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Nucleotide sequence databases, Veternaly medicine for companion animals, Genome analysis and annotation
Japan

Biography

Professor Yasukazu Nakamura is a faculty member in the Division of Informatics at National Institute of Genetics (NIG), part of The Research Organization of Information and Systems (ROIS) in Japan, where he leads the Genome Informatics Laboratory. His research focuses on analyzing and annotating various genomes, constructing genome databases, and developing tools and workflows to enhance the quality of genomic data. He has played a crucial role in analyzing microbial, plant, and animal genomes, advancing understanding of genetics at the molecular level. He is also instrumental in managing the DNA Data Bank of Japan (DDBJ), a partner of the International Nucleotide Sequence Database Collaboration (INSDC), one of the world’s largest public repositories of genetic information. As Head of International Collaboration, he promotes the open sharing of nucleotide sequence data, ensuring DDBJ remains an invaluable resource for the global scientific community. He is involved in international collaborations and partnerships, improving genome annotation accuracy, enhancing genome databases' value, and establishing standards for genome analysis and database development.

Activities

Employment (4)

The Graduate University for Advanced Studies, SOKENDAI: Hayama, JP

2023-04-01 to present | Professor (Genetics Program, Graduate Institute for Advanced Studies)
Employment
Source: Self-asserted source
Yasukazu Nakamura

National Institute of Genetics: Mishima, Shizuoka, JP

2009-01-01 to present | Professor (Genome Informatics Laboratory)
Employment
Source: Self-asserted source
Yasukazu Nakamura

The Graduate University for Advanced Studies, SOKENDAI: Hayama, JP

2009-01-01 to 2023-03-31 | Professor (Department of Genetics, School of Life Science)
Employment
Source: Self-asserted source
Yasukazu Nakamura

Kazusa DNA Research Institute: Kisarazu, JP

1996-04-01 to 2008-03-31 | Scientist - Head of Laboratory
Employment
Source: Self-asserted source
Yasukazu Nakamura

Education and qualifications (3)

The Graduate University for Advanced Studies, SOKENDAI: Hayama, JP

1994-04-01 to 1996-03-31 | Ph.D (Department of Genetics, School of Life Science)
Education
Source: Self-asserted source
Yasukazu Nakamura

Kyoto University: Kyoto, JP

1989-04-01 to 1991-03-31 | Master of Agriculture (Department of Agricultual Technology, Graduate School of Agriculture)
Education
Source: Self-asserted source
Yasukazu Nakamura

Shinshu University: Matsumoto, JP

1985-04-01 to 1989-03-31 | bachelor of Agriculture (Department of Agricultural Technology, Faculty of Agriculture)
Education
Source: Self-asserted source
Yasukazu Nakamura

Professional activities (4)

JST: Tokyo, JP

2024-05 to present | Research Area Advisor (PRESTO, Multiscale and Interdisciplinary Approaches to Investigate Mechanisms of Resilience and Diversification across Wide Ranges of Spatiotemporal Metrics)
Invited position
Source: Self-asserted source
Yasukazu Nakamura

The Genome Taxonomy Database (GTDB): Queensland, AU

2023-05 to present | Board member (Scientific Advisory)
Invited position
Source: Self-asserted source
Yasukazu Nakamura

NARO: Tsukuba, JP

2021-12 to present | External Review Committee Member (Core Technology Research Headquarters)
Invited position
Source: Self-asserted source
Yasukazu Nakamura

China National Genomics Data Center: Beijing, CN

2020-01 to present | Science Advisor (Scientific Advisory Board )
Invited position
Source: Self-asserted source
Yasukazu Nakamura

Funding (9)

翻訳開始因子DAP5を軸とした腎糸球体障害の病態理解と応用

2023-04-01 to 2028-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 23H00357
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

Platform for Advanced Genome Science

2022-04-01 to 2028-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 22H04925
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

ベンサミアナタバコのゲノム解析に基づく植物の接木分子基盤解明

2022-04-01 to 2025-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 22K06181
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

Platform for Advanced Genome Science

2016-01-01 to 2021-12-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 16H06279
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

Multidimensional Exploration of Logics of Plant Development

2015-11-06 to 2018-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 15K21758
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

Evolutionary and molecuar genetic studies to logics in plant development

2013-06-28 to 2018-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 25113009
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

2010-04-01 to 2016-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 221S0002
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard
grade
Preferred source (of 2)‎

Comprehensive analysis of interactions between plants and microbes

2005-01-01 to 2009-12-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 17018041
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

Comprehensive analysis of characteristic sequence patterns among protein-coding regions

2005-01-01 to 2008-12-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
GRANT_NUMBER: 17310116
Source: Self-asserted source
Yasukazu Nakamura via DimensionsWizard

Works (50 of 181)

Items per page:
Page 1 of 4

A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa.

Scientific data
2025-02-04 | Journal article
Contributors: Fujiwara K; Atsushi Toyoda; Bhim B. Biswa; Takushi Kishida; Tsuruta M; Nakamura Y; Kimura N; Kawamoto S; Sato Y; Katsuki T et al.
Source: Self-asserted source
Yasukazu Nakamura

DFAST_QC: quality assessment and taxonomic identification tool for prokaryotic Genomes.

BMC bioinformatics
2025-01-07 | Journal article
Contributors: Elmanzalawi M; Fujisawa T; Mori H; Nakamura Y; Tanizawa Y
Source: Self-asserted source
Yasukazu Nakamura

Gene expression profiles associated with early relapse during first remission induction in canine multicentric high-grade B-cell lymphoma

Journal of Veterinary Medical Science
2024 | Journal article
EID:

2-s2.0-85181897841

Part of ISSN: 13477439 09167250
Contributors: Toyoda, H.; Tani, A.; Goto-Koshino, Y.; Motegi, T.; Sakamoto, M.; Mochizuki, T.; Harada, K.; Kobayashi, T.; Setoguchi, A.; Shizuta, Y. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Letter to the Editor: Genome Annotation Matters—From Genes to Phylogenetic Inferences

Plant and Cell Physiology
2024 | Journal article
EID:

2-s2.0-85185349056

Part of ISSN: 14719053 00320781
Contributors: Furumizu, C.; Tanizawa, Y.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Establishing a comprehensive web-based analysis platform for Nicotiana benthamiana genome and transcriptome.

The Plant journal : for cell and molecular biology
2024-12-03 | Journal article
Contributors: Ken-ichi Kurotani; Hirakawa H; Kenta Shirasawa; Tagiri K; Mori M; Ramadan A; Ichihashi Y; Suzuki T; Tanizawa Y; An J et al.
Source: Self-asserted source
Yasukazu Nakamura

A deletion at the X-linkedARHGAP36gene locus is associated with the orange coloration of tortoiseshell and calico cats

2024-11-21 | Preprint
Contributors: Hidehiro Toh; Wan Kin Au Yeung; Motoko Unoki; Yuki Matsumoto; Yuka Miki; Yumiko Matsumura; Yoshihiro Baba; Takashi Sado; Yasukazu Nakamura; Miho Matsuda et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan

DNA Research
2023 | Journal article
EID:

2-s2.0-85146364099

Part of ISSN: 17561663 13402838
Contributors: Tamura, K.; Sakamoto, M.; Tanizawa, Y.; Mochizuki, T.; Matsushita, S.; Kato, Y.; Ishikawa, T.; Okuhara, K.; Nakamura, Y.; Bono, H.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

A leaf-emanated signal orchestrates grain size and number in response to maternal resources

Plant Journal
2023 | Journal article
EID:

2-s2.0-85153229357

Part of ISSN: 1365313X 09607412
Contributors: Ta, K.N.; Shimizu-Sato, S.; Agata, A.; Yoshida, Y.; Taoka, K.-I.; Tsuji, H.; Akagi, T.; Tanizawa, Y.; Sano, R.; Nosaka-Takahashi, M. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

A practical assembly guideline for genomes with various levels of heterozygosity

Briefings in Bioinformatics
2023 | Journal article
EID:

2-s2.0-85174948615

Part of ISSN: 14774054 14675463
Contributors: Mochizuki, T.; Sakamoto, M.; Tanizawa, Y.; Nakayama, T.; Tanifuji, G.; Kamikawa, R.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Best Practices for Comprehensive Annotation of Neuropeptides of Gryllus bimaculatus

Insects
2023 | Journal article
EID:

2-s2.0-85148712979

Part of ISSN: 20754450
Contributors: Mochizuki, T.; Sakamoto, M.; Tanizawa, Y.; Seike, H.; Zhu, Z.; Zhou, Y.J.; Fukumura, K.; Nagata, S.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 3)‎

DNA Data Bank of Japan (DDBJ) update report 2022

Nucleic Acids Research
2023 | Journal article
EID:

2-s2.0-85145967982

Part of ISSN: 13624962 03051048
Contributors: Tanizawa, Y.; Fujisawa, T.; Kodama, Y.; Kosuge, T.; Mashima, J.; Tanjo, T.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms

Plant and Cell Physiology
2023 | Journal article
EID:

2-s2.0-85149169069

Part of ISSN: 14719053 00320781
Contributors: Kurotani, K.-I.; Hirakawa, H.; Shirasawa, K.; Tanizawa, Y.; Nakamura, Y.; Isobe, S.; Notaguchi, M.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Large-scale epidemiological study on feline autosomal dominant polycystic kidney disease and identification of novel PKD1 gene variants

Journal of Feline Medicine and Surgery
2023 | Journal article
EID:

2-s2.0-85166579878

Part of ISSN: 15322750 1098612X
Contributors: Shitamori, F.; Nonogaki, A.; Motegi, T.; Matsumoto, Y.; Sakamoto, M.; Tanizawa, Y.; Nakamura, Y.; Yonezawa, T.; Momoi, Y.; Maeda, S.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species

BMC Plant Biology
2023 | Journal article
EID:

2-s2.0-85168222957

Part of ISSN: 14712229
Contributors: Ichihara, H.; Yamada, M.; Kohara, M.; Hirakawa, H.; Ghelfi, A.; Tamura, T.; Nakaya, A.; Nakamura, Y.; Shirasawa, S.; Yamashita, S. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Plastomes of Garcinia mangostana L. and Comparative Analysis with Other Garcinia Species

Plants
2023 | Journal article
EID:

2-s2.0-85149149748

Part of ISSN: 22237747
Contributors: Wee, C.-C.; Nor Muhammad, N.A.; Subbiah, V.K.; Arita, M.; Nakamura, Y.; Goh, H.-H.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata

2023-10-27 | Other
Contributors: Takeshi Ara; Yuichi Kodama; Toshiaki Tokimatsu; Asami Fukuda; Takehide Kosuge; Jun Mashima; Tomoya Tanjo; Osamu Ogasawara; Takatomo Fujisawa; Yasukazu Nakamura et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida

Science Advances
2022 | Journal article
EID:

2-s2.0-85129129551

Part of ISSN: 23752548
Contributors: Kamikawa, R.; Mochizuki, T.; Sakamoto, M.; Tanizawa, Y.; Nakayama, T.; Onuma, R.; Cenci, U.; Moog, D.; Speak, S.; Sarkozi, K. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

MarpolBase Expression: A Web-Based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha

Plant and Cell Physiology
2022 | Journal article
EID:

2-s2.0-85142918917

Part of ISSN: 14719053 00320781
Contributors: Kawamura, S.; Romani, F.; Yagura, M.; Mochizuki, T.; Sakamoto, M.; Yamaoka, S.; Nishihama, R.; Nakamura, Y.; Yamato, K.T.; Bowman, J.L. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Mitochondrial genome of Garcinia mangostana L. variety Mesta

Scientific Reports
2022 | Journal article
EID:

2-s2.0-85131626954

Part of ISSN: 20452322
Contributors: Wee, C.-C.; Nor Muhammad, N.A.; Subbiah, V.K.; Arita, M.; Nakamura, Y.; Goh, H.-H.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Plant GARDEN: a portal website for accessing plant genome, DNA marker, and SNP information

Acta Horticulturae
2022 | Conference paper
EID:

2-s2.0-85130981384

Part of ISSN: 24066168 05677572
Contributors: Ichihara, H.; Hirakawa, H.; Ghelfi, A.; Kohara, M.; Yamada, M.; Tamura, T.; Nakaya, A.; Nakamura, Y.; Shirasawa, S.; Sugihara, E. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu pufferfish

Proceedings of the National Academy of Sciences of the United States of America
2022 | Journal article
EID:

2-s2.0-85131701309

Part of ISSN: 10916490 00278424
Contributors: Kabir, A.; Ieda, R.; Hosoya, S.; Fujikawa, D.; Atsumi, K.; Tajima, S.; Nozawa, A.; Koyama, T.; Hirase, S.; Nakamura, O. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204<sup>T</sup> and detailed analysis of secondary metabolite gene clusters

Harmful Algae
2021 | Journal article
EID:

2-s2.0-85097905945

Part of ISSN: 18781470 15689883
Contributors: Shimura, Y.; Fujisawa, T.; Hirose, Y.; Misawa, N.; Kanesaki, Y.; Nakamura, Y.; Kawachi, M.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Nature Communications
2021 | Journal article
EID:

2-s2.0-85107388625

Part of ISSN: 20411723
Contributors: Grapotte, M.; Saraswat, M.; Bessière, C.; Menichelli, C.; Ramilowski, J.A.; Severin, J.; Hayashizaki, Y.; Itoh, M.; Tagami, M.; Murata, M. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade

DNA Research
2021 | Journal article
EID:

2-s2.0-85121245688

Part of ISSN: 17561663 13402838
Contributors: Hirose, Y.; Ohtsubo, Y.; Misawa, N.; Yonekawa, C.; Nagao, N.; Shimura, Y.; Fujisawa, T.; Kanesaki, Y.; Katoh, H.; Katayama, M. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system

Current Biology
2021 | Journal article
EID:

2-s2.0-85121709434

Part of ISSN: 18790445 09609822
Contributors: Iwasaki, M.; Kajiwara, T.; Yasui, Y.; Yoshitake, Y.; Miyazaki, M.; Kawamura, S.; Suetsugu, N.; Nishihama, R.; Yamaoka, S.; Wanke, D. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

Rice
2021 | Journal article
EID:

2-s2.0-85102130895

Part of ISSN: 19398433 19398425
Contributors: Kajiya-Kanegae, H.; Ohyanagi, H.; Ebata, T.; Tanizawa, Y.; Onogi, A.; Sawada, Y.; Hirai, M.Y.; Wang, Z.-X.; Han, B.; Toyoda, A. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

Current Biology
2020 | Journal article
EID:

2-s2.0-85079523320

Part of ISBN:

18790445 09609822

Contributors: Montgomery, S.A.; Tanizawa, Y.; Galik, B.; Wang, N.; Ito, T.; Mochizuki, T.; Akimcheva, S.; Bowman, J.L.; Cognat, V.; Maréchal-Drouard, L. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Current status of the multinational Arabidopsis community

Plant Direct
2020 | Journal article
EID:

2-s2.0-85095770206

Part of ISSN: 24754455
Contributors: Parry, G.; Provart, N.J.; Brady, S.M.; Uzilday, B.; Adams, K.; Araújo, W.; Aubourg, S.; Baginsky, S.; Bakker, E.; Bärenfaller, K. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

DDBJ data analysis challenge: A machine learning competition to predict arabidopsis chromatin feature annotations from DNA sequences

Genes and Genetic Systems
2020 | Journal article
EID:

2-s2.0-85083731513

Part of ISBN:

18805779 13417568

Contributors: Kaminuma, E.; Baba, Y.; Mochizuki, M.; Matsumoto, H.; Ozaki, H.; Okayama, T.; Kato, T.; Oki, S.; Fujisawa, T.; Nakamura, Y. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Lactobacillus buchneri subsp. Silagei subsp. nov., isolated from rice grain silage

International Journal of Systematic and Evolutionary Microbiology
2020 | Journal article
EID:

2-s2.0-85085905606

Part of ISBN:

14665034 14665026

Contributors: Tanizawa, Y.; Kobayashi, H.; Nomura, M.; Sakamoto, M.; Arita, M.; Nakamura, Y.; Ohkuma, M.; Tohno, M.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Reclassification of clostridium diolis biebl and spröer 2003 as a later heterotypic synonym of clostridium beijerinckii donker 1926 (Approved lists 1980) emend. keis et al. 2001

International Journal of Systematic and Evolutionary Microbiology
2020 | Journal article
EID:

2-s2.0-85084991740

Part of ISBN:

14665034 14665026

Contributors: Kobayashi, H.; Tanizawa, Y.; Sakamoto, M.; Nakamura, Y.; Ohkuma, M.; Tohno, M.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs

PLoS ONE
2020 | Journal article
EID:

2-s2.0-85092021032

Part of ISSN: 19326203
Contributors: Udagawa, C.; Sasaki, Y.; Tanizawa, Y.; Suemizu, H.; Ohnishi, Y.; Nakamura, Y.; Tokino, T.; Zembutsu, H.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

A model for the domestication and diversification processes of modern citrus cultivars in Japan

Acta Horticulturae
2019 | Book
EID:

2-s2.0-85061149007

Part of ISBN:

24066168 05677572

Contributors: Shimizu, T.; Kitajima, A.; Nonaka, K.; Yoshioka, T.; Ohta, S.; Goto, S.; Kaminuma, E.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Generating publication-ready prokaryotic genome annotations with DFAST

Methods in Molecular Biology
2019 | Book chapter
EID:

2-s2.0-85065300061

Part of ISBN:

19406029 10643745

Contributors: Tanizawa, Y.; Fujisawa, T.; Arita, M.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Lactobacillus salitolerans sp. Nov., a novel lactic acid bacterium isolated from spent mushroom substrates

International Journal of Systematic and Evolutionary Microbiology
2019 | Journal article
EID:

2-s2.0-85064239909

Part of ISBN:

14665034 14665026

Contributors: Tohno, M.; Tanizawa, Y.; Kojima, Y.; Sakamoto, M.; Nakamura, Y.; Ohkuma, M.; Kobayashi, H.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. Coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains

Genome Research
2019 | Journal article
EID:

2-s2.0-85071788550

Part of ISBN:

15495469 10889051

Contributors: Arimizu, Y.; Kirino, Y.; Sato, M.P.; Uno, K.; Sato, T.; Gotoh, Y.; Auvray, F.; Brugere, H.; Oswald, E.; Mainil, J.G. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994

International Journal of Systematic and Evolutionary Microbiology
2019 | Journal article
EID:

2-s2.0-85061128754

Part of ISBN:

14665026

Contributors: Kobayashi, H.; Tanizawa, Y.; Sakamoto, M.; Nakamura, Y.; Ohkuma, M.; Tohno, M.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

DFAST: A flexible prokaryotic genome annotation pipeline for faster genome publication

Bioinformatics
2018 | Journal article
EID:

2-s2.0-85043458026

Part of ISBN:

14602059 13674803

Contributors: Tanizawa, Y.; Fujisawa, T.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

DNA Data Bank of Japan: 30th anniversary

Nucleic Acids Research
2018 | Journal article
EID:

2-s2.0-85040906645

Part of ISBN:

13624962 03051048

Contributors: Kodama, Y.; Mashima, J.; Kosuge, T.; Kaminuma, E.; Ogasawara, O.; Okubo, K.; Nakamura, Y.; Takagi, T.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Draft genome sequence of the nitrogen-fixing and hormogonia-inducing cyanobacterium Nostoc cycadae strain WK-1, isolated from the coralloid roots of Cycas revoluta

Genome Announcements
2018 | Journal article
EID:

2-s2.0-85042064669

Part of ISBN:

21698287

Contributors: Kanesaki, Y.; Hirose, M.; Hirose, Y.; Fujisawa, T.; Nakamura, Y.; Watanabe, S.; Matsunaga, S.; Uchida, H.; Murakami, A.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses

International Journal of Systematic and Evolutionary Microbiology
2018 | Journal article
EID:

2-s2.0-85055818102

Part of ISBN:

14665026

Contributors: Tanizawa, Y.; Tada, I.; Kobayashi, H.; Endo, A.; Maeno, S.; Toyoda, A.; Arita, M.; Nakamura, Y.; Sakamoto, M.; Ohkuma, M. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Plant and Cell Physiology's 2018 Database Issue and beyond

Plant and Cell Physiology
2018 | Journal article
EID:

2-s2.0-85055072860

Part of ISSN: 14719053 00320781
Contributors: Ohyanagi, H.; Nakamura, Y.; Yano, K.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation

Scientific Reports
2018 | Journal article
EID:

2-s2.0-85056107725

Part of ISBN:

20452322

Contributors: Kitazumi, A.; Pabuayon, I.C.M.; Ohyanagi, H.; Fujita, M.; Osti, B.; Shenton, M.R.; Kakei, Y.; Nakamura, Y.; Brar, D.S.; Kurata, N. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Complete genome sequence of a coastal cyanobacterium, synechococcus sp. strain NIES-970

Genome Announcements
2017 | Journal article
EID:

2-s2.0-85019125564

Part of ISBN:

21698287

Contributors: Shimura, Y.; Hirose, Y.; Misawa, N.; Wakazuki, S.; Fujisawa, T.; Nakamura, Y.; Kanesaki, Y.; Yamaguchi, H.; Kawachi, M.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

CyanoBase: A large-scale update on its 20th anniversary

Nucleic Acids Research
2017 | Journal article
EID:

2-s2.0-85016151941

Part of ISBN:

13624962 03051048

Contributors: Fujisawa, T.; Narikawa, R.; Maeda, S.-I.; Watanabe, S.; Kanesaki, Y.; Kobayashi, K.; Nomata, J.; Hanaoka, M.; Watanabe, M.; Ehira, S. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

DNA Data Bank of Japan

Nucleic Acids Research
2017 | Journal article
EID:

2-s2.0-85016121450

Part of ISBN:

13624962 03051048

Contributors: Mashima, J.; Kodama, Y.; Fujisawa, T.; Katayama, T.; Okuda, Y.; Kaminuma, E.; Ogasawara, O.; Okubo, K.; Nakamura, Y.; Takagi, T.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

DNApod: DNA polymorphism annotation database from next-generation sequence read archives

PLoS ONE
2017 | Journal article
EID:

2-s2.0-85014019159

Part of ISBN:

19326203

Contributors: Mochizuki, T.; Tanizawa, Y.; Fujisawa, T.; Ohta, T.; Nikoh, N.; Shimizu, T.; Toyoda, A.; Fujiyama, A.; Kurata, N.; Nagasaki, H. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Draft sequencing of the heterozygous diploid genome of satsuma (Citrus unshiu Marc.) using a hybrid assembly approach

Frontiers in Genetics
2017 | Journal article
EID:

2-s2.0-85037029589

Part of ISBN:

16648021

Contributors: Shimizu, T.; Tanizawa, Y.; Mochizuki, T.; Nagasaki, H.; Yoshioka, T.; Toyoda, A.; Fujiyama, A.; Kaminuma, E.; Nakamura, Y.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits

Scientific Reports
2017 | Journal article
EID:

2-s2.0-85022086719

Part of ISBN:

20452322

Contributors: Minamikawa, M.F.; Nonaka, K.; Kaminuma, E.; Kajiya-Kanegae, H.; Onogi, A.; Goto, S.; Yoshioka, T.; Imai, A.; Hamada, H.; Hayashi, T. et al.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier

Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri

Bioscience of Microbiota, Food and Health
2017 | Journal article
EID:

2-s2.0-85074179744

Part of ISBN:

21863342 21866953

Contributors: Tanizawa, Y.; Kobayashi, H.; Kaminuma, E.; Sakamoto, M.; Ohkuma, M.; Nakamura, Y.; Arita, M.; Tohno, M.
Source: Self-asserted source
Yasukazu Nakamura via Scopus - Elsevier
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