Personal information

Websites & social links

http://web.iyte.edu.tr/~bilgekaracali/

Other IDs

ResearcherID: A-1347-2018

Keywords

Biomedical information processing, Statistical learning, Computational data analysis, Brain-machine interfacing

Countries

Türkiye

Activities

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Employment (6)

Izmir Institute of Technology: Izmir, TR

2013 to present | Professor (Electrical and Electronics Engineering)
Employment
Source: Self-asserted source
BILGE KARAÇALI

Izmir Institute of Technology: Izmir, TR

2008 to 2013 | Associate Professor (Electrical and Electronics Engineering)
Employment
Source: Self-asserted source
BILGE KARAÇALI

Drexel University: Philadelphia, PA, US

2005 to 2007 | Assistant Professor (research track) (School of Biomedical Engineering, Science and Health Systems)
Employment
Source: Self-asserted source
BILGE KARAÇALI

University of Pennsylvania: Philadelphia, PA, US

2002 to 2005 | Postdoctoral Research Fellow (Radiology)
Employment
Source: Self-asserted source
BILGE KARAÇALI

North Carolina State University: Raleigh, NC, US

1998 to 2002 | Research Assistant (Electrical and Computer Engineering)
Employment
Source: Self-asserted source
BILGE KARAÇALI

North Carolina State University: Raleigh, NC, US

1997 to 1998 | Teaching Assistant (Electrical and Computer Engineering)
Employment
Source: Self-asserted source
BILGE KARAÇALI

Education and qualifications (3)

North Carolina State University: Raleigh, NC, US

1999-12 to 2002-08 | PhD (Electrical and Computer Engineering)
Education
Source: Self-asserted source
BILGE KARAÇALI

North Carolina State University: Raleigh, NC, US

1997-08 to 1999-12 | MS (Electrical and Computer Engineering)
Education
Source: Self-asserted source
BILGE KARAÇALI

Bilkent University: Ankara, TR

1992-09 to 1997-06 | BS (Electrical end Electronics Engineering)
Education
Source: Self-asserted source
BILGE KARAÇALI

Funding (2)

Hierarchical Motif Vectors for Protein Alignment and Functional Classification

Source: Self-asserted source
BILGE KARAÇALI via DimensionsWizard

Elastic Alignment of Multimodality Medical Images using Information Theoretic Point Similarity Measures

Grant
TUBITAK (Ankara, TR)
GRANT_NUMBER:

108E249
Source: Self-asserted source
BILGE KARAÇALI

Works (34)

Brain Activity Characterization by Entropic Clustering of EEG Signals

2017 25th Signal Processing and Communications Applications Conference
2017 | Book chapter
WOSUID:

WOS:000413813100366
Contributors: Olcay, B. O.; Karacali, B.; Ozgoren, M.; Guducu, C.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

An efficient algorithm for large-scale quasi-supervised learning

Pattern Analysis and Applications
2016 | Journal article
DOI: 10.1007/s10044-014-0401-y
WOSUID:

WOS:000374172600002
Contributors: Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Annealing-based model-free expectation maximisation for multi-colour flow cytometry data clustering

International Journal of Data Mining and Bioinformatics
2016 | Journal article
DOI: 10.1504/ijdmb.2016.073365
WOSUID:

WOS:000366136100006
Contributors: Kokturk, B. E.; Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Imaginary Activity Recognition Using Inter-Channel Time Coherence Profiles in EEG Data

2016 24th Signal Processing and Communication Application Conference
2016 | Book
WOSUID:

WOS:000391250900318
Contributors: Olcay, B. O.; Ozgoren, M.; Karacali, B.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Taste dysfunction in multiple sclerosis

Journal of Neurology
2016 | Journal article
DOI: 10.1007/s00415-016-8030-6
WOSUID:

WOS:000373742600007
Contributors: Doty, R. L.; Tourbier, I. A.; Pham, D. L.; Cuzzocreo, J. L.; Udupa, J. K.; Karacali, B.; Beals, E.; Fabius, L.; Leon-Sarmiento, F. E.; Moonis, G. et al.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

