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Employment (1)

Pennsylvania State University: University Park, PA, US

2013-11-01 to present | Research Assistant (Biochemistry and Molecular Biology)
Employment
Source: Self-asserted source
John Chilton

Education and qualifications (1)

University of Minnesota: Minneapolis, Minnesota, US

2005-09-01 to 2008-01-01 | Masters of Science (Computer Science)
Education
Source: Self-asserted source
John Chilton

Works (19)

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

PLOS Pathogens
2020-08-13 | Journal article
DOI: 10.1371/journal.ppat.1008643
Contributors: Dannon Baker; Carolyn B. Coyne; Marius van den Beek; Daniel Blankenberg; Dave Bouvier; John Chilton; Nate Coraor; Frederik Coppens; Ignacio Eguinoa; Simon Gladman et al.
Source: check_circle
Crossref

Galaxy External Display Applications: closing a dataflow interoperability loop

Nature Methods
2020-02-20 | Journal article
DOI: 10.1038/s41592-019-0727-x
Contributors: Daniel Blankenberg; John Chilton; Nate Coraor
Source: check_circle
Crossref

Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.

Genome biology
2019-09 | Journal article
DOI: 10.1186/s13059-019-1794-0
PMID: 31506093
PMC: PMC6737594
Contributors: Ellrott K; Buchanan A; Creason A; Mason M; Schaffter T; Hoff B; Eddy J; Chilton JM; Yu T; Stuart JM et al.
Source: Self-asserted source
John Chilton via Europe PubMed Central

Galaxy External Display Applications: Closing a dataflow interoperability loop

2019-05-24 | Other
DOI: 10.1101/642280
Contributors: Daniel Blankenberg; John Chilton; Nate Coraor
Source: check_circle
Crossref

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

Nucleic acids research
2018-07 | Journal article
DOI: 10.1093/nar/gky379
PMID: 29790989
PMC: PMC6030816
Contributors: Afgan E; Baker D; Batut B; van den Beek M; Bouvier D; Cech M; Chilton J; Clements D; Coraor N; Grüning BA et al.
Source: Self-asserted source
John Chilton via Europe PubMed Central

Community-Driven Data Analysis Training for Biology.

Cell systems
2018-06 | Journal article
DOI: 10.1016/j.cels.2018.05.012
PMID: 29953864
PMC: PMC6296361
Contributors: Batut B; Hiltemann S; Bagnacani A; Baker D; Bhardwaj V; Blank C; Bretaudeau A; Brillet-Guéguen L; Čech M; Chilton J et al.
Source: Self-asserted source
John Chilton via Europe PubMed Central

Practical Computational Reproducibility in the Life Sciences.

Cell systems
2018-06 | Journal article
DOI: 10.1016/j.cels.2018.03.014
PMID: 29953862
PMC: PMC6263957
Contributors: Grüning B; Chilton J; Köster J; Dale R; Soranzo N; van den Beek M; Goecks J; Backofen R; Nekrutenko A; Taylor J
Source: Self-asserted source
John Chilton via Europe PubMed Central

Community-driven data analysis training for biology

2017-11-29 | Other
DOI: 10.1101/225680
Contributors: Bérénice Batut; Saskia Hiltemann; Andrea Bagnacani; Dannon Baker; Vivek Bhardwaj; Clemens Blank; Anthony Bretaudeau; Loraine Brillet-Guéguen; Martin Čech; John Chilton et al.
Source: check_circle
Crossref

Practical computational reproducibility in the life sciences

2017-10-10 | Preprint
DOI: 10.1101/200683
Contributors: Bjorn Gruning; John Chilton; Johannes Köster; Ryan Dale; Jeremy Goecks; Rolf Backofen; Anton Nekrutenko; James Taylor
Source: check_circle
Crossref

Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers

PLOS Computational Biology
2017-05-25 | Journal article
DOI: 10.1371/journal.pcbi.1005425
Contributors: Björn A. Grüning; Francis Ouellette; Eric Rasche; Boris Rebolledo-Jaramillo; Carl Eberhard; Torsten Houwaart; John Chilton; Nate Coraor; Rolf Backofen; James Taylor et al.
Source: check_circle
Crossref

Enhancing pre-defined workflows withad hocanalytics using Galaxy, Docker and Jupyter

2016-09-16 | Preprint
DOI: 10.1101/075457
Contributors: Björn A. Grüning; Eric Rasche; Boris Rebolledo-Jaramillo; Carl Eberhard; Torsten Houwaart; John Chilton; Nate Coraor; Rolf Backofen; James Taylor; Anton Nekrutenko
Source: check_circle
Crossref

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.

Nucleic acids research
2016-05 | Journal article
DOI: 10.1093/nar/gkw343
PMID: 27137889
PMC: PMC4987906
Contributors: Afgan E; Baker D; van den Beek M; Blankenberg D; Bouvier D; Čech M; Chilton J; Clements D; Coraor N; Eberhard C et al.
Source: Self-asserted source
John Chilton via Europe PubMed Central

NCBI BLAST+ integrated into Galaxy.

GigaScience
2015-08 | Journal article
DOI: 10.1186/s13742-015-0080-7
PMID: 26336600
PMC: PMC4557756
Contributors: Cock PJ; Chilton JM; Grüning B; Johnson JE; Soranzo N
Source: Self-asserted source
John Chilton via Europe PubMed Central

Multi-omic data analysis using Galaxy.

Nature biotechnology
2015-02 | Journal article
DOI: 10.1038/nbt.3134
PMID: 25658277
Contributors: Boekel J; Chilton JM; Cooke IR; Horvatovich PL; Jagtap PD; Käll L; Lehtiö J; Lukasse P; Moerland PD; Griffin TJ
Source: Self-asserted source
John Chilton via Europe PubMed Central

NCBI BLAST + integrated into Galaxy

2015-01-21 | Preprint
DOI: 10.1101/014043
Contributors: Peter J. A. Cock; John M. Chilton; Björn Grüning; James E. Johnson; Nicola Soranzo
Source: check_circle
Crossref

Community-driven development for computational biology at Sprints, Hackathons and Codefests.

BMC bioinformatics
2014-11 | Journal article
DOI: 10.1186/1471-2105-15-S14-S7
PMID: 25472764
PMC: PMC4255748
Contributors: Möller S; Afgan E; Banck M; Bonnal RJ; Booth T; Chilton J; Cock PJ; Gumbel M; Harris N; Holland R et al.
Source: Self-asserted source
John Chilton via Europe PubMed Central

Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory.

BMC research notes
2014-05 | Journal article
DOI: 10.1186/1756-0500-7-314
PMID: 24885806
PMC: PMC4036707
Contributors: Onsongo G; Erdmann J; Spears MD; Chilton J; Beckman KB; Hauge A; Yohe S; Schomaker M; Bower M; Silverstein KA et al.
Source: Self-asserted source
John Chilton via Europe PubMed Central

CLIA-certified next-generation sequencing analysis in the cloud.

BMC Proceedings
2012-10 | Journal article
DOI: 10.1186/1753-6561-6-S6-P54
PMC: PMC3467568
Contributors: Zhang Y; Erdmann J; Chilton J; Onsongo G; Bower M; Beckman K; Thyagarajan B; Silverstein K; Lamblin A
Source: Self-asserted source
John Chilton via Europe PubMed Central

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.

Proteomics
2012-06 | Journal article
DOI: 10.1002/pmic.201100097
PMID: 22623410
PMC: PMC3618284
Contributors: Jagtap P; Bandhakavi S; Higgins L; McGowan T; Sa R; Stone MD; Chilton J; Arriaga EA; Seymour SL; Griffin TJ
Source: Self-asserted source
John Chilton via Europe PubMed Central
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