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Scopus Author ID: 57223877581

Keywords

single cell RNA sequencing, single cell Spatial transcriptomics, single cell RNA sequencing clustering, single cell RNA sequencing annotation, IBD, Crohn's disease, lncRNA

Countries

China, United States

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Employment (1)

Vanderbilt University Medical Center: Nashville, TN, US

2019-11-01 to 2024-03-01 | PostDoc (Department of Biostatistics)
Employment
Source: Self-asserted source
Jia Li

Education and qualifications (2)

Chinese Academy of Sciences: Beijing, CN

2014-09-01 to 2019-06-30 | PhD (CAS-MPG Partner Institute for computational Biology)
Education
Source: Self-asserted source
Jia Li

Xiamen University: Amoy, CN

2010-09-01 to 2014-06-30 | B.S. (School of Life Sciences)
Education
Source: Self-asserted source
Jia Li

Works (13)

Cross-scale multi-instance learning for pathological image diagnosis

Medical Image Analysis
2024-05 | Journal article
DOI: 10.1016/j.media.2024.103124
Contributors: Ruining Deng; Can Cui; Lucas W. Remedios; Shunxing Bao; R. Michael Womick; Sophie Chiron; Jia Li; Joseph T. Roland; Ken S. Lau; Qi Liu et al.
Source: check_circle
Crossref

Single-cell and Spatial Transcriptomics Clustering with an Optimized Adaptive K-Nearest Neighbor Graph

2023-10-17 | Preprint
DOI: 10.1101/2023.10.13.562261
Contributors: Jia Li; Yu Shyr; Qi Liu
Source: Self-asserted source
Jia Li

A Specialized Epithelial Cell Type Regulating Mucosal Immunity and Driving Human Crohn’s Disease

2023-10-02 | Preprint
DOI: 10.1101/2023.09.30.560293
Contributors: Jia Li; Alan J. Simmons; Sophie Chiron; Marisol A. Ramirez-Solano; Naila Tasneem; Harsimran Kaur; Yanwen Xu; Frank Revetta; Paige N. Vega; Shunxing Bao et al.
Source: Self-asserted source
Jia Li

Topological-preserving membrane skeleton segmentation in multiplex immunofluorescence imaging

Medical Imaging 2023: Digital and Computational Pathology
2023-04-07 | Conference paper
DOI: 10.1117/12.2654087
Contributors: Shunxing Bao; Can Cui; Jia Li; Yucheng Tang; Ho Hin Lee; Ruining Deng; Lucas W. Remedios; Xin Yu; Qi Yang; Sophie Chiron et al.
Source: Self-asserted source
Jia Li

MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging

International Workshop on Medical Optical Imaging and Virtual Microscopy Image Analysis
2022 | Conference paper
DOI: 10.1007/978-3-031-16961-8_5
Part of ISBN: 9783031169601
Part of ISBN: 9783031169618
Part of ISSN: 0302-9743
Part of ISSN: 1611-3349
Contributors: Shunxing Bao; Jia Li; Can Cui; Yucheng Tang; Ruining Deng; Lucas W. Remedios; Ho Hin Lee; Sophie Chiron; Nathan Heath Patterson; Ken S. Lau et al.
Source: Self-asserted source
Jia Li

Dysregulated ligand–receptor interactions from single-cell transcriptomics

Bioinformatics
2022-06-13 | Journal article
DOI: 10.1093/bioinformatics/btac294
Part of ISSN: 1367-4803
Part of ISSN: 1367-4811
Contributors: QI LIU; Chih-Yuan Hsu; Jia Li; Yu Shyr
Source: Self-asserted source
Jia Li

scMRMA: single cell multiresolution marker-based annotation

Nucleic Acids Research
2022-01-25 | Journal article
DOI: 10.1093/nar/gkab931
Part of ISSN: 0305-1048
Part of ISSN: 1362-4962
Contributors: Jia Li; Quanhu Sheng; Yu Shyr; QI LIU
Source: Self-asserted source
Jia Li

Beyond Programmed Death-Ligand 1: B7-H6 Emerges as a Potential Immunotherapy Target in SCLC

Journal of Thoracic Oncology
2021-07 | Journal article
DOI: 10.1016/j.jtho.2021.03.011
Part of ISSN: 1556-0864
Contributors: Portia L. Thomas; Sarah M. Groves; Yun-Kai Zhang; Jia Li; Paula Gonzalez-Ericsson; Shamilene Sivagnanam; Courtney B. Betts; Hua-Chang Chen; Qi Liu; Cindy Lowe et al.
Source: Self-asserted source
Jia Li

Integrative analysis reveals novel driver genes and molecular subclasses of hepatocellular carcinoma

Aging
2020-12-15 | Journal article
DOI: 10.18632/aging.104047
Part of ISSN: 1945-4589
Contributors: Liguang Yang; Zhengtao Zhang; Yidi Sun; Shichao Pang; Qianlan Yao; Ping Lin; Jinming Cheng; Jia Li; Guohui Ding; Lijian Hui et al.
Source: Self-asserted source
Jia Li

Comparison of immune profiles between hepatocellular carcinoma subtypes

Biophysics Reports
2020-02 | Journal article
DOI: 10.1007/s41048-019-00102-w
Part of ISSN: 2364-3439
Part of ISSN: 2364-3420
Contributors: Xuemin Pan; Ping Lin; Fangyoumin Feng; Jia Li; Yuan-Yuan Li; Wentao Dai; Bo Hu; Xin-Rong Yang; Jia Fan; Hong Li et al.
Source: Self-asserted source
Jia Li

PDXliver: a database of liver cancer patient derived xenograft mouse models

BMC Cancer
2018-12 | Journal article
DOI: 10.1186/s12885-018-4459-6
Part of ISSN: 1471-2407
Contributors: Sheng He; Bo Hu; Chao Li; Ping Lin; Wei-Guo Tang; Yun-Fan Sun; Fang-You-Min Feng; Wei Guo; Jia Li; Given Names Deactivated Family Name Deactivated et al.
Source: Self-asserted source
Jia Li

Systematic identification of rabbit LncRNAs reveals functional roles in atherosclerosis

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
2018-06 | Journal article
DOI: 10.1016/j.bbadis.2017.12.040
Part of ISSN: 0925-4439
Contributors: Jia Li; Qianlan Yao; Fangyoumin Feng; Sheng He; Ping Lin; Liguang Yang; Chuhua Yang; Hong Li; Yixue Li
Source: Self-asserted source
Jia Li

Global Prioritizing Disease Candidate lncRNAs via a Multi-level Composite Network

Scientific Reports
2017-01-04 | Journal article
DOI: 10.1038/srep39516
Part of ISSN: 2045-2322
Contributors: Qianlan Yao; Leilei Wu; Jia Li; Li guang Yang; Yidi Sun; Zhen Li; Sheng He; Fangyoumin Feng; Hong Li; Yixue Li
Source: Self-asserted source
Jia Li
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