Personal information

Medical Image Analysis
United States

Activities

Employment (2)

NVIDIA Corp: Santa Clara, CA, US

2018-10-01 to present | Senior Scientist
Employment
Source: Self-asserted source
Ziyue Xu

National Institutes of Health: Bethesda, MD, US

2012-06 to 2018-09 | Staff Scientist (Radiology and Imaging Sciences)
Employment
Source: Self-asserted source
Ziyue Xu

Education and qualifications (3)

University of Iowa: Iowa City, IA, US

2009-05 to 2012-05 | PhD (Electrical and Computer Engineering)
Education
Source: Self-asserted source
Ziyue Xu

University of Iowa: Iowa City, IA, US

2007-08 to 2009-05 | MS (Electrical and Computer Engineering)
Education
Source: Self-asserted source
Ziyue Xu

Tsinghua University: Beijing, Beijing, CN

2002-09 to 2006-06 | BE (Electronics Engineering)
Education
Source: Self-asserted source
Ziyue Xu

Works (50 of 65)

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EXACT-Net: Framework for EHR-Guided Lung Tumor Auto-Segmentation for Non-Small Cell Lung Cancer Radiotherapy

Cancers
2024-12-06 | Journal article
Contributors: Hamed Hooshangnejad; Gaofeng Huang; Katelyn Kelly; Xue Feng; Yi Luo; Rui Zhang; Ziyue Xu; Quan Chen; Kai Ding
Source: check_circle
Crossref
grade
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External Validation of a Previously Developed Deep Learning–based Prostate Lesion Detection Algorithm on Paired External and In-House Biparametric MRI Scans

Radiology: Imaging Cancer
2024-11-01 | Journal article
Contributors: Enis C. Yilmaz; Stephanie A. Harmon; Yan Mee Law; Erich P. Huang; Mason J. Belue; Yue Lin; David G. Gelikman; Kutsev B. Ozyoruk; Dong Yang; Ziyue Xu et al.
Source: check_circle
Crossref

Improving Tumor Classification by Reusing Self-Predicted Segmentation of Medical Images as Guiding Knowledge

IEEE Journal of Biomedical and Health Informatics
2024-01 | Journal article
Contributors: Xiaoyi Lin; Mingyu Wang; Fei Li; Ziyue Xu; Jia Chen; Xin Chen; Chenglang Yuan; Songxiong Wu; Yanji Luo; Jingxian Shen et al.
Source: check_circle
Crossref

Rapid artificial intelligence solutions in a pandemic—The COVID-19-20 Lung CT Lesion Segmentation Challenge

Medical Image Analysis
2022-11 | Journal article
Contributors: Holger R. Roth; Ziyue Xu; Carlos Tor-Díez; Ramon Sanchez Jacob; Jonathan Zember; Jose Molto; Wenqi Li; Sheng Xu; Baris Turkbey; Evrim Turkbey et al.
Source: check_circle
Crossref

3D Lightweight Network for Simultaneous Registration and Segmentation of Organs-at-Risk in CT Images of Head and Neck Cancer

IEEE Transactions on Medical Imaging
2022-04 | Journal article
Contributors: Bin Huang; Yufeng Ye; Ziyue Xu; Zongyou Cai; Yan He; Zhangnan Zhong; Lingxiang Liu; Xin Chen; Hanwei Chen; Bingsheng Huang
Source: check_circle
Crossref

Accounting for Dependencies in Deep Learning Based Multiple Instance Learning for Whole Slide Imaging

2021 | Book chapter
Contributors: Andriy Myronenko; Ziyue Xu; Dong Yang; Holger R. Roth; Daguang Xu
Source: check_circle
Crossref

Federated Whole Prostate Segmentation in MRI with Personalized Neural Architectures

2021 | Book chapter
Contributors: Holger R. Roth; Dong Yang; Wenqi Li; Andriy Myronenko; Wentao Zhu; Ziyue Xu; Xiaosong Wang; Daguang Xu
Source: check_circle
Crossref

Going to Extremes: Weakly Supervised Medical Image Segmentation

Machine Learning and Knowledge Extraction
2021-06-02 | Journal article
Contributors: Holger R. Roth; Dong Yang; Ziyue Xu; Xiaosong Wang; Daguang Xu
Source: check_circle
Crossref
grade
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Federated semi-supervised learning for COVID region segmentation in chest CT using multi-national data from China, Italy, Japan

Medical Image Analysis
2021-05 | Journal article
Contributors: Dong Yang; Ziyue Xu; Wenqi Li; Andriy Myronenko; Holger R. Roth; Stephanie Harmon; Sheng Xu; Baris Turkbey; Evrim Turkbey; Xiaosong Wang et al.
Source: check_circle
Crossref

Capsules for biomedical image segmentation

Medical Image Analysis
2021-02 | Journal article
Contributors: Rodney LaLonde; Ziyue Xu; Ismail Irmakci; Sanjay Jain; Ulas Bagci
Source: check_circle
Crossref

Lymphocyte-driven regional immunopathology in pneumonitis caused by impaired central immune tolerance

Science Translational Medicine
2019-06-05 | Journal article
Contributors: Elise M. N. Ferré; Timothy J. Break; Peter D. Burbelo; Michael Allgäuer; David E. Kleiner; Dakai Jin; Ziyue Xu; Les R. Folio; Daniel J. Mollura; Muthulekha Swamydas et al.
Source: check_circle
Crossref

Cough Frequency During Treatment Associated With Baseline Cavitary Volume and Proximity to the Airway in Pulmonary TB

Chest
2018 | Journal article
Contributors: Proano, Alvaro; Bui, David P.; Lopez, Jose W.; Vu, Nancy M.; Bravard, Marjory A.; Lee, Gwenyth O.; Tracey, Brian H.; Xu, Ziyue; Comina, German; Ticona, Eduardo et al.
Source: check_circle
Web of Science Researcher Profile Sync

Holistic classification of CT attenuation patterns for interstitial lung diseases via deep convolutional neural networks

Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization
2018 | Journal article
Contributors: Gao, Mingchen; Bagci, Ulas; Lu, Le; Wu, Aaron; Buty, Mario; Shin, Hoo-Chang; Roth, Holger; Papadakis, Georgios Z.; Depeursinge, Adrien; Summers, Ronald M. et al.
Source: check_circle
Web of Science Researcher Profile Sync

WHITE MATTER HYPERINTENSITY SEGMENTATION FROM T1 AND FLAIR IMAGES USING FULLY CONVOLUTIONAL NEURAL NETWORKS ENHANCED WITH RESIDUAL CONNECTIONS

IEEE International Symposium on Biomedical Imaging (ISBI)
2018 | Conference paper
Contributors: Jin, Dakai; Xu, Ziyue; Harrison, Adam P.; Mollura, Daniel J.
Source: check_circle
Web of Science Researcher Profile Sync

Joint solution for PET image segmentation, denoising, and partial volume correction

Medical Image Analysis
2018-05 | Journal article
Contributors: Ziyue Xu; Mingchen Gao; Georgios Z. Papadakis; Brian Luna; Sanjay Jain; Daniel J. Mollura; Ulas Bagci
Source: check_circle
Crossref
grade
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A multichannel block-matching denoising algorithm for spectral photon-counting CT images

Medical Physics
2017 | Journal article
Contributors: Harrison, Adam P.; Xu, Ziyue; Pourmorteza, Amir; Bluemke, David A.; Mollura, Daniel J.
Source: check_circle
Web of Science Researcher Profile Sync

Application of Image Processing Techniques in Molecular Imaging of Cancer

Contrast Media & Molecular Imaging
2017 | Journal article
Contributors: Huang, Bingsheng; Zheng, Guoyan; Xu, Ziyue; Rao, Shengxiang; Wang, Silun
Source: check_circle
Web of Science Researcher Profile Sync

CHARACTERIZATION AND IMAGING OF THE PRIMATE MODEL FOR NIPAH VIRUS INFECTION

The American Journal of Tropical Medicine and Hygiene
2017 | Journal article
Contributors: Lentz, Margaret; Cong, Yu; Bartos, Chris; Hammoud, Dima; Huzella, Louis; Jahrling, Peter B.; Janosko, Krisztina; Lara, Abigail; Mollura, Daniel; Ragland, Dan et al.
Source: check_circle
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Computer automated algorithm to evaluate cavitary lesions in adults with pulmonary tuberculosis

Journal of Thoracic Disease
2017 | Journal article
EID:

2-s2.0-85010424948

Contributors: Proaño, A.; Xu, Z.; Caligiuri, P.; Mollura, D.J.; Gilman, R.H.; Cabrera, L.; Varela, M.; Vu, N.M.; Prado, M.; Richard Rodríguez et al.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Interstitial Lung Diseases via Deep Convolutional Neural Networks: Segmentation Label Propagation, Unordered Pooling and Cross-Dataset Learning

Advanced Topics in Computer Vision
2017 | Journal article
Contributors: Gao, Mingchen; Xu, Ziyue; Mollura, Daniel J.
Source: check_circle
Web of Science Researcher Profile Sync

Loss in lung volume and changes in the immune response demonstrate disease progression in African green monkeys infected by small-particle aerosol and intratracheal exposure to Nipah virus

PLoS Neglected Tropical Diseases
2017 | Journal article
Contributors: Cong, Yu; Cong, Yu; Lentz, Margaret R.; Lentz, Margaret R.; Lara, Abigail; Lara, Abigail; Alexander, Isis; Alexander, Isis; Bartos, Christopher; Bartos, Christopher et al.
Source: check_circle
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Quantitative Image Quality Comparison of Reduced-and Standard-Dose Dual-Energy Multiphase Chest, Abdomen, and Pelvis CT

Tomography
2017 | Journal article
Contributors: Buty, Mario; Xu, Ziyue; Wu, Aaron; Gao, Mingchen; Nelson, Chelyse; Papadakis, Georgios Z.; Teomete, Uygar; Celik, Haydar; Turkbey, Baris; Choyke, Peter et al.
Source: check_circle
Web of Science Researcher Profile Sync

Three Aspects on Using Convolutional Neural Networks for Computer-Aided Detection in Medical Imaging

Advanced Topics in Computer Vision
2017 | Journal article
Contributors: Shin, Hoo-Chang; Roth, Holger R.; Gao, Mingchen; Lu, Le; Xu, Ziyue; Nogues, Isabella; Yao, Jianhua; Mollura, Daniel; Summers, Ronald M.
Source: check_circle
Web of Science Researcher Profile Sync

Atlas-based rib-bone detection in chest X-rays

Computerized Medical Imaging and Graphics
2016 | Journal article
EID:

2-s2.0-84964917657

Contributors: Candemir, S.; Jaeger, S.; Antani, S.; Bagci, U.; Folio, L.R.; Xu, Z.; Thoma, G.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Characterization of lung nodule malignancy using hybrid shape and appearance features

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2016 | Book
EID:

2-s2.0-84996503636

Contributors: Buty, M.; Xu, Z.; Gao, M.; Bagci, U.; Wu, A.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier

Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning

IEEE Transactions on Medical Imaging
2016 | Journal article
EID:

2-s2.0-84969962996

Contributors: Shin, H.-C.; Roth, H.R.; Gao, M.; Lu, L.; Xu, Z.; Nogues, I.; Yao, J.; Mollura, D.; Summers, R.M.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Deep vessel tracking: A generalized probabilistic approach via deep learning

Proceedings - International Symposium on Biomedical Imaging
2016 | Conference paper
EID:

2-s2.0-84978370232

Contributors: Wu, A.; Xu, Z.; Gao, M.; Buty, M.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
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Mouse model of pulmonary cavitary tuberculosis and expression of matrix metalloproteinase-9

DMM Disease Models and Mechanisms
2016 | Journal article
EID:

2-s2.0-84977489233

Contributors: Ordonez, A.A.; Tasneen, R.; Pokkali, S.; Xu, Z.; Converse, P.J.; Klunk, M.H.; Mollura, D.J.; Nuermberger, E.L.; Jain, S.K.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Multi-label deep regression and unordered pooling for holistic interstitial lung disease pattern detection

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2016 | Book
EID:

2-s2.0-84992522033

Contributors: Gao, M.; Xu, Z.; Lu, L.; Harrison, A.P.; Summers, R.M.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Segmentation label propagation using deep convolutional neural networks and dense conditional random field

Proceedings - International Symposium on Biomedical Imaging
2016 | Conference paper
EID:

2-s2.0-84978383957

Contributors: Gao, M.; Xu, Z.; Lu, L.; Wu, A.; Nogues, I.; Summers, R.M.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Characterization of trabecular bone plate-rod microarchitecture using multirow detector CT and the tensor scale: Algorithms, validation, and applications to pilot human studies

Medical Physics
2015 | Journal article
EID:

2-s2.0-84940426510

Contributors: Saha, P.K.; Liu, Y.; Chen, C.; Jin, D.; Letuchy, E.M.; Xu, Z.; Amelon, R.E.; Burns, T.L.; Torner, J.C.; Levy, S.M. et al.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Computer-aided pulmonary image analysis in small animal models

Medical Physics
2015 | Journal article
EID:

2-s2.0-84935038645

Contributors: Xu, Z.; Bagci, U.; Mansoor, A.; Kramer-Marek, G.; Luna, B.; Kubler, A.; Dey, B.; Foster, B.; Papadakis, G.Z.; Camp, J.V. et al.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
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Erratum: A generic approach to pathological lung segmentation(IEEE Transactions on Medical Imaging (2014) 33:12(2293-2310))

IEEE Transactions on Medical Imaging
2015 | Journal article
EID:

2-s2.0-84937579064

Contributors: Mansoor, A.; Bagci, U.; Xu, Z.; Foster, B.; Olivier, K.N.; Elinoff, J.M.; Suffredini, A.F.; Udupa, J.K.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier

Fuzzy connectedness image co-segmentation for hybrid PET/MRI and PET/CT scans

Lecture Notes in Computational Vision and Biomechanics
2015 | Book
EID:

2-s2.0-84931269115

Contributors: Xu, Z.; Bagci, U.; Udupa, J.K.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Highly precise partial volume correction for PET images: An iterative approach via shape consistency

Proceedings - International Symposium on Biomedical Imaging
2015 | Conference paper
EID:

2-s2.0-84944324711

Contributors: Xu, Z.; Bagci, U.; Gao, M.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
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Segmentation and image analysis of abnormal lungs at CT: Current approaches, challenges, and future trends

Radiographics
2015 | Journal article
EID:

2-s2.0-84937574596

Contributors: Mansoor, A.; Bagci, U.; Foster, B.; Xu, Z.; Papadakis, G.Z.; Folio, L.R.; Udupa, J.K.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

A hybrid method for airway segmentation and automated measurement of bronchial wall thickness on CT

Medical Image Analysis
2015-08 | Journal article
Contributors: Ziyue Xu; Ulas Bagci; Brent Foster; Awais Mansoor; Jayaram K. Udupa; Daniel J. Mollura
Source: check_circle
Crossref
grade
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Mycobacterium tuberculosis dysregulates MMP/TIMP balance to drive rapid cavitation and unrestrained bacterial proliferation

The Journal of Pathology
2015-02 | Journal article
Contributors: André Kübler; Brian Luna; Christer Larsson; Nicole C Ammerman; Bruno B Andrade; Marlene Orandle; Kevin W Bock; Ziyue Xu; Ulas Bagci; Daniel J Mollura et al.
Source: check_circle
Crossref
grade
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A generic approach to pathological lung segmentation

IEEE Transactions on Medical Imaging
2014 | Journal article
EID:

2-s2.0-84914162074

Contributors: Mansoor, A.; Bagci, U.; Xu, Z.; Foster, B.; Olivier, K.N.; Elinoff, J.M.; Suffredini, A.F.; Udupa, J.K.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Accurate and efficient separation of left and right lungs from 3D CT scans: A generic hysteresis approach

2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014
2014 | Conference paper
EID:

2-s2.0-84914139376

Contributors: Xu, Z.; Bagci, U.; Jonsson, C.; Jain, S.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

CIDI-lung-seg: a single-click annotation tool for automatic delineation of lungs from CT scans

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
2014 | Journal article
EID:

2-s2.0-85017330590

Contributors: Mansoor, A.; Bagci, U.; Foster, B.; Xu, Z.; Douglas, D.; Solomon, J.M.; Udupa, J.K.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Diffusion based enhancement of PET images for improved diagnostic measurements in clinical nuclear medicine

Journal of Nuclear Medicine
2014 | Journal article
Contributors: Xu, Ziyue; Bagci, Ulas; Mollura, Daniel
Source: check_circle
Web of Science Researcher Profile Sync

Efficient ribcage segmentation from CT scans using shape features

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
2014 | Journal article
EID:

2-s2.0-84964312424

Contributors: Xu, Z.; Bagci, U.; Jonsson, C.; Jain, S.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Recent advances in PET, PET-CT, and MRI-PET image segmentation techniques

Journal of Nuclear Medicine
2014 | Journal article
Contributors: Bagci, Ulas; Xu, Ziyue; Mollura, Daniel
Source: check_circle
Web of Science Researcher Profile Sync

Segmentation based denoising of PET images: An iterative approach via regional means and affinity propagation

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2014 | Book
EID:

2-s2.0-84906983735

Contributors: Xu, Z.; Bagci, U.; Seidel, J.; Thomasson, D.; Solomon, J.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Segmentation based denoising of PET images: an iterative approach via regional means and affinity propagation.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention
2014 | Journal article
EID:

2-s2.0-84909588481

Contributors: Xu, Z.; Bagci, U.; Seidel, J.; Thomasson, D.; Solomon, J.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier

Segmentation of PET images for computer-aided functional quantification of tuberculosis in small animal models

IEEE Transactions on Biomedical Engineering
2014 | Journal article
EID:

2-s2.0-84896859764

Contributors: Foster, B.; Bagci, U.; Xu, Z.; Dey, B.; Luna, B.; Bishai, W.; Jain, S.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

A review on segmentation of positron emission tomography images

Computers in Biology and Medicine
2014-07 | Journal article
Contributors: Brent Foster; Ulas Bagci; Awais Mansoor; Ziyue Xu; Daniel J. Mollura
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

A hybrid multi-scale approach to automatic airway tree segmentation from CT scans

Proceedings - International Symposium on Biomedical Imaging
2013 | Conference paper
EID:

2-s2.0-84881624538

Contributors: Xu, Z.; Bagci, U.; Foster, B.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎

Computer-aided detection and quantification of cavitary tuberculosis from CT scans

Medical Physics
2013 | Journal article
EID:

2-s2.0-84889677853

Contributors: Xu, Z.; Bagci, U.; Kubler, A.; Luna, B.; Jain, S.; Bishai, W.R.; Mollura, D.J.
Source: Self-asserted source
Ziyue Xu via Scopus - Elsevier
grade
Preferred source (of 2)‎
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Peer review (137 reviews for 14 publications/grants)

Review activity for Acta radiologica (1)
Review activity for IEEE journal of biomedical and health informatics. (39)
Review activity for IEEE reviews in biomedical engineering. (1)
Review activity for IEEE transactions on medical imaging. (58)
Review activity for IEEE transactions on pattern analysis and machine intelligence. (6)
Review activity for Journal of digital imaging. (1)
Review activity for Medical image analysis. (20)
Review activity for Medical physics. (3)
Review activity for Nature communications (1)
Review activity for npj digital medicine. (1)
Review activity for PloS one. (3)
Review activity for The British journal of radiology. (1)
Review activity for The visual computer (1)
Review activity for The visual computer. (1)