya Nakamura; Isao Nakanishi; Fumitaka Kudo; Tadashi Eguchi; Genzoh Tanabe
Source: check_circle
Crossref

Functional and structural characterization of IdnL7, an adenylation enzyme involved in incednine biosynthesis

Acta Crystallographica Section F Structural Biology Communications
2019-04-01 | Journal article
Contributors: Jolanta Cieślak; Akimasa Miyanaga; Makoto Takaishi; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Structural basis of the nonribosomal codes for nonproteinogenic amino acid selective adenylation enzymes in the biosynthesis of natural products

Journal of Industrial Microbiology & Biotechnology
2019-03-05 | Journal article
Contributors: Fumitaka Kudo; Akimasa Miyanaga; Tadashi Eguchi
Source: check_circle
Crossref

Carbon-free production of 2-deoxy-scyllo-inosose (DOI) in cyanobacterium Synechococcus elongatus PCC 7942

Bioscience Biotechnology and Biochemistry
2018 | Journal article
WOSUID:

WOS:000423629000024

Contributors: Watanabe, Satoru; Ozawa, Hiroaki; Kato, Hiroaki; Nimura-Matsune, Kaori; Hirayama, Toshifumi; Kudo, Fumitaka; Eguchi, Tadashi; Kakinuma, Katsumi; Yoshikawa, Hirofumi
Source: Self-asserted source
Fumitaka Kudo via ResearcherID

NAD(+)-Dependent Dehydrogenase PctP and Pyridoxal 5 '-Phosphate Dependent Aminotransferase PctC Catalyze the First Postglycosylation Modification of the Sugar Intermediate in Pactamycin Biosynthesis

Chembiochem
2018 | Journal article
WOSUID:

WOS:000422716300004

Contributors: Hirayama, Akane; Chu, Jinmiao; Goto, Ena; Kudo, Fumitaka; Eguchi, Tadashi
Source: Self-asserted source
Fumitaka Kudo via ResearcherID

Protein–protein interactions in polyketide synthase–nonribosomal peptide synthetase hybrid assembly lines

Natural Product Reports
2018 | Journal article
Contributors: Akimasa Miyanaga; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

C-Methylation Catalyzed by Fom3, a Cobalamin-Dependent Radical S-adenosyl-l-methionine Enzyme in Fosfomycin Biosynthesis, Proceeds with Inversion of Configuration

Biochemistry
2018-08-21 | Journal article
Contributors: Shusuke Sato; Fumitaka Kudo; Tomohisa Kuzuyama; Friedrich Hammerschmidt; Tadashi Eguchi
Source: check_circle
Crossref

Biochemical and Structural Analysis of FomD That Catalyzes the Hydrolysis of Cytidylyl (S)-2-Hydroxypropylphosphonate in Fosfomycin Biosynthesis

Biochemistry
2018-08-14 | Journal article
Contributors: Shusuke Sato; Akimasa Miyanaga; Seung-Young Kim; Tomohisa Kuzuyama; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Structural Basis of Protein–Protein Interactions between a trans-Acting Acyltransferase and Acyl Carrier Protein in Polyketide Disorazole Biosynthesis

Journal of the American Chemical Society
2018-06-27 | Journal article
Contributors: Akimasa Miyanaga; Risako Ouchi; Fumihiro Ishikawa; Ena Goto; Genzoh Tanabe; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Biochemical characterization and structural insight into aliphatic β-amino acid adenylation enzymes IdnL1 and CmiS6

Proteins: Structure, Function and Bioinformatics
2017 | Journal article
EID:

2-s2.0-85016730887

Contributors: Cieślak, J.; Miyanaga, A.; Takaku, R.; Takaishi, M.; Amagai, K.; Kudo, F.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier
grade
Preferred source (of 2)‎

Substrate specificity of radical S-adenosyl-l-methionine dehydratase AprD4 and its partner reductase AprD3 in the C3′-deoxygenation of aminoglycoside antibiotics

Journal of Antibiotics
2017 | Journal article
EID:

2-s2.0-85016246773

Contributors: Kudo, F.; Tokumitsu, T.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Substrate Recognition by a Dual‐Function P450 Monooxygenase GfsF Involved in FD‐891 Biosynthesis

ChemBioChem
2017-11-02 | Journal article
Contributors: Akimasa Miyanaga; Ryuichi Takayanagi; Takashi Furuya; Ayano Kawamata; Tomohiro Itagaki; Yoshiharu Iwabuchi; Naoki Kanoh; Fumitaka Kudo; Tadashi Eguchi
Source: check_circle
Crossref

Identification of a gene cluster for telomestatin biosynthesis and heterologous expression using a specific promoter in a clean host

Scientific Reports
2017-06-13 | Journal article
Contributors: Keita Amagai; Haruo Ikeda; Junko Hashimoto; Ikuko Kozone; Miho Izumikawa; Fumitaka Kudo; Tadashi Eguchi; Takemichi Nakamura; Hiroyuki Osada; Shunji Takahashi et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Aminoglycoside Antibiotics: New Insights into the Biosynthetic Machinery of Old Drugs

Chemical Record
2016 | Journal article
EID:

2-s2.0-84959110813

Contributors: Kudo, F.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Five-Membered Cyclitol Phosphate Formation by a myo-Inositol Phosphate Synthase Orthologue in the Biosynthesis of the Carbocyclic Nucleoside Antibiotic Aristeromycin

ChemBioChem
2016 | Journal article
EID:

2-s2.0-84995554246

Contributors: Kudo, F.; Tsunoda, T.; Takashima, M.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Genome mining of the sordarin biosynthetic gene cluster from Sordaria araneosa Cain ATCC 36386: Characterization of cycloaraneosene synthase and GDP-6-deoxyaltrose transferase

Journal of Antibiotics
2016 | Journal article
EID:

2-s2.0-84979928370

Contributors: Kudo, F.; Matsuura, Y.; Hayashi, T.; Fukushima, M.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Identification of the fluvirucin B<inf>2</inf> (Sch 38518) biosynthetic gene cluster from actinomadura fulva sub sp. Indica ATCC 53714: Substrate Specificity of the β-amino acid selective adenylating enzyme FlvN

Bioscience, Biotechnology and Biochemistry
2016 | Journal article
EID:

2-s2.0-84964620315

Contributors: Miyanaga, A.; Hayakawa, Y.; Numakura, M.; Hashimoto, J.; Teruya, K.; Hirano, T.; Shin-Ya, K.; Kudo, F.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Mechanisms of β-amino acid incorporation in polyketide macrolactam biosynthesis

Current Opinion in Chemical Biology
2016 | Journal article
EID:

2-s2.0-84986327470

Contributors: Miyanaga, A.; Kudo, F.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Parallel Post-Polyketide Synthase Modification Mechanism Involved in FD-891 Biosynthesis in Streptomyces graminofaciens A-8890

ChemBioChem
2016 | Journal article
EID:

2-s2.0-84956930609

Contributors: Kudo, F.; Kawamura, K.; Furuya, T.; Yamanishi, H.; Motegi, A.; Komatsubara, A.; Numakura, M.; Miyanaga, A.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Structure-based analysis of the molecular interactions between acyltransferase and acyl carrier protein in vicenistatin biosynthesis

Proceedings of the National Academy of Sciences of the United States of America
2016 | Journal article
EID:

2-s2.0-84959019680

Contributors: Miyanaga, A.; Iwasawa, S.; Shinohara, Y.; Kudo, F.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Synthesis and structure-activity relationship study of FD-891: Importance of the side chain and C8-C9 epoxide for cytotoxic activity against cancer cells

Journal of Antibiotics
2016 | Journal article
EID:

2-s2.0-84964597644

Contributors: Itagaki, T.; Kawamata, A.; Takeuchi, M.; Hamada, K.; Iwabuchi, Y.; Eguchi, T.; Kudo, F.; Usui, T.; Kanoh, N.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Vicenistatin induces early endosome-derived vacuole formation in mammalian cells

Bioscience, Biotechnology and Biochemistry
2016 | Journal article
EID:

2-s2.0-84964652367

Contributors: Nishiyama, Y.; Ohmichi, T.; Kazami, S.; Iwasaki, H.; Mano, K.; Nagumo, Y.; Kudo, F.; Ichikawa, S.; Iwabuchi, Y.; Kanoh, N. et al.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Epimerization at C-3″ in butirosin biosynthesis by an NAD&lt;sup&gt;+&lt;/sup&gt;-dependent dehydrogenase BtrE and an NADPH-dependent reductase BtrF

ChemBioChem
2015 | Journal article
EID:

2-s2.0-84922569602

Contributors: Takeishi, R.; Kudo, F.; Numakura, M.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier

Genome Mining of the Hitachimycin Biosynthetic Gene Cluster: Involvement of a Phenylalanine-2,3-aminomutase in Biosynthesis

ChemBioChem
2015 | Journal article
EID:

2-s2.0-84926348880

Contributors: Kudo, F.; Kawamura, K.; Uchino, A.; Miyanaga, A.; Numakura, M.; Takayanagi, R.; Eguchi, T.
Source: Self-asserted source
Fumitaka Kudo via Scopus - Elsevier
Items per page:
Page 1 of 2

Peer review (37 reviews for 8 publications/grants)

Review activity for ACS chemical biology. (3)
Review activity for Biochemistry. (1)
Review activity for Chemical reviews. (1)
Review activity for Journal of organic chemistry. (6)
Review activity for Journal of the American Chemical Society. (15)
Review activity for Nature chemistry. (1)
Review activity for Nature synthesis. (1)
Review activity for Organic letters. (9)