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Works (16)

PharaCon: a new framework for identifying bacteriophages via conditional representation learning

Bioinformatics
2025-03-04 | Journal article
DOI: 10.1093/bioinformatics/btaf085
Contributors: Zeheng Bai; Yao-zhong Zhang; Yuxuan Pang; Seiya Imoto; Pier Luigi Martelli
Source: check_circle
Crossref

Human_heart_ST

2024-10-21 | Dataset
DOI: 10.6084/m9.figshare.27270579
SOURCE-WORK-ID:

27270579
Contributors: SciLifeLab SciLifeLab
Source: check_circle
figshare

Visium_FFPE_Human_Breast_Cancer

2024-10-21 | Dataset
DOI: 10.6084/m9.figshare.27265398
SOURCE-WORK-ID:

27265398
Contributors: 10x Genomics
Source: check_circle
figshare

Human oral squamous cell carcinoma (OSCC) dataset -- sample 2

2024-10-20 | Dataset
DOI: 10.6084/m9.figshare.27263433
SOURCE-WORK-ID:

27263433
Contributors: University of Calgary
Source: check_circle
figshare

Slide-Tags human tonsil dataset

2024-10-17 | Dataset
DOI: 10.6084/m9.figshare.27249483
SOURCE-WORK-ID:

27249483
Contributors: Broad Institute of Harvard and MIT
Source: check_circle
figshare

Visium_FFPE_Mouse_Kidney

2024-10-15 | Dataset
DOI: 10.6084/m9.figshare.27230889
SOURCE-WORK-ID:

27230889
Contributors: 10x Genomics
Source: check_circle
figshare

Enhanced spatially resolved transcriptomics analysis by matching between expression profiles and spatial topology

2024-08-19 | Preprint
DOI: 10.1101/2024.08.16.608230
Contributors: Yuxuan Pang; Chunxuan Wang; Yao-zhong Zhang; Zhuo Wang; Seiya Imoto; Tzong-Yi Lee
Source: check_circle
Crossref

A risk assessment framework for multidrug-resistant Staphylococcus aureus using machine learning and mass spectrometry technology

Briefings in Bioinformatics
2023-09-22 | Journal article
DOI: 10.1093/bib/bbad330
Contributors: Zhuo Wang; Yuxuan Pang; Chia-Ru Chung; Hsin-Yao Wang; Haiyan Cui; Ying-Chih Chiang; Jorng-Tzong Horng; Jang-Jih Lu; Tzong-Yi Lee
Source: check_circle
Crossref

Accelerating the Discovery of Anticancer Peptides through Deep Forest Architecture with Deep Graphical Representation

International Journal of Molecular Sciences
2023-02-21 | Journal article
DOI: 10.3390/ijms24054328
Contributors: Lantian Yao; Wenshuo Li; Yuntian Zhang; Junyang Deng; Yuxuan Pang; Yixian Huang; Chia-Ru Chung; Jinhan Yu; Ying-Chih Chiang; Tzong-Yi Lee
Source: check_circle
Crossref

Integrating transformer and imbalanced multi-label learning to identify antimicrobial peptides and their functional activities

Bioinformatics
2022-12-13 | Journal article
DOI: 10.1093/bioinformatics/btac711
Contributors: Yuxuan Pang; Lantian Yao; Jingyi Xu; Zhuo Wang; Tzong-Yi Lee; Pier Luigi Martelli
Source: check_circle
Crossref

dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data

Nucleic Acids Research
2022-01-07 | Journal article
DOI: 10.1093/nar/gkab1080
Contributors: Jhih-Hua Jhong; Lantian Yao; Yuxuan Pang; Zhongyan Li; Chia-Ru Chung; Rulan Wang; Shangfu Li; Wenshuo Li; Mengqi Luo; Renfei Ma et al.
Source: check_circle
Crossref

dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications

Nucleic Acids Research
2022-01-07 | Journal article
DOI: 10.1093/nar/gkab1017
Contributors: Zhongyan Li; Shangfu Li; Mengqi Luo; Jhih-Hua Jhong; Wenshuo Li; Lantian Yao; Yuxuan Pang; Zhuo Wang; Rulan Wang; Renfei Ma et al.
Source: check_circle
Crossref

AVPIden: a new scheme for identification and functional prediction of antiviral peptides based on machine learning approaches

Briefings in Bioinformatics
2021-11-05 | Journal article
DOI: 10.1093/bib/bbab263
Contributors: Yuxuan Pang; Lantian Yao; Jhih-Hua Jhong; Zhuo Wang; Tzong-Yi Lee
Source: check_circle
Crossref

Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies

Briefings in Bioinformatics
2021-03-22 | Journal article
DOI: 10.1093/bib/bbaa423
Part of ISSN: 1467-5463
Part of ISSN: 1477-4054
Source: Self-asserted source
Yuxuan Pang

UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase–substrate interactions

Database
2021-03-08 | Journal article
DOI: 10.1093/database/baab010
Contributors: Zhongyan Li; Siyu Chen; Jhih-Hua Jhong; Yuxuan Pang; Kai-Yao Huang; Shangfu Li; Tzong-Yi Lee
Source: check_circle
Crossref

A 3D Multi-scale Virtual Adversarial Network for False Positive Reduction in Pulmonary Nodule Detection

Proceedings of the 2019 3rd International Conference on Innovation in Artificial Intelligence - ICIAI 2019
2019 | Conference paper
DOI: 10.1145/3319921.3319961
Contributors: Yuxuan Pang; Yunheng Wu; Yuxuan Pang; Peng Cao
Source: Self-asserted source
Yuxuan Pang
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