A computational analysis of Turkish makam music based on a probabilistic characterization of segmented phrases

Journal of Mathematics and Music
2015 | Journal article
DOI: 10.1080/17459737.2014.927012
WOSUID:

WOS:000350965600001
Contributors: Bozkurt, B.; Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Automated Labeling of Cancer Textures in Larynx Histopathology Slides Using Quasi-supervised Learning

Analytical and Quantitative Cytology and Histology
2014 | Journal article
WOSUID:

WOS:000349428300002
Contributors: Onder, D.; Sarioglu, S.; Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Usul and Makam driven automatic melodic segmentation for Turkish music

Journal of New Music Research
2014 | Journal article
DOI: 10.1080/09298215.2014.924535
WOSUID:

WOS:000342325800002
Contributors: Bozkurt, B.; Karaosmanoglu, M. K.; Karacali, B.; Unal, E.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Automated labelling of cancer textures in colorectal histopathology slides using quasi-supervised learning

Micron
2013 | Journal article
DOI: 10.1016/j.micron.2013.01.003
WOSUID:

WOS:000316830900005
Contributors: Onder, D.; Sarioglu, S.; Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Automatic Identification of Highly Conserved Family Regions and Relationships in Genome Wide Datasets Including Remote Protein Sequences

Plos One
2013 | Journal article
DOI: 10.1371/journal.pone.0075458
WOSUID:

WOS:000326240100126
Contributors: Dogan, T.; Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Improved Quasi-Supervised Learning by Expectation-Maximization

2013 21st Signal Processing and Communications Applications Conference
2013 | Book chapter
WOSUID:

WOS:000325005300206
Contributors: Karacali, B.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Quasi-supervised Learning on DNA Regions in Colon Cancer Histology Slides

2013 21st Signal Processing and Communications Applications Conference
2013 | Book chapter
WOSUID:

WOS:000325005300150
Contributors: Kokturk, B. E.; Karacali, B.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Hierarchical Motif Vectors for Prediction of Functional Sites in Amino Acid Sequences Using Quasi-Supervised Learning

Ieee-Acm Transactions on Computational Biology and Bioinformatics
2012 | Journal article
DOI: 10.1109/tcbb.2012.68
WOSUID:

WOS:000307299200018
Contributors: Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

The prognostic value of proportion of tumor in layringeal squamous cell carcinoma

Virchows Archiv
2012 | Journal article
WOSUID:

WOS:000310364801062
Contributors: Sarioglu, S.; Unlu, M.; Cetinayak, O.; Onder, D.; Ecevit, C.; Akman, F. C.; Ikiz, A. O.; Ada, E.; Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Quasi-supervised learning for biomedical data analysis

Pattern Recognition
2010 | Journal article
DOI: 10.1016/j.patcog.2010.04.024
WOSUID:

WOS:000280006700041
Contributors: Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Automated Clustering Of Histology Slide Texture Using Co-Occurrence Based Grayscale Image Features and Manifold Learning

Biyomut: 2009 14th National Biomedical Engineering Meeting
2009 | Book
WOSUID:

WOS:000274345400094
Contributors: Onder, D.; Karacali, B.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Information theoretic deformable registration using local image information

International Journal of Computer Vision
2007 | Journal article
DOI: 10.1007/s11263-006-8704-0
WOSUID:

WOS:000244018000001
Contributors: Karacali, B.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets

Bmc Bioinformatics
2007 | Journal article
DOI: 10.1186/1471-2105-8-415
WOSUID:

WOS:000252549600001
Contributors: Gormley, M.; Dampier, W.; Ertel, A.; Karacali, B.; Tozeren, A.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Automated segmentation of white matter lesions in 3D brain MR images, using multivariate pattern classification

2006 3rd Ieee International Symposium on Biomedical Imaging: Macro to Nano, Vols 1-3
2006 | Book chapter
WOSUID:

WOS:000244446000078
Contributors: Lao, Z. Q.; Shen, D. G.; Jawad, A.; Karacali, B.; Liu, D. F.; Melhem, E. R.; Bryan, R. N.; Davatzikos, C.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Simulating deformations of MR brain images for validation of atlas-based segmentation and registration algorithms

Neuroimage
2006 | Journal article
DOI: 10.1016/j.neuroimage.2006.08.007
WOSUID:

WOS:000241759200005
Contributors: Xue, Z.; Shen, D. G.; Karacali, B.; Stern, J.; Rottenberg, D.; Davatzikos, C.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Simulation of tissue atrophy using a topology preserving transformation model

Ieee Transactions on Medical Imaging
2006 | Journal article
DOI: 10.1109/tmi.2006.873221
WOSUID:

WOS:000237214000012
Contributors: Karacali, B.; Davatzikos, C.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Statistical representation and simulation of high-dimensional deformations: Application to synthesizing brain deformations

Medical Image Computing and Computer-Assisted Intervention - Miccai 2005, Pt 2
2005 | Book chapter
WOSUID:

WOS:000233356900062
Contributors: Zhong, X.; Shen, D. G.; Karacali, B.; Davatzikos, C.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

A comparative analysis of structural risk minimization by support vector machines and nearest neighbor rule

Pattern Recognition Letters
2004 | Journal article
DOI: 10.1016/j.patrec.2003.09.002
WOSUID:

WOS:000187554800006
Contributors: Karacali, B.; Ramanath, R.; Snyder, W. E.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Estimating topology preserving and smooth displacement fields

Ieee Transactions on Medical Imaging
2004 | Journal article
DOI: 10.1109/tmi.2004.827963
WOSUID:

WOS:000222428100009
Contributors: Karacali, B.; Davatzikos, C.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Fully elastic multi-modality image registration using mutual information

2004 2nd Ieee International Symposium on Biomedical Imaging: Macro to Nano, Vols 1 and 2
2004 | Book
WOSUID:

WOS:000227671301104
Contributors: Karacali, B.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Morphological classification of brains via high-dimensional shape transformations and machine learning methods

Neuroimage
2004 | Journal article
DOI: 10.1016/j.neuroimage.2003.09.027
WOSUID:

WOS:000188597500005
Contributors: Lao, Z. Q.; Shen, D. G.; Xue, Z.; Karacali, B.; Resnick, S. M.; Davatzikos, C.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Morphological classification of medical images using nonlinear support vector machines

2004 2ND IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1 and 2
2004 | Book
WOSUID:

WOS:000227671300148
Contributors: Davatzikos, C.; Shen, D. G.; Lao, Z. Q.; Xue, Z.; Karacali, B.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Noise reduction in surface reconstruction from a given gradient field

International Journal of Computer Vision
2004 | Journal article
DOI: 10.1023/B:VISI.0000027788.50090.b6
WOSUID:

WOS:000221391600005
Contributors: Karacali, B.; Snyder, W.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Fast minimization of structural risk by nearest neighbor rule

Ieee Transactions on Neural Networks
2003 | Journal article
DOI: 10.1109/tnn.2002.804315
WOSUID:

WOS:000180862400012
Contributors: Karacali, B.; Krim, H.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Reconstructing discontinuous surfaces from a given gradient field using partial integrability

Computer Vision and Image Understanding
2003 | Journal article
DOI: 10.1016/s1077-3142(03)00095-x
WOSUID:

WOS:000186076700004
Contributors: Karacali, B.; Snyder, W.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Topology preservation and regularity in estimated deformation fields

Information Processing in Medical Imaging, Proceedings
2003 | Book chapter
WOSUID:

WOS:000185604900036
Contributors: Karacali, B.; Davatzikos, C.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Automatic target detection using multispectral imaging

31st Applied Imagery Pattern Recognition Workshop, Proceedings
2002 | Book
WOSUID:

WOS:000182079100008
Contributors: Karacali, B.; Snyder, W.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Partial integrability in surface reconstruction from a given gradient field

2002 International Conference on Image Processing, Vol Ii, Proceedings
2002 | Book
WOSUID:

WOS:000185284000132
Contributors: Karacali, B.; Snyder, W. E.; Ieee,
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Wavelet based methods in Global Positioning System signal tracking

Wavelet Applications Vii
2000 | Book chapter
DOