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ResearcherID: I-2049-2013
Loop profile: 274744

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Employment (8)

Centro Andaluz de Biología Molecular y Medicina Regenerativa: Seville, ES

2023-10-06 to present | Investigador Científico CSIC - Group leader (Genome Biology)
Employment
Source: Self-asserted source
Daniel Rico

Newcastle University: Newcastle upon Tyne, GB

2023-08-01 to 2023-10-05 | Senior Lecturer (Biosciences Institute)
Employment
Source: Self-asserted source
Daniel Rico

Newcastle University: Newcastle upon Tyne, GB

2021-09-01 to 2023-07-31 | Lecturer in Computational Biology (Biosciences Institute)
Employment
Source: Self-asserted source
Daniel Rico

Newcastle University: Newcastle upon Tyne, GB

2020-10-01 to 2021-08-31 | Tenured Research Group Leader - NU Research Fellow (Biosciences Institute)
Employment
Source: Self-asserted source
Daniel Rico

Newcastle University: Newcastle upon Tyne, GB

2016-09-01 to 2020-09-30 | Tenure-track Junior Group Leader - Newcastle University Research Fellow (Biosciences Institute)
Employment
Source: Self-asserted source
Daniel Rico

Spanish National Cancer Research Centre: Madrid, ES

2012-01 to 2016-08 | Staff scientist (Structural Biology and Biocomputing)
Employment
Source: Self-asserted source
Daniel Rico

Spanish National Cancer Research Centre: Madrid, ES

2007-06 to 2012-01 | Postdoctoral Research Associate (Structural Biology and Biocomputing)
Employment
Source: Self-asserted source
Daniel Rico

Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III: Madrid, ES

2003-05-01 to 2007-04-31 | PhD Student
Employment
Source: Self-asserted source
Daniel Rico

Works (50 of 63)

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Page 1 of 2

Evolutionarily conserved enhancer-associated features within the MYEOV locus suggest a regulatory role for this non-coding DNA region in cancer

Frontiers In Cell and Developmental Biology
2024-07-30 | Journal article | Author
DOI: 10.3389/fcell.2024.1294510
SOURCE-WORK-ID:

CSIC-GB854733

HANDLE: 10261/368048
EID:

2-s2.0-85201108265

WOSUID:

WOS:001289733700001

PMID: 39139450
Part of ISSN: 2296-634X
Contributors: Davidson, Brigid S. A.; Arcila-Galvis, Juliana Estefania; Trevisan-Herraz, Marco; Mikulasova, Aneta; Brackley, Chris A.; Russell, Lisa J.; Daniel Rico
Source: check_circle
C.S.I.C. - Consejo Superior de Investigaciones Científicas

Evolutionary analysis of gene ages across TADs associates chromatin topology with whole-genome duplications

Cell Reports
2024-04 | Journal article
DOI: 10.1016/j.celrep.2024.113895
Contributors: Caelinn James; Marco Trevisan-Herraz; David Juan; Daniel Rico
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Crossref
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Release of Histone H3K4-reading transcription factors from chromosomes in mitosis is independent of adjacent H3 phosphorylation.

Nature communications
2023-11-09 | Journal article
DOI: 10.1038/s41467-023-43115-3
PMID: 37945563
PMC: PMC10636195
Contributors: Rebecca Harris; Maninder Heer; Levasseur MD; Tyrell Cartwright; Weston B; Jennifer Mitchell; Jonathan Coxhead; Luke Gaughan; Prendergast L; Daniel Rico et al.
Source: Self-asserted source
Daniel Rico
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Broad H3K4me3 domains: Maintaining cellular identity and their implication in super‐enhancer hijacking

BioEssays
2023-10 | Journal article
DOI: 10.1002/bies.202200239
Contributors: Daniel Kent; Letizia Marchetti; Aneta Mikulasova; Lisa J. Russell; Daniel Rico
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The discovery of an evolutionarily conserved enhancer within the MYEOV locus suggests an unexpected role for this non-coding region in cancer

2023-09-19 | Preprint
DOI: 10.1101/2023.09.18.558245
Contributors: Brigid SA Davidson; Juliana Estefania Arcila-Galvis; Marco Trevisan-Herraz; Aneta Mikulasova; Chris A Brackley; Lisa J Russell; Daniel Rico
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Crossref

Esearch3D: propagating gene expression in chromatin networks to illuminate active enhancers

Nucleic Acids Research
2023-06-09 | Journal article
DOI: 10.1093/nar/gkad229
Contributors: Maninder Heer; Luca Giudice; Claudia Mengoni; Rosalba Giugno; Daniel Rico
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Epigenomic translocation of H3K4me3 broad domains over oncogenes following hijacking of super-enhancers

European Journal of Human Genetics
2023-05-11 | Conference paper | Author
SOURCE-WORK-ID:

CSIC-GB822505

WOSUID:

WOS:001050507002266

Part of ISSN: 1018-4813
Contributors: Mikulasova, Aneta; Kent, Dan; Trevisan-Herraz, Marco; Karataraki, Nefeli; Fung, Kent F. M.; Ashby, Cody; Cieslak, Agata; Yaccoby, Shmuel; van Rhee, Frits; Zangari, Maurizio et al.
Source: check_circle
C.S.I.C. - Consejo Superior de Investigaciones Científicas

miRNA Expression in Fibroblastic Foci within Idiopathic Pulmonary Fibrosis Lungs Reveals Novel Disease-Relevant Pathways

The American Journal of Pathology
2023-04 | Journal article
DOI: 10.1016/j.ajpath.2022.12.015
Contributors: Laura Sabater; Jean B. Gossart; Inmaculada Hernandez; Daniel Rico; Andy Blanchard; Lee A. Borthwick; Andrew J. Fisher; Joaquim Majo; Kasim Jiwa; Amy Collins et al.
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Crossref
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Release of Histone H3K4-reading transcription factors from chromosomes in mitosis is independent of adjacent H3 phosphorylation

2023-03-01 | Preprint
DOI: 10.1101/2023.02.28.530230
Contributors: Rebecca J. Harris; Maninder Heer; Mark D. Levasseur; Tyrell N. Cartwright; Bethany Weston; Jennifer L. Mitchell; Jonathan M. Coxhead; Luke Gaughan; Lisa Prendergast; Daniel Rico et al.
Source: check_circle
Crossref

Esearch3D: Propagating gene expression in chromatin networks to illuminate active enhancers

2022-08-06 | Preprint
DOI: 10.1101/2022.08.04.502774
Contributors: Maninder Heer; Luca Giudice; Claudia Mengoni; Rosalba Giugno; Daniel Rico
Source: check_circle
Crossref

Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes

Genome Research
2022-07 | Journal article
DOI: 10.1101/gr.266924.120
Part of ISSN: 1088-9051
Part of ISSN: 1549-5469
Contributors: Daniel Rico; Mohamed BELHOCINE; Mathieu Simonin; José David Abad Flores; Agata Cieslak; Iris Manosalva; Lydie Pradel; Charlotte Smith; Eve-Lyne Mathieu; Guillaume Charbonnier et al.
Source: Self-asserted source
Daniel Rico
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Epigenomic translocation of H3K4me3 broad domains over oncogenes following hijacking of super-enhancers

Genome Research
2022-07 | Journal article
DOI: 10.1101/gr.276042.121
Part of ISSN: 1088-9051
Part of ISSN: 1549-5469
Contributors: Daniel Rico; Aneta Mikulasova; Daniel Kent; Marco Trevisan-Herraz; Nefeli Karataraki; Kent T.M. Fung; Cody Ashby; Agata Cieslak; Shmuel Yaccoby; Frits van Rhee et al.
Source: Self-asserted source
Daniel Rico
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High-resolution simulations of chromatin folding at genomic rearrangements in malignant B cells provide mechanistic insights into proto-oncogene deregulation

Genome Research
2022-07 | Journal article | Author
DOI: 10.1101/gr.276028.121
Part of ISSN: 1088-9051
Part of ISSN: 1549-5469
Contributors: Daniel Rico; Daniel Kent; Nefeli Karataraki; Aneta Mikulasova; Rolando Berlinguer Palmini; Brian A Walker; Biola M. Javierre; Lisa Russell; Chris Brackley
Source: Self-asserted source
Daniel Rico
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GATA2 deficiency phenotype associated with tandem duplication of GATA2 and overexpression of GATA2-AS1

Blood Advances
2021-12-28 | Journal article | Author
DOI: 10.1182/bloodadvances.2021005217
Part of ISSN: 2473-9529
Part of ISSN: 2473-9537
Contributors: Preeti Singh; Maninder Heer; Anastasia Resteu; Aneta Mikulasova; Mojgan Reza; Laetitia Largeaud; Stéphanie Dufrechou; Naïs Prade; Rachel E. Dickinson; Jacinta Bustamante et al.
Source: Self-asserted source
Daniel Rico
grade
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Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas

Leukemia
2021-07 | Journal article | Author
DOI: 10.1038/s41375-021-01251-z
Part of ISSN: 0887-6924
Part of ISSN: 1476-5551
Contributors: Daniel Hübschmann; Kortine Kleinheinz; Rabea Wagener; Stephan H. Bernhart; Cristina López; Umut H. Toprak; Stephanie Sungalee; Naveed Ishaque; Helene Kretzmer; Markus Kreuz et al.
Source: Self-asserted source
Daniel Rico
grade
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Evolutionary analysis of gene ages across TADs associates chromatin topology with whole genome duplications

2021-06-11 | Preprint
DOI: 10.1101/2021.06.11.448047
Contributors: Caelinn James; Marco Trevisan-Herraz; David Juan; Daniel Rico
Source: check_circle
Crossref

Resolution of R-loops by INO80 promotes DNA replication and maintains cancer cell proliferation and viability

Nature Communications
2020-09-10 | Journal article
DOI: 10.1038/s41467-020-18306-x
Contributors: Lisa Prendergast; Urszula L. McClurg; Rossitsa Hristova; Rolando Berlinguer-Palmini; Sarah Greener; Katie Veitch; Inmaculada Hernandez; Philippe Pasero; Daniel Rico; Jonathan M. G. Higgins et al.
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Programmed 'disarming' of the neutrophil proteome reduces the magnitude of inflammation.

Nature immunology
2020-01-13 | Journal article
DOI: 10.1038/s41590-019-0571-2
PMID: 31932813
Source: Self-asserted source
Daniel Rico
grade
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Chromatin regulation by Histone H4 acetylation at Lysine 16 during cell death and differentiation in the myeloid compartment

Nucleic Acids Research
2019-06-04 | Journal article | Author
DOI: 10.1093/nar/gkz195
Part of ISSN: 0305-1048
Part of ISSN: 1362-4962
Contributors: Rocio G Urdinguio; Virginia Lopez; Gustavo F Bayón; Rafael Diaz de la Guardia; Marta I Sierra; Estela García-Toraño; Raúl F Perez; María G García; Antonella Carella; Patricia C Pruneda et al.
Source: Self-asserted source
Daniel Rico
grade
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Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture

Biotechnology and Bioengineering
2019-03 | Journal article
DOI: 10.1002/bit.26891
Part of ISSN: 0006-3592
Part of ISSN: 1097-0290
Contributors: Daniel Rico; Inmaculada Hernandez; Heena Dhiman; Gerald Klanert; Vaibhav Jadhav; Norbert Auer; Michael Hanscho; Martina Baumann; Anna Esteve‐Codina; Marc Dabad et al.
Source: Self-asserted source
Daniel Rico
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Intronic CNVs and gene expression variation in human populations

PLOS Genetics
2019-01-24 | Journal article
DOI: 10.1371/journal.pgen.1007902
Contributors: Maria Rigau; Colin Semple; David Juan; Alfonso Valencia; Daniel Rico
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Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils

Cell Reports
2018-09 | Journal article
DOI: 10.1016/j.celrep.2018.08.018
Part of ISSN: 2211-1247
Contributors: Daniel Rico; Luigi Grassi; Farzin Pourfarzad; Sebastian Ullrich; Angelika Merkel; Felipe Were; Enrique Carrillo-de-Santa-Pau; Guoqiang Yi; Ida H. Hiemstra; Anton T.J. Tool et al.
Source: Self-asserted source
Daniel Rico
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Protection against gamma-radiation injury by protein tyrosine phosphatase 1B

Redox Biology
2018-07 | Journal article
DOI: 10.1016/j.redox.2018.04.018
Part of ISSN: 2213-2317
Contributors: Daniel Rico; Marina Mojena; María Pimentel-Santillana; Adrián Povo-Retana; Victoria Fernández-García, PhD; Silvia González-Ramos; Patricia Rada; Alberto Tejedor; Daniel Rico; Paloma Martín-Sanz et al.
Source: Self-asserted source
Daniel Rico
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Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types

Genome Biology
2017-12 | Journal article
DOI: 10.1186/s13059-017-1156-8
Part of ISSN: 1474-760X
Contributors: Daniel Rico; Simone Ecker; BLUEPRINT Consortium; Lu Chen; Vera Pancaldi; Frederik O. Bagger; José María Fernández; Enrique Carrillo de Santa Pau; David Juan; Alice L. Mann et al.
Source: Self-asserted source
Daniel Rico
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Automatic identification of informative regions with epigenomic changes associated to hematopoiesis

Nucleic Acids Research
2017-09-19 | Journal article
DOI: 10.1093/nar/gkx618
Contributors: Enrique Carrillo-de-Santa-Pau; David Juan; Vera Pancaldi; Felipe Were; Ignacio Martin-Subero; Daniel Rico; Alfonso Valencia
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Crossref
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Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

Genome Biology
2016-12 | Journal article
DOI: 10.1186/s13059-016-1003-3
Contributors: Vera Pancaldi; Enrique Carrillo-de-Santa-Pau; Biola Maria Javierre; David Juan; Peter Fraser; Mikhail Spivakov; Alfonso Valencia; Daniel Rico
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Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.

2016-11 | Journal article
DOI: 10.1016/j.cell.2016.10.026
PMID: 27863251
Contributors: Chen L; Ge B; Casale FP; Vasquez L; Kwan T; Garrido-Martín D; Watt S; Yan Y; Kundu K; Ecker S et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

2016-11 | Journal article
DOI: 10.1016/j.cell.2016.10.042
PMID: 27863252
Contributors: Astle WJ; Elding H; Jiang T; Allen D; Ruklisa D; Mann AL; Mead D; Bouman H; Riveros-Mckay F; Kostadima MA et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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The BLUEPRINT Data Analysis Portal.

2016-11 | Journal article
DOI: 10.1016/j.cels.2016.10.021
PMID: 27863955
Contributors: Fernández JM; de la Torre V; Richardson D; Royo R; Puiggròs M; Moncunill V; Fragkogianni S; Clarke L; BLUEPRINT Consortium; Flicek P et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery.

2016-11 | Journal article
DOI: 10.1016/j.cell.2016.11.007
PMID: 27863232
Contributors: Stunnenberg HG; International Human Epigenome Consortium; Hirst M
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time.

2016-04 | Journal article
PMID: 27072894
Contributors: Feichtinger J; Hernández I; Fischer C; Hanscho M; Auer N; Hackl M; Jadhav V; Baumann M; Krempl PM; Schmidl C et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs.

2016-02 | Journal article
DOI: 10.1016/j.celrep.2016.01.008
PMID: 26832418
Contributors: Juan D; Perner J; Carrillo de Santa Pau E; Marsili S; Ochoa D; Chung HR; Vingron M; Rico D; Valencia A
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Higher gene expression variability in the more aggressive subtype of chronic lymphocytic leukemia.

2015 | Journal article
DOI: 10.1186/s13073-014-0125-z
PMID: 25632304
PMC: PMC4308895
Contributors: Ecker S; Pancaldi V; Rico D; Valencia A
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies.

2015 | Journal article
DOI: 10.1186/s12864-015-1450-3
PMID: 25997541
PMC: PMC4470036
Contributors: Earl J; Rico D; Carrillo-de-Santa-Pau E; Rodríguez-Santiago B; Méndez-Pertuz M; Auer H; Gómez G; Grossman HB; Pisano DG; Schulz WA et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control.

2015-11 | Journal article
DOI: 10.1038/ng.3413
PMID: 26437030
Contributors: Kretzmer H; Bernhart SH; Wang W; Haake A; Weniger MA; Bergmann AK; Betts MJ; Carrillo-de-Santa-Pau E; Doose G; Gutwein J et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Whole-genome fingerprint of the DNA methylome during human B cell differentiation.

2015-07 | Journal article
DOI: 10.1038/ng.3291
PMID: 26053498
Contributors: Kulis M; Merkel A; Heath S; Queirós AC; Schuyler RP; Castellano G; Beekman R; Raineri E; Esteve A; Clot G et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Deletion at 6q24.2-26 predicts longer survival of high-grade serous epithelial ovarian cancer patients.

2015-02 | Journal article
DOI: 10.1016/j.molonc.2014.09.010
PMID: 25454820
Contributors: Kamieniak MM; Rico D; Milne RL; Muñoz-Repeto I; Ibáñez K; Grillo MA; Domingo S; Borrego S; Cazorla A; García-Bueno JM et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Pivotal role of protein tyrosine phosphatase 1B (PTP1B) in the macrophage response to pro-inflammatory and anti-inflammatory challenge.

2014 | Journal article
DOI: 10.1038/cddis.2014.90
PMID: 24625984
PMC: PMC3973223
Contributors: Través PG; Pardo V; Pimentel-Santillana M; González-Rodríguez Á; Mojena M; Rico D; Montenegro Y; Calés C; Martín-Sanz P; Valverde AM et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Transcriptional dissection of pancreatic tumors engrafted in mice.

2014 | Journal article
DOI: 10.1186/gm544
PMID: 24739241
PMC: PMC4062047
Contributors: Martinez-Garcia R; Juan D; Rausell A; Muñoz M; Baños N; Menéndez C; Lopez-Casas PP; Rico D; Valencia A; Hidalgo M
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Characterization of the DNA Methylome during Human B-Cell Differentiation

Blood
2014-12-06 | Conference paper | Author
SOURCE-WORK-ID:

CSIC-GB822534

WOSUID:

WOS:000349233806003

Part of ISSN: 0006-4971
Contributors: Kulis, Marta; Heath, Simon; Castellano, Giancarlo; Beekman, Renee; Merkel, Angelika; Raineri, Emanuele; Esteve, Anna; Queiros, Ana C.; Clot, Guillem; Schuyler, Ronald et al.
Source: check_circle
C.S.I.C. - Consejo Superior de Investigaciones Científicas

Colorectal cancer classification based on gene expression is not associated with FOLFIRI response.

2014-11 | Journal article
DOI: 10.1038/nm.3701
PMID: 25375918
Contributors: Martinez-Garcia R; Lopez-Casas PP; Rico D; Valencia A; Hidalgo M
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Anti-inflammatory actions of acanthoic acid-related diterpenes involve activation of the PI3K p110γ/δ subunits and inhibition of NF-κB.

2014-08 | Journal article
DOI: 10.1016/j.chembiol.2014.06.005
PMID: 25065531
Contributors: Través PG; Pimentel-Santillana M; Rico D; Rodriguez N; Miethke T; Castrillo A; Theodorakis EA; Martín-Sanz P; Palladino MA; Boscá L
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia.

2014-02 | Journal article
DOI: 10.1101/gr.152132.112
PMID: 24265505
PMC: PMC3912412
Contributors: Ferreira PG; Jares P; Rico D; Gómez-López G; Martínez-Trillos A; Villamor N; Ecker S; González-Pérez A; Knowles DG; Monlong J et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Late-replicating CNVs as a source of new genes.

2013 | Journal article
DOI: 10.1242/bio.20136924
PMID: 24285712
PMC: PMC3863426
Contributors: Juan D; Rico D; Marques-Bonet T; Fernández-Capetillo O; Valencia A
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy.

2013-12 | Journal article
DOI: 10.1038/ng.2799
PMID: 24121791
PMC: PMC3840052
Contributors: Balbás-Martínez C; Sagrera A; Carrillo-de-Santa-Pau E; Earl J; Márquez M; Vazquez M; Lapi E; Castro-Giner F; Beltran S; Bayés M et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Subfunctionalization via adaptive evolution influenced by genomic context: the case of histone chaperones ASF1a and ASF1b.

2013-08 | Journal article
DOI: 10.1093/molbev/mst086
PMID: 23645555
Contributors: Abascal F; Corpet A; Gurard-Levin ZA; Juan D; Ochsenbein F; Rico D; Valencia A; Almouzni G
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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DNA copy number profiling reveals extensive genomic loss in hereditary BRCA1 and BRCA2 ovarian carcinomas.

2013-04 | Journal article
DOI: 10.1038/bjc.2013.141
PMID: 23558894
PMC: PMC3668473
Contributors: Kamieniak MM; Muñoz-Repeto I; Rico D; Osorio A; Urioste M; García-Donas J; Hernando S; Robles-Díaz L; Ramón Y Cajal T; Cazorla A et al.
Source: Self-asserted source
Daniel Rico via Europe PubMed Central
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Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia

2012 | Journal article
DOI: 10.1038/ng.2443
Part of ISSN: 1061-4036
Source: Self-asserted source
Daniel Rico via Crossref Metadata Search
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Assessment of copy number variation using the Illumina Infinium 1M SNP-array: a comparison of methodological approaches in the Spanish Bladder Cancer/EPICURO study

2011 | Journal article
DOI: 10.1002/humu.21398
Part of ISSN: 1059-7794
Source: Self-asserted source
Daniel Rico via Crossref Metadata Search
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Cohesin organizes chromatin loops at DNA replication factories

2010 | Journal article
DOI: 10.1101/gad.608210
Part of ISSN: 0890-9369
Source: Self-asserted source
Daniel Rico via Crossref Metadata Search
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