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Scopus Author ID: 10044926600

Biography

Dr Theodore Dalamagas is Research Director, Vice Director of Information Management Systems Institute at Athena Research Center, co-founder and Chief Research Officer of Symbiolabs (spinoff of Athena), and external instructor for Univ. of Athens, MSc in Data Science and Information Technologies. He received his Diploma in Electrical Engineering from NTU Athens, Greece, his MSc in Advanced Information Systems from Glasgow University, Scotland, and his PhD from NTUA. His research and technology areas of interest include: scientific databanks and data infrastructures, data Web and information retrieval, data interoperability and integration, biomedical applications and bioinformatics, data services for waste valorization and industrial symbiosis. He has more than 20 years of R&D experience of running and coordinating R&I EU and national IT projects related to the intersection of the above areas. He is a member of the Data Governance and AI Sectorial Scientific Council of the National Council for Research, Technology and Innovation. He has published more than 100 articles in international journals and conference proceedings.

Activities

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Employment (5)

National and Kapodistrian University of Athens: Zographou, GR

2020-02-01 to present | Instructor, MSc Data Science and Information Technologies. (Department of Informatics and Telecommunications)
Employment
Source: Self-asserted source
Theodore Dalamagas

Athena Research and Innovation Center In Information Communication & Knowledge Technologies: Marousi, GR

2018-12-01 to present | Research Director (Information Management Systems Institute)
Employment
Source: Self-asserted source
Theodore Dalamagas

Athena Research and Innovation Center In Information Communication & Knowledge Technologies: Marousi, GR

2011-01-01 to 2018-11-30 | Senior Researcher (Information Management Systems Institute)
Employment
Source: Self-asserted source
Theodore Dalamagas

Athena Research and Innovation Center In Information Communication & Knowledge Technologies: Marousi, GR

2007-10-01 to 2010-12-31 | Assistant Researcher (Information Management Systems Institute)
Employment
Source: Self-asserted source
Theodore Dalamagas

University of Peloponnese: Tripoli, GR

2005-09-01 to 2007-09-30 | Lecturer (Department of Informatics and Telecommunications)
Employment
Source: Self-asserted source
Theodore Dalamagas

Education and qualifications (3)

National Technical University of Athens: Athens, Attiki, GR

1998-09-01 to 2004-02-28 | PhD (Electical and Computer Engineering)
Education
Source: Self-asserted source
Theodore Dalamagas

University of Glasgow: Glasgow, Glasgow, GB

1996-09-01 to 1997-10-31 | MSc, Advanced Information Systems (Computing Science)
Education
Source: Self-asserted source
Theodore Dalamagas

National Technical University of Athens: Athens, Attiki, GR

1990-09-01 to 1996-02-28 | Dipl Eng (Electrical and Computer Engineering)
Education
Source: Self-asserted source
Theodore Dalamagas

Works (50 of 103)

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Page 1 of 3

A Soft Sensing Approach for Efficient Monitoring of Nanobody-Based Scorpion Antivenom Production

2025 | Book chapter
DOI: 10.1007/978-3-031-82073-1_27
Contributors: Juan C. Acosta-Pavas; David Camilo Corrales; Irene Martínez-Menéndez; Susana María Alonso Villela; Balkiss Bouhaouala-Zahar; Georgios K. Georgakilas; Konstantinos Mexis; Stefanos Xenios; Theodore Dalamagas; Antonis Kokosis et al.
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Crossref

Comparison of Machine Learning-Enhanced Dynamic Hybrid Models for a Nanobody Scorpion Antivenom Production with Escherichia Coli

2025 | Book chapter
DOI: 10.1007/978-3-031-82073-1_30
Contributors: Irene Martínez-Menéndez; Juan C. Acosta-Pavas; David Camilo Corrales; Susana María Alonso Villela; Balkiss Bouhaouala-Zahar; Georgios K. Georgakilas; Konstantinos Mexis; Stefanos Xenios; Theodore Dalamagas; Antonis Kokosis et al.
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Towards a machine learning operations (MLOps) soft sensor for real-time predictions in industrial-scale fed-batch fermentation

