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Institut Pasteur: Paris, FR

2023-11 to present | CR CNRS (UMR3525)
Employment
Source: Self-asserted source
Jean Cury

Works (21)

Viperin immunity evolved across the tree of life through serial innovations on a conserved scaffold

2023-09-13 | Preprint
DOI: 10.1101/2023.09.13.557418
Contributors: H Shomar; H Georjon; Y Feng; B Olympio; F Tesson; J Cury; F Wu; A Bernheim
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Crossref

dnadna: a deep learning framework for population genetics inference

Bioinformatics
2023-01-01 | Journal article
DOI: 10.1093/bioinformatics/btac765
Contributors: Théophile Sanchez; Erik Madison Bray; Pierre Jobic; Jérémy Guez; Anne-Catherine Letournel; Guillaume Charpiat; Jean Cury; Flora Jay; Janet Kelso
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Crossref

Conservation of antiviral systems across domains of life reveals novel immune mechanisms in humans

2022-12-12 | Preprint
DOI: 10.1101/2022.12.12.520048
Contributors: Jean Cury; Ernest Mordret; Veronica Hernandez Trejo; Florian Tesson; Gal Ofir; Enzo Z. Poirier; Aude Bernheim
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Crossref

A new route for integron cassette dissemination among bacterial genomes

2022-09-13 | Preprint
DOI: 10.1101/2022.09.11.507474
Contributors: Céline Loot; Gael A. Millot; Egill Richard; Claire Vit; Baptiste Darracq; Vincent Parissi; Frédéric Lemoine; Théophile Niault; Jean Cury; Eduardo PC Rocha et al.
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Crossref

Cultural transmission of reproductive success impacts genomic diversity, coalescent tree topologies and demographic inferences

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2022-05-26 | Preprint
DOI: 10.1101/2022.05.25.493366
Contributors: Jérémy Guez; guillaume achaz; François Bienvenu; Jean Cury; Bruno Toupance; Évelyne Heyer; Flora Jay; Frederic Austerlitz
Source: Self-asserted source
Jean Cury

IntegronFinder 2.0: identification and analysis of integrons across Bacteria, with a focus on antibiotic resistance in Klebsiella

2022-03-01 | Preprint
DOI: 10.1101/2022.02.28.482270
Contributors: Bertrand Néron; Eloi Littner; Matthieu Haudiquet; Amandine Perrin; Jean Cury; Eduardo P.C. Rocha
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Crossref

Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation

Molecular Ecology Resources
2021-11 | Journal article
DOI: 10.1111/1755-0998.13224
Contributors: Théophile Sanchez; Jean Cury; Guillaume Charpiat; Flora Jay
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Crossref

Systematic and quantitative view of the antiviral arsenal of prokaryotes

2021-09-02 | Other
DOI: 10.1101/2021.09.02.458658
Contributors: Florian Tesson; Alexandre Hervé; Marie Touchon; Camille d’Humières; Jean Cury; Aude Bernheim
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Crossref

Simulation of bacterial populations with SLiM

2020-09-29 | Preprint
DOI: 10.1101/2020.09.28.316869
Contributors: Jean Cury; Benjamin C. Haller; Guillaume Achaz; Flora Jay
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Crossref

Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement

Science Advances
2020-07-24 | Journal article
DOI: 10.1126/sciadv.aay2922
Contributors: Aleksandra Nivina; Maj Svea Grieb; Céline Loot; David Bikard; Jean Cury; Laila Shehata; Juliana Bernardes; Didier Mazel
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Crossref

Author Correction: The chromosomal organization of horizontal gene transfer in bacteria

Nature Communications
2020-02-26 | Journal article
DOI: 10.1038/s41467-020-15091-5
Contributors: Pedro H. Oliveira; Marie Touchon; Jean Cury; Eduardo P. C. Rocha
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Crossref

Deep learning for population size history inference: design, comparison and combination with approximate Bayesian computation

2020-01-20 | Preprint
DOI: 10.1101/2020.01.20.910539
Contributors: Théophile Sanchez; Jean Cury; Guillaume Charpiat; Flora Jay
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Crossref

A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach

Scientific Reports
2019-08-05 | Journal article
DOI: 10.1038/s41598-019-47656-w
Contributors: Camille d’Humières; Marie Touchon; Sara Dion; Jean Cury; Amine Ghozlane; Marc Garcia-Garcera; Christiane Bouchier; Laurence Ma; Erick Denamur; Eduardo P.C.Rocha
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Crossref

Host Range and Genetic Plasticity Explain the Coexistence of Integrative and Extrachromosomal Mobile Genetic Elements

Molecular Biology and Evolution
2018-09-01 | Journal article
DOI: 10.1093/molbev/msy123
Contributors: Jean Cury; Pedro H Oliveira; Fernando de la Cruz; Eduardo P C Rocha; Nicole T Perna
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Crossref

The chromosomal organization of horizontal gene transfer in bacteria

Nature Communications
2017-10-10 | Journal article
DOI: 10.1038/s41467-017-00808-w
Contributors: Pedro H. Oliveira; Marie Touchon; Jean Cury; Eduardo P. C. Rocha
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Crossref

Integrative and conjugative elements and their hosts: composition, distribution and organization

Nucleic Acids Research
2017-09-06 | Journal article
DOI: 10.1093/nar/gkx607
Contributors: Jean Cury; Marie Touchon; Eduardo P. C. Rocha
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Crossref

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain

Nature Communications
2017-05-24 | Journal article
DOI: 10.1038/ncomms15483
Contributors: Amandine Perrin; Elise Larsonneur; Ainsley C. Nicholson; David J. Edwards; Kristin M. Gundlach; Anne M. Whitney; Christopher A. Gulvik; Melissa E. Bell; Olaya Rendueles; Jean Cury et al.
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Crossref

Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic Capacitance.

2017-03 | Journal article
DOI: 10.1128/mbio.02296-16
PMID: 28351923
PMC: PMC5371416
Contributors: Loot C; Nivina A; Cury J; Escudero JA; Ducos-Galand M; Bikard D; Rocha EP; Mazel D
Source: Self-asserted source
Jean Cury via Europe PubMed Central

Identification and analysis of integrons and cassette arrays in bacterial genomes

Nucleic Acids Research
2016-06-02 | Journal article
DOI: 10.1093/nar/gkw319
Contributors: Jean Cury; Thomas Jové; Marie Touchon; Bertrand Néron; Eduardo PC Rocha
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Crossref
grade
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Identification of protein secretion systems in bacterial genomes.

2016-03 | Journal article
DOI: 10.1038/srep23080
PMID: 26979785
PMC: PMC4793230
Contributors: Abby SS; Cury J; Guglielmini J; Néron B; Touchon M; Rocha EP
Source: Self-asserted source
Jean Cury via Europe PubMed Central

The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

Genome Biology and Evolution
2014-10 | Journal article
DOI: 10.1093/gbe/evu225
Contributors: M. Touchon; J. Cury; E.-J. Yoon; L. Krizova; G. C. Cerqueira; C. Murphy; M. Feldgarden; J. Wortman; D. Clermont; T. Lambert et al.
Source: Self-asserted source
Jean Cury via Crossref Metadata Search
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