Personal information

Activities

Employment (1)

Thomas Jefferson University: Philadelphia, Pennsylvania, US

2019-01 to present | Research Instructor (Cancer Biology)
Employment
Source: Self-asserted source
ramkrishna mitra

Education and qualifications (1)

Jadavpur University: Kolkata, West Bengal, IN

Ph.D. in Engineering (Computer Science)
Qualification
Source: Self-asserted source
ramkrishna mitra

Works (46)

Genomic Landscape and Potential Regulation of RNA Editing in Drug Resistance

Advanced Science
2023-05 | Journal article
Contributors: Xu Zhou; Ramkrishna Mitra; Fei Hou; Shunheng Zhou; Lihong Wang; Wei Jiang
Source: check_circle
Crossref

Decoding the lncRNAome Across Diverse Cellular Stresses Reveals Core p53-effector Pan-cancer Suppressive lncRNAs

Cancer Research Communications
2023-05-11 | Journal article
Contributors: Ramkrishna Mitra; Clare M. Adams; Christine M. Eischen
Source: check_circle
Crossref

Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-05-09 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-05-09 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-05-09 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-05-09 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-05-04 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-05-04 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-05-04 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

Cancer Discovery
2023-05-04 | Journal article
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-04-04 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-04-04 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-04-04 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-03-31 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-03-31 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Supplementary Data from Targeted MDM2 Degradation Reveals a New Vulnerability for p53-Inactivated Triple-Negative Breast Cancer

2023-03-31 | Preprint
Contributors: Clare M. Adams; Ramkrishna Mitra; Youcai Xiao; Peter Michener; Juan Palazzo; Allen Chao; Jitendra Gour; Joel Cassel; Joseph M. Salvino; Christine M. Eischen
Source: check_circle
Crossref

Systematic lncRNA mapping to genome-wide co-essential modules uncovers cancer dependency on uncharacterized lncRNAs

eLife
2022-06-13 | Journal article
Contributors: Ramkrishna Mitra; Clare M Adams; Christine M Eischen
Source: check_circle
Crossref

Targeting BCL-W and BCL-XL as a therapeutic strategy for Hodgkin lymphoma

Leukemia
2020-03 | Journal article
Contributors: Clare M. Adams; Ramkrishna Mitra; Ashley N. Vogel; Jinglan Liu; Jerald Z. Gong; Christine M. Eischen
Source: check_circle
Crossref

Pan-cancer analysis reveals cooperativity of both strands of microRNA that regulate tumorigenesis and patient survival

Nature Communications
2020-02-20 | Journal article
Contributors: Ramkrishna Mitra; Clare M. Adams; Wei Jiang; Evan Greenawalt; Christine M. Eischen
Source: check_circle
Crossref

IL-33 is a cell-intrinsic regulator of fitness during early B cell development

Journal of Immunology
2019 | Journal article
EID:

2-s2.0-85071998861

Contributors: Stier, M.T.; Mitra, R.; Nyhoff, L.E.; Goleniewska, K.; Zhang, J.; Puccetti, M.V.; Casanova, H.C.; Seegmiller, A.C.; Newcomb, D.C.; Kendall, P.L. et al.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier
grade
Preferred source (of 2)‎

Targeting of SGK1 by miR-576-3p inhibits lung adenocarcinoma migration and invasion

Molecular Cancer Research
2019 | Journal article
EID:

2-s2.0-85059494901

Contributors: Greenawalt, E.J.; Edmonds, M.D.; Jain, N.; Adams, C.M.; Mitra, R.; Eischen, C.M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

BCL-W has a fundamental role in B cell survival and lymphomagenesis

Journal of Clinical Investigation
2017 | Journal article
EID:

2-s2.0-85014095348

Contributors: Adams, C.M.; Kim, A.S.; Mitra, R.; Choi, J.K.; Gong, J.Z.; Eischen, C.M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Decoding critical long non-coding RNA in ovarian cancer epithelial-to-mesenchymal transition

Nature Communications
2017 | Journal article
EID:

2-s2.0-85034577447

Contributors: Mitra, R.; Chen, X.; Greenawalt, E.J.; Maulik, U.; Jiang, W.; Zhao, Z.; Eischen, C.M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier
grade
Preferred source (of 2)‎

Mdm2 is required for survival and growth of p53-deficient cancer cells

Cancer Research
2017 | Journal article
EID:

2-s2.0-85023779637

Contributors: Feeley, K.P.; Adams, C.M.; Mitra, R.; Eischen, C.M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Non-Hodgkin and Hodgkin lymphomas select for overexpression of BCLW

Clinical Cancer Research
2017 | Journal article
EID:

2-s2.0-85034822612

Contributors: Adams, C.M.; Mitra, R.; Gong, J.Z.; Eischen, C.M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Haploinsufficiency of the Myc regulator Mtbp extends survival and delays tumor development in aging mice

Aging
2016 | Journal article
EID:

2-s2.0-84995545581

Contributors: Grieb, B.C.; Boyd, K.; Mitra, R.; Eischen, C.M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

MicroRNA-31 initiates lung tumorigenesis and promotes mutant KRAS-driven lung cancer

Journal of Clinical Investigation
2016 | Journal article
EID:

2-s2.0-84956638560

Contributors: Edmonds, M.D.; Boyd, K.L.; Moyo, T.; Mitra, R.; Duszynski, R.; Arrate, M.P.; Chen, X.; Zhao, Z.; Blackwell, T.S.; Andl, T. et al.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types

Briefings in Bioinformatics
2016 | Journal article
EID:

2-s2.0-85030323389

Contributors: Jiang, W.; Mitra, R.; Lin, C.-C.; Wang, Q.; Cheng, F.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

The homing and inhibiting effects of hNSCs-BMP4 on human glioma stem cells

Oncotarget
2016 | Journal article
EID:

2-s2.0-84975503273

Contributors: Liu, S.; Yin, F.; Zhao, M.; Zhou, C.; Ren, J.; Huang, Q.; Zhao, Z.; Mitra, R.; Fan, W.; Fan, M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

The potential roles of long noncoding RNAs (lncRNA) in glioblastoma development

Molecular Cancer Therapeutics
2016 | Journal article
EID:

2-s2.0-85008395161

Contributors: Liu, S.; Mitra, R.; Zhao, M.-M.; Fan, W.; Eischen, C.M.; Yin, F.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

TSGene 2.0: An updated literature-based knowledgebase for Tumor Suppressor Genes

Nucleic Acids Research
2016 | Journal article
EID:

2-s2.0-84976898464

Contributors: Zhao, M.; Kim, P.; Mitra, R.; Zhao, J.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

A cross-cancer differential co-expression network reveals microRNA-regulated oncogenic functional modules

Molecular BioSystems
2015 | Journal article
EID:

2-s2.0-84947086982

Contributors: Lin, C.-C.; Mitra, R.; Cheng, F.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: a lung cancer study

RNA (New York, N.Y.)
2015 | Journal article
EID:

2-s2.0-85003053932

Contributors: Mitra, R.; Lin, C.-C.; Eischen, C.M.; Bandyopadhyay, S.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

MBSTAR: Multiple instance learning for predicting specific functional binding sites in microRNA targets

Scientific Reports
2015 | Journal article
EID:

2-s2.0-84922932221

Contributors: Bandyopadhyay, S.; Ghosh, D.; Mitra, R.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

MicroRNA regulation in cancer: One arm or two arms?

International Journal of Cancer
2015 | Journal article
EID:

2-s2.0-84936847315

Contributors: Mitra, R.; Sun, J.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers

Scientific Reports
2015 | Journal article
EID:

2-s2.0-84936976648

Contributors: Lin, C.-C.; Jiang, W.; Mitra, R.; Cheng, F.; Yu, H.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

A tri-component conservation strategy reveals highly confident microRNA-mRNA interactions and evolution of microRNA regulatory networks

PLoS ONE
2014 | Journal article
EID:

2-s2.0-84904634899

Contributors: Lin, C.-C.; Mitra, R.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Algorithms for network-based identification of differential regulators from transcriptome data: a systematic evaluation

Science China Life Sciences
2014 | Journal article
EID:

2-s2.0-84922084785

Contributors: Yu, H.; Mitra, R.; Yang, J.; Li, Y.Y.; Zhao, Z.M.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Reproducible combinatorial regulatory networks elucidate novel oncogenic microRNAs in non-small cell lung cancer

RNA
2014 | Journal article
EID:

2-s2.0-84904290632

Contributors: Mitra, R.; Edmonds, M.D.; Sun, J.; Zhao, M.; Yu, H.; Eischen, C.M.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

The oncogenic and prognostic potential of eight microRNAs identified by a synergetic regulatory network approach in lung cancer

International Journal of Computational Biology and Drug Design
2014 | Journal article
EID:

2-s2.0-84920074943

Contributors: Mitra, R.; Zhao, Z.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

MultiMiTar: A novel multi objective optimization based miRNA-target prediction method

PLoS ONE
2011 | Journal article
EID:

2-s2.0-80052842349

Contributors: Mitra, R.; Bandyopadhyay, S.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Development of the human cancer microRNA network

Silence
2010 | Journal article
EID:

2-s2.0-77953358008

Contributors: Bandyopadhyay, S.; Mitra, R.; Maulik, U.; Zhang, M.Q.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

SFSSClass: An integrated approach for miRNA based tumor classification

BMC Bioinformatics
2010 | Journal article
EID:

2-s2.0-75149150418

Contributors: Mitra, R.; Bandyopadhyay, S.; Maulik, U.; Zhang, M.Q.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

A parallel pairwise local sequence alignment algorithm

IEEE Transactions on Nanobioscience
2009 | Journal article
EID:

2-s2.0-68949106265

Contributors: Bandyopadhyay, S.; Mitra, R.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

Improvement of microRNA target prediction using an enhanced feature set: A machine learning approach

2009 IEEE International Advance Computing Conference, IACC 2009
2009 | Conference paper
EID:

2-s2.0-66249127256

Contributors: Mitra, R.; Bandyopadhyay, S.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier

TargetMiner: MicroRNA target prediction with systematic identification of tissue-specific negative examples

Bioinformatics
2009 | Journal article
EID:

2-s2.0-70350000602

Contributors: Bandyopadhyay, S.; Mitra, R.
Source: Self-asserted source
ramkrishna mitra via Scopus - Elsevier