Personal information

Genomics, Genetics, Fish Biology, Aquaculture

Biography

Dr. Palti leads efforts at the Agricultural Research Service of the US Department of Agriculture to develop tools and resources for genomics research in rainbow trout and North American Atlantic salmon. His leadership in developing genomics research tools includes the current version of the rainbow trout reference genome sequence (GenBank-Accession GCA_013265735.3), a 57K SNP chip and high-density genetic maps using SNP chip genotype data, and a 50K SNP chip and reference genome assembly for N.A. Atlantic salmon (GCA_021399835.1). The major focus of Dr. Palti’s current research is aimed at developing, evaluating and implementing strategies for genome-enabled selection in traits that cannot be measured directly on potential breeders in rainbow trout aquaculture. He is using genome-wide association analyses and collaborates with other geneticists, research physiologists, immunologists, microbiologists and nutritionists to map quantitative trait loci that affect disease resistance and other aquaculture production efficiency traits with the overarching goal of identifying genes and genetic elements that can be utilized for better understanding of fish biology and for improving aquaculture production efficiency and sustainability.

Activities

Employment (1)

USDA Agricultural Research Service: Washington, DC, US

2001-09-01 to present
Employment
Source: Self-asserted source
Yniv Palti

Education and qualifications (1)

Washington State University: Pullman, WA, US

1992-05-01 to 1997-12-31 | Ph.D.
Education
Source: Self-asserted source
Yniv Palti

Works (11)

Chromosome level genome assembly and annotation of the Swanson rainbow trout homozygous line

Scientific Data
2025-02-26 | Journal article
Contributors: Ali Ali; Guangtu Gao; Rafet Al-Tobasei; Ramey C. Youngblood; Geoffrey C. Waldbieser; Brian E. Scheffler; Yniv Palti; Mohamed Salem
Source: check_circle
Crossref

Transcriptomic Response of the Ovarian Follicle Complex in Post-Vitellogenic Rainbow Trout to 17α,20β-Dihdroxy-4-pregnen-3-one In Vitro

International Journal of Molecular Sciences
2024-11-26 | Journal article
Contributors: Hao Ma; Guangtu Gao; Yniv Palti; Vibha Tripathi; Jill E. Birkett; Gregory M. Weber
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

The genome assembly of the westslope cutthroat trout,Oncorhynchus lewisi, reveals interspecific chromosomal rearrangements with the rainbow trout

2024-11-17 | Preprint
Contributors: Anne-Marie Flores; Kris A. Christensen; Theresa Godin; Yniv Palti; Matthew R. Campbell; Geoffrey C. Waldbieser; Sheron A. Simpson; Brian E. Scheffler; Seth R. Smith; Andrew R. Whiteley et al.
Source: check_circle
Crossref

Accurate genotype imputation from low-coverage whole-genome sequencing data of rainbow trout

G3: Genes, Genomes, Genetics
2024-09-04 | Journal article
Contributors: Sixin Liu; Kyle E Martin; Warren M Snelling; Roseanna Long; Timothy D Leeds; Roger L Vallejo; Gregory D Wiens; Yniv Palti; C Palaiokostas
Source: check_circle
Crossref

Genomic analysis of a second rainbow trout line (Arlee) leads to an extended description of the IGH VDJ gene repertoire

Developmental & Comparative Immunology
2021-05 | Journal article
Contributors: Susana Magadan; Stanislas Mondot; Yniv Palti; Guangtu Gao; Marie Paule Lefranc; Pierre Boudinot
Source: check_circle
Crossref

A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals chromosomal rearrangements in rainbow trout

G3 Genes|Genomes|Genetics
2021-04-15 | Journal article
Contributors: Guangtu Gao; Susana Magadan; Geoffrey C Waldbieser; Ramey C Youngblood; Paul A Wheeler; Brian E Scheffler; Gary H Thorgaard; Yniv Palti; D J Macqueen
Source: check_circle
Crossref

Structure and regulation of the NK-lysin (1–4) and NK-lysin like (a and b) antimicrobial genes in rainbow trout (Oncorhynchus mykiss)

Developmental & Comparative Immunology
2021-03 | Journal article
Contributors: Hao Ma; Yueh-Chiang Han; Yniv Palti; Guangtu Gao; Sixin Liu; Debra E. Palmquist; Gregory D. Wiens; Brian S. Shepherd
Source: check_circle
Crossref

A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals structural genome variation in rainbow trout

2020-12-29 | Other
Contributors: Guangtu Gao; Susana Magadan; Geoffrey C. Waldbieser; Ramey C. Youngblood; Paul A. Wheeler; Brian E. Scheffler; Gary H. Thorgaard; Yniv Palti
Source: check_circle
Crossref

Whole-genome mapping of quantitative trait loci and accuracy of genomic predictions for resistance to columnaris disease in two rainbow trout breeding populations

Genetics Selection Evolution
2019-12 | Journal article
Contributors: Rafael M. O. Silva; Jason P. Evenhuis; Roger L. Vallejo; Guangtu Gao; Kyle E. Martin; Tim D. Leeds; Yniv Palti; Daniela A. L. Lourenco
Source: check_circle
Crossref

Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

Genetics Selection Evolution
2019-08-29 | Journal article
Part of ISSN: 1297-9686
Source: Self-asserted source
Yniv Palti

The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

Molecular Ecology Resources
2015-05 | Journal article
Contributors: Y. Palti; G. Gao; S. Liu; M. P. Kent; S. Lien; M. R. Miller; C. E. Rexroad, III; T. Moen
Source: check_circle
Crossref

Peer review (8 reviews for 4 publications/grants)

Review activity for Aquaculture. (3)
Review activity for BMC genomics (2)
Review activity for Genetics, selection, evolution. (2)
Review activity for Marine biotechnology. (1)