Personal information

Other IDs

Scopus Author ID: 55767504300

Keywords

machine learning, statistic, artificial neural network

Countries

Germany

Activities

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Employment (1)

University of Oslo: Oslo, Oslo, NO

2018-06-01 to present | Researcher (Department of Immunology)
Employment
Source: Self-asserted source
Rahmad Akbar

Education and qualifications (1)

Universität des Saarlandes: Saarbrucken, Saarland, DE

2014-09-01 to present | PhD (Bioinformatics)
Education
Source: Self-asserted source
Rahmad Akbar

Works (18)

Progress and challenges for the application of machine learning for neglected tropical diseases [version 1; peer review: awaiting peer review]

2023-03-15 | Journal article
DOI: 10.12688/f1000research.129064.1
Part of ISSN: 2046-1402
Funded by GRANT_NUMBER:

FRGS/1/2019/STG05/UKM/03/1
Contributors: ChungYuen Khew; Rahmad Akbar; Norfarhan Mohd-Assaad; Akbar Rahmad; Akbar Rahmad; Akbar Rahmad; Akbar Rahmad; Khew ChungYuen; Mohd-Assaad Norfarhan; Mohd-Assaad Norfarhan et al.
Source: check_circle
F1000

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Cell Reports
2021 | Journal article
DOI: 10.1016/j.celrep.2021.108856
EID:

2-s2.0-85102581207

Part of ISSN: 22111247
Contributors: Akbar, R.; Robert, P.A.; Pavlović, M.; Jeliazkov, J.R.; Snapkov, I.; Slabodkin, A.; Weber, C.R.; Scheffer, L.; Miho, E.; Haff, I.H. et al.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

immuneML: An ecosystem for machine learning analysis of adaptive immune receptor repertoires

bioRxiv
2021 | Other
DOI: 10.1101/2021.03.08.433891
EID:

2-s2.0-85105354498

Part of ISSN: 26928205
Contributors: Pavlović, M.; Scheffer, L.; Motwani, K.; Kanduri, C.; Kompova, R.; Vazov, N.; Waagan, K.; Bernal, F.L.M.; Costa, A.A.; Corrie, B. et al.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

In silico proof of principle of machine learning-based antibody design at unconstrained scale

bioRxiv
2021 | Other
DOI: 10.1101/2021.07.08.451480
EID:

2-s2.0-85112639042

Part of ISSN: 26928205
Contributors: Akbar, R.; Robert, P.A.; Weber, C.R.; Widrich, M.; Frank, R.; Pavlović, M.; Scheffer, L.; Chernigovskaya, M.; Snapkov, I.; Slabodkin, A. et al.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

One billion synthetic 3D-antibody-antigen complexes enable unconstrained machine-learning formalized investigation of antibody specificity prediction

bioRxiv
2021 | Other
DOI: 10.1101/2021.07.06.451258
EID:

2-s2.0-85114374934

Part of ISSN: 26928205
Contributors: Robert, P.A.; Akbar, R.; Frank, R.; Pavlović, M.; Widrich, M.; Snapkov, I.; Chernigovskaya, M.; Scheffer, L.; Slabodkin, A.; Mehta, B.B. et al.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

ImmuneSIM: Tunable multi-feature simulation of B- And T-cell receptor repertoires for immunoinformatics benchmarking

Bioinformatics
2020 | Journal article
DOI: 10.1093/bioinformatics/btaa158
EID:

2-s2.0-85085904556

Part of ISSN: 14602059 13674803
Contributors: Weber, C.R.; Akbar, R.; Yermanos, A.; Pavlović, M.; Snapkov, I.; Sandve, G.K.; Reddy, S.T.; Greiff, V.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

Interorganelle tethering to endocytic organelles determines directional cytokine transport in CD4+ T cells

Journal of Immunology
2020 | Journal article
DOI: 10.4049/jimmunol.2000195
EID:

2-s2.0-85096815477

Part of ISSN: 15506606 00221767
Contributors: Zhou, Y.; Zhao, R.; Schwarz, E.C.; Akbar, R.; Kaba, M.; Pattu, V.; Helms, V.; Rieger, H.; Nunes-Hasler, P.; Qu, B.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

bioRxiv
2019 | Other
DOI: 10.1101/759498
EID:

2-s2.0-85095659399

Part of ISSN: 26928205
Contributors: Akbar, R.; Robert, P.A.; Pavlović, M.; Jeliazkov, J.R.; Snapkov, I.; Slabodkin, A.; Weber, C.R.; Scheffer, L.; Miho, E.; Haff, I.H. et al.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires

Molecular Systems Design & Engineering
2019 | Journal article
DOI: 10.1039/c9me00071b
Part of ISSN: 2058-9689
Source: Self-asserted source
Rahmad Akbar
grade
Preferred source (of 2)‎

Augmenting adaptive immunity: Progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires

arXiv
2019 | Other
EID:

2-s2.0-85095250638

Part of ISSN: 23318422
Contributors: Brown, A.J.; Snapkov, I.; Akbar, R.; Pavlović, M.; Miho, E.; Sandve, G.K.; Greiff, V.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

ImmuneSIM: Tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

bioRxiv
2019 | Other
DOI: 10.1101/759795
EID:

2-s2.0-85095524462

Part of ISSN: 26928205
Contributors: Weber, C.R.; Akbar, R.; Yermanos, A.; Pavlović, M.; Snapkov, I.; Sandve, G.K.; Reddy, S.T.; Greiff, V.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

Inter-Organelle Tethering to Lysosome Determines Directional Cytokine Transport in CD4 <sup>+</sup> T Cells

SSRN
2019 | Other
DOI: 10.2139/ssrn.3507711
EID:

2-s2.0-85109279049

Part of ISSN: 15565068
Contributors: Zhou, Y.; Zhao, R.; Schwarz, E.C.; Akbar, R.; Kaba, M.; Pattu, V.; Helms, V.; Rieger, H.; Nunes-Hasler, P.; Qu, B.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

ALLO: A tool to discriminate and prioritize allosteric pockets.

Chemical biology & drug design
2017-12 | Journal article
DOI: 10.1111/cbdd.13161
PMID: 29250934
Contributors: Akbar R; Helms V
Source: Self-asserted source
Rahmad Akbar via Europe PubMed Central
grade
Preferred source (of 2)‎

ENRI: A tool for selecting structure-based virtual screening target conformations.

Chemical biology & drug design
2017-05 | Journal article
DOI: 10.1111/cbdd.12900
PMID: 27995760
Source: Self-asserted source
Rahmad Akbar via Europe PubMed Central
grade
Preferred source (of 2)‎

Molecular docking studies of a quassinoid and P-glycoprotein

IEEE Symposium on Computers and Informatics, ISCI 2013
2013 | Conference paper
DOI: 10.1109/ISCI.2013.6612391
EID:

2-s2.0-84886549222
Contributors: Sarbini, S.; Nayan, M.N.; Chik, W.W.D.; Radzi, M.M.N.; Akbar, R.; Jusoh, S.A.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

Molecular docking study of a tocotrienol and P-glycoprotein

IEEE Symposium on Computers and Informatics, ISCI 2013
2013 | Conference paper
DOI: 10.1109/ISCI.2013.6612393
EID:

2-s2.0-84886449436
Contributors: Shaharom, R.R.S.; Nayan, M.N.; Radzi, M.M.N.; Akbar, R.; Jusoh, S.A.
Source: Self-asserted source
Rahmad Akbar via Scopus - Elsevier

Stability, orientation and position preference of the stem region (residues 689-703) in Hepatitis C Virus (HCV) envelope glycoprotein E2: a molecular dynamics study.

F1000Research
2013 | Journal article
DOI: 10.12688/f1000research.2-64.v2
PMID: 24555044
PMC: PMC3886794
Source: Self-asserted source
Rahmad Akbar via Europe PubMed Central
grade
Preferred source (of 2)‎

Interaction of ganoderic acid on HIV related target: molecular docking studies.

Bioinformation
2011 | Journal article
DOI: 10.6026/97320630007413
PMID: 22347784
PMC: PMC3280442
Source: Self-asserted source
Rahmad Akbar via Europe PubMed Central
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