Computers & Chemical Engineering
2025-03 | Journal article
DOI: 10.1016/j.compchemeng.2024.108991
Contributors: Brett Metcalfe; Juan Camilo Acosta-Pavas; Carlos Eduardo Robles-Rodriguez; George K. Georgakilas; Theodore Dalamagas; Cesar Arturo Aceves-Lara; Fayza Daboussi; Jasper J Koehorst; David Camilo Corrales
Source: check_circle
Crossref

Enhancing Patient Empowerment and Health Literacy: Integrating Knowledge Graphs with Language Models for Personalized Health Content Delivery

2024-08-22 | Book chapter
DOI: 10.3233/SHTI240582
Contributors: Christine Kakalou; Christina Karamanidou; Theodore Dalamagas; Manolis Koubarakis
Source: check_circle
Crossref

Bridging Data and AIOps for Future AI Advancements with Human-in-the-Loop. The AI-DAPT Concept

2024-06-24 | Conference paper
DOI: 10.1109/ICE/ITMC61926.2024.10794334
Contributors: Sotiris Koussouris; Theodore Dalamagas; Paulo Figueiras; George Pallis; Nefeli Bountouni; Vasilis Gkolemis; Kostas Perakis; Dimitris Bibikas; Carlos Agostinho
Source: check_circle
Crossref

Atrapos: Real-time Evaluation of Metapath Query Workloads

2023-04-30 | Conference paper
DOI: 10.1145/3543507.3583322
Contributors: Serafeim Chatzopoulos; Thanasis Vergoulis; Dimitrios Skoutas; Theodore Dalamagas; Christos Tryfonopoulos; Panagiotis Karras
Source: check_circle
Crossref

Atrapos: Evaluating metapath query workloads in real time

arXiv
2022 | Other
EID:

2-s2.0-85123331566

Part of ISSN: 23318422
Contributors: Chatzopoulos, S.; Vergoulis, T.; Skoutas, D.; Dalamagas, T.; Tryfonopoulos, C.; Karras, P.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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SurvAnnT: Facilitating Community-Led Scientific Surveys and Annotations

2022 | Book chapter
DOI: 10.1007/978-3-031-16802-4_61
Contributors: Anargiros Tzerefos; Ilias Kanellos; Serafeim Chatzopoulos; Theodore Dalamagas; Thanasis Vergoulis
Source: check_circle
Crossref

i4sea: a big data platform for sea area monitoring and analysis of fishing vessels activity

Geo-Spatial Information Science
2021 | Journal article
DOI: 10.1080/10095020.2021.1971055
EID:

2-s2.0-85117262786

Part of ISSN: 10095020
Contributors: Tampakis, P.; Chondrodima, E.; Tritsarolis, A.; Pikrakis, A.; Theodoridis, Y.; Pristouris, K.; Nakos, H.; Kalampokis, P.; Dalamagas, T.
Source: Self-asserted source
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Intelligent Management Platform for Material Exchange Optimization and Industrial Symbiosis

Computer Aided Chemical Engineering
2021 | Book chapter
DOI: 10.1016/B978-0-323-88506-5.50119-4
EID:

2-s2.0-85112020355

Part of ISSN: 15707946
Contributors: Chatzidimitriou, T.; Gentimis, T.; Michalopoulos, C.; Kokossis, A.C.; Dalamagas, T.
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Machine learning applications and process intelligence for cement industries

Computer Aided Chemical Engineering
2021 | Book chapter
DOI: 10.1016/B978-0-323-88506-5.50112-1
EID:

2-s2.0-85110431526

Part of ISSN: 15707946
Contributors: Chatzilenas, C.; Gentimis, T.; Dalamagas, T.; Kokossis, A.C.; Katsiaboulas, A.; Marinos, I.
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Modeling of Crisis Periods in Stock Markets

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2021 | Book
DOI: 10.1007/978-3-030-92121-7_5
EID:

2-s2.0-85121905340

Part of ISSN: 16113349 03029743
Contributors: Chalkis, A.; Christoforou, E.; Dalamagas, T.; Emiris, I.Z.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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Ranking papers by their short-term scientific impact

Proceedings - International Conference on Data Engineering
2021 | Conference paper
DOI: 10.1109/ICDE51399.2021.00190
EID:

2-s2.0-85107017017

Part of ISSN: 10844627
Contributors: Kanellos, I.; Vergoulis, T.; Sacharidis, D.; Dalamagas, T.; Vassiliou, Y.
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SCHeMa: Scheduling scientific containers on a cluster of heterogeneous machines

arXiv
2021 | Other
EID:

2-s2.0-85104221144

Part of ISSN: 23318422
Contributors: Vergoulis, T.; Zagganas, K.; Kavouras, L.; Reczko, M.; Sartzetakis, S.; Dalamagas, T.
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SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines

ACM International Conference Proceeding Series
2021 | Conference paper
DOI: 10.1145/3468791.3468813
EID:

2-s2.0-85112749719
Contributors: Vergoulis, T.; Zagganas, K.; Kavouras, L.; Reczko, M.; Sartzetakis, S.; Dalamagas, T.
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SciNeM: A scalable data science tool for heterogeneous network mining

Advances in Database Technology - EDBT
2021 | Conference paper
DOI: 10.5441/002/edbt.2021.76
EID:

2-s2.0-85113716038

Part of ISSN: 23672005
Contributors: Chatzopoulos, S.; Vergoulis, T.; Deligiannis, P.; Skoutas, D.; Dalamagas, T.; Tryfonopoulos, C.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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Simplifying impact prediction for scientific articles

CEUR Workshop Proceedings
2021 | Conference paper
EID:

2-s2.0-85103488710

Part of ISSN: 16130073
Contributors: Vergoulis, T.; Kanellos, I.; Giannopoulos, G.; Dalamagas, T.
Source: Self-asserted source
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Simplifying p-value calculation for the unbiased microRNA enrichment analysis, using ML-techniques

CEUR Workshop Proceedings
2021 | Conference paper
EID:

2-s2.0-85103475397

Part of ISSN: 16130073
Contributors: Zagganas, K.; Lioli, M.; Vergoulis, T.; Dalamagas, T.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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VeTo+: improved expert set expansion in academia

International Journal on Digital Libraries
2021 | Journal article
DOI: 10.1007/s00799-021-00318-7
EID:

2-s2.0-85119053747

Part of ISSN: 14321300 14325012
Contributors: Chatzopoulos, S.; Vergoulis, T.; Dalamagas, T.; Tryfonopoulos, C.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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BIP4COVID19: Releasing impact measures for articles relevant to COVID-19

Quantitative Science Studies
2021-12-01 | Journal article
DOI: 10.1162/qss_a_00169
Contributors: Thanasis Vergoulis; Ilias Kanellos; Serafeim Chatzopoulos; Danae Pla Karidi; Theodore Dalamagas
Source: check_circle
Crossref

Further improvements on estimating the popularity of recently published papers

Quantitative Science Studies
2021-12-01 | Journal article
DOI: 10.1162/qss_a_00165
Contributors: Serafeim Chatzopoulos; Thanasis Vergoulis; Ilias Kanellos; Theodore Dalamagas; Christos Tryfonopoulos
Source: check_circle
Crossref

Bias in miRNA enrichment analysis related to gene functional annotations

2021-08-17 | Preprint
DOI: 10.1101/2021.08.16.456527
Contributors: Konstantinos Zagganas; Thanasis Vergoulis; Georgios K. Georgakilas; Spiros Skiadopoulos; Theodore Dalamagas
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Crossref
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Impact-Based Ranking of Scientific Publications: A Survey and Experimental Evaluation

IEEE Transactions on Knowledge and Data Engineering
2021-04-01 | Journal article
DOI: 10.1109/TKDE.2019.2941206
Contributors: Ilias Kanellos; Thanasis Vergoulis; Dimitris Sacharidis; Theodore Dalamagas; Yannis Vassiliou
Source: check_circle
Crossref
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ArtSim: Improved Estimation of Current Impact for Recent Articles

Communications in Computer and Information Science
2020 | Book
DOI: 10.1007/978-3-030-55814-7_27
EID:

2-s2.0-85090096811

Part of ISSN: 18650937 18650929
Contributors: Chatzopoulos, S.; Vergoulis, T.; Kanellos, I.; Dalamagas, T.; Tryfonopoulos, C.
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Efficient Calculation of Empirical P-values for Association Testing of Binary Classifications

ACM International Conference Proceeding Series
2020 | Conference paper
DOI: 10.1145/3400903.3400923
EID:

2-s2.0-85090406431
Contributors: Zagganas, K.; Vergoulis, T.; Skiadopoulos, S.; Dalamagas, T.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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Ranking papers by their short-term scientific impact

arXiv
2020 | Other
EID:

2-s2.0-85095212961

Part of ISSN: 23318422
Contributors: Kanellos, I.; Vergoulis, T.; Sacharidis, D.; Dalamagas, T.; Vassiliou, Y.
Source: Self-asserted source
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Sea Area Monitoring and Analysis of Fishing Vessels Activity: The i4sea Big Data Platform

Proceedings - IEEE International Conference on Mobile Data Management
2020 | Conference paper
DOI: 10.1109/MDM48529.2020.00063
EID:

2-s2.0-85090393394

Part of ISSN: 15516245
Contributors: Tampakis, P.; Chondrodima, E.; Pikrakis, A.; Theodoridis, Y.; Pristouris, K.; Nakos, H.; Petra, E.; Dalamagas, T.; Kandiros, A.; Markakis, G. et al.
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Theodore Dalamagas via Scopus - Elsevier
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Simplifying impact prediction for scientific articles

arXiv
2020 | Other
EID:

2-s2.0-85101691343

Part of ISSN: 23318422
Contributors: Vergoulis, T.; Kanellos, I.; Giannopoulos, G.; Dalamagas, T.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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VeTo: Expert Set Expansion in Academia

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2020 | Book
DOI: 10.1007/978-3-030-54956-5_4
EID:

2-s2.0-85090100269

Part of ISSN: 16113349 03029743
Contributors: Vergoulis, T.; Chatzopoulos, S.; Dalamagas, T.; Tryfonopoulos, C.
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Theodore Dalamagas via Scopus - Elsevier
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BIP4COVID19: Releasing impact measures for articles relevant to COVID-19

2020-04-12 | Preprint
DOI: 10.1101/2020.04.11.037093
Contributors: Thanasis Vergoulis; Ilias Kanellos; Serafeim Chatzopoulos; Danae Pla Karidi; Theodore Dalamagas
Source: check_circle
Crossref
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A Study on the Readability of Scientific Publications

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2019 | Book
DOI: 10.1007/978-3-030-30760-8_12
EID:

2-s2.0-85072864745

Part of ISSN: 16113349 03029743
Contributors: Vergoulis, T.; Kanellos, I.; Tzerefos, A.; Chatzopoulos, S.; Dalamagas, T.; Skiadopoulos, S.
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BIP! Finder: Facilitating scientific literature search by exploiting impact-based ranking

International Conference on Information and Knowledge Management, Proceedings
2019 | Conference paper
DOI: 10.1145/3357384.3357850
EID:

2-s2.0-85075454744
Contributors: Vergoulis, T.; Deligiannis, P.; Chatzopoulos, S.; Tryfonopoulos, C.; Kanellos, I.; Dalamagas, T.
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SciTo Trends: Visualising Scientific Topic Trends

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2019 | Book
DOI: 10.1007/978-3-030-30760-8_41
EID:

2-s2.0-85072850235

Part of ISSN: 16113349 03029743
Contributors: Chatzopoulos, S.; Deligiannis, P.; Vergoulis, T.; Kanellos, I.; Tryfonopoulos, C.; Dalamagas, T.
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DIANA-TarBase v8: A decade-long collection of experimentally supported miRNA-gene interactions

Nucleic Acids Research
2018 | Journal article
DOI: 10.1093/nar/gkx1141
EID:

2-s2.0-85040943205

Part of ISSN: 13624962 03051048
Contributors: Karagkouni, D.; Paraskevopoulou, M.D.; Chatzopoulos, S.; Vlachos, I.S.; Tastsoglou, S.; Kanellos, I.; Papadimitriou, D.; Kavakiotis, I.; Maniou, S.; Skoufos, G. et al.
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BUFET: Boosting the unbiased miRNA functional enrichment analysis using bitsets

BMC Bioinformatics
2017 | Journal article
DOI: 10.1186/s12859-017-1812-8
EID:

2-s2.0-85028920664

Part of ISSN: 14712105
Contributors: Zagganas, K.; Vergoulis, T.; Paraskevopoulou, M.D.; Vlachos, I.S.; Skiadopoulos, S.; Dalamagas, T.
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DIANA-LncBase v2: Indexing microRNA targets on non-coding transcripts

Nucleic Acids Research
2016 | Journal article
DOI: 10.1093/nar/gkv1270
EID:

2-s2.0-84976875164

Part of ISSN: 13624962 03051048
Contributors: Paraskevopoulou, M.D.; Vlachos, I.S.; Karagkouni, D.; Georgakilas, G.; Kanellos, I.; Vergoulis, T.; Zagganas, K.; Tsanakas, P.; Floros, E.; Dalamagas, T. et al.
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DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data

Nucleic acids research
2016 | Journal article
DOI: 10.1093/nar/gkw455
EID:

2-s2.0-85012935580

Part of ISSN: 13624962
Contributors: Vlachos, I.S.; Vergoulis, T.; Paraskevopoulou, M.D.; Lykokanellos, F.; Georgakilas, G.; Georgiou, P.; Chatzopoulos, S.; Karagkouni, D.; Christodoulou, F.; Dalamagas, T. et al.
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DIANA-miRGen v3.0: Accurate characterization of microRNA promoters and their regulators

Nucleic Acids Research
2016 | Journal article
DOI: 10.1093/nar/gkv1254
EID:

2-s2.0-84976872185

Part of ISSN: 13624962 03051048
Contributors: Georgakilas, G.; Vlachos, I.S.; Zagganas, K.; Vergoulis, T.; Paraskevopoulou, M.D.; Kanellos, I.; Tsanakas, P.; Dellis, D.; Fevgas, A.; Dalamagas, T. et al.
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Foreword

2016 IEEE 32nd International Conference on Data Engineering Workshops, ICDEW 2016
2016 | Conference paper
DOI: 10.1109/ICDEW.2016.7495624
EID:

2-s2.0-84982815646
Contributors: Dalamagas, T.; Kirrane, S.; Stavrakas, Y.
Source: Self-asserted source
Theodore Dalamagas via Scopus - Elsevier
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DIANA-miRPath v3.0: Deciphering microRNA function with experimental support

Nucleic Acids Research
2015 | Journal article
DOI: 10.1093/nar/gkv403
EID:

2-s2.0-84979854255

Part of ISSN: 13624962 03051048
Contributors: Vlachos, I.S.; Zagganas, K.; Paraskevopoulou, M.D.; Georgakilas, G.; Karagkouni, D.; Vergoulis, T.; Dalamagas, T.; Hatzigeorgiou, A.G.
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DIANA-TarBase v7.0: Indexing more than half a million experimentally supported miRNA:mRNA interactions

Nucleic Acids Research
2015 | Journal article
DOI: 10.1093/nar/gku1215
EID:

2-s2.0-84941087952

Part of ISSN: 13624962 03051048
Contributors: Vlachos, I.S.; Paraskevopoulou, M.D.; Karagkouni, D.; Georgakilas, G.; Vergoulis, T.; Kanellos, I.; Anastasopoulos, I.-L.; Maniou, S.; Karathanou, K.; Kalfakakou, D. et al.
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Keywords-to-SPARQL translation for RDF data search and exploration

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2015 | Book
DOI: 10.1007/978-3-319-24592-8_9
EID:

2-s2.0-84944754469

Part of ISSN: 16113349 03029743
Contributors: Gkirtzou, K.; Karozos, K.; Vassalos, V.; Dalamagas, T.
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MirPub v2: Towards ranking and refining miRNA publication search results

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2015 | Book
DOI: 10.1007/978-3-319-24592-8_34
EID:

2-s2.0-84944810820

Part of ISSN: 16113349 03029743
Contributors: Kanellos, I.; Vlachokyriakou, V.; Vergoulis, T.; Georgakilas, G.; Vassiliou, Y.; Hatzigeorgiou, A.K.; Dalamagas, T.
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MirPub: A database for searching microRNA publications

Bioinformatics
2015 | Journal article
DOI: 10.1093/bioinformatics/btu819
EID:

2-s2.0-84940756250

Part of ISSN: 14602059 13674803
Contributors: Vergoulis, T.; Kanellos, I.; Kostoulas, N.; Georgakilas, G.; Sellis, T.; Hatzigeorgiou, A.; Dalamagas, T.
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RDF keyword search based on keywords-to-SPARQL translation

NWSearch 2015 - Proceedings of the 1st International Workshop on Novel Web Search Interfaces and Systems
2015 | Conference paper
DOI: 10.1145/2810355.2810357
EID:

2-s2.0-84956704238
Contributors: Gkirtzou, K.; Papastefanatos, G.; Dalamagas, T.
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Theodore Dalamagas via Scopus - Elsevier
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RDF resource search and exploration with LinkZoo

DATA 2015 - 4th International Conference on Data Management Technologies and Applications, Proceedings
2015 | Conference paper
DOI: 10.5220/0005499602320239
EID:

2-s2.0-84964987714
Contributors: Meimaris, M.; Alexiou, G.; Gkirtzou, K.; Papastefanatos, G.; Dalamagas, T.
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TarMiner: Automatic extraction of miRNA targets from literature

ACM International Conference Proceeding Series
2015 | Conference paper
DOI: 10.1145/2791347.2791366
EID:

2-s2.0-84959535310
Contributors: Tsoupidi, R.-M.; Kanellos, I.; Vergoulis, T.; Vlachos, I.S.; Hatzigeorgiou, A.G.; Dalamagas, T.
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MR-microT: A MapReduce-based MicroRNA target prediction method

ACM International Conference Proceeding Series
2014 | Conference paper
DOI: 10.1145/2618243.2618289
EID:

2-s2.0-84904410230
Contributors: Kanellos, I.; Vergoulis, T.; Sacharidis, D.; Dalamagas, T.; Hatzigeorgiou, A.; Sartzetakis, S.; Sellis, T.
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Publishing diachronic life science linked data

CEUR Workshop Proceedings
2014 | Conference paper
EID:

2-s2.0-84920054533

Part of ISSN: 16130073
Contributors: Gkirtzou, K.; Vergoulis, T.; Hatzigeorgiou, A.; Sellis, T.; Dalamagas, T.
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Theodore Dalamagas via Scopus - Elsevier
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Classifying and comparing community innovation in Idea Management Systems

Decision Support Systems
2013 | Journal article
DOI: 10.1016/j.dss.2012.12.004
EID:

2-s2.0-84875421321

Part of ISSN: 01679236
Contributors: Westerski, A.; Dalamagas, T.; Iglesias, C.A.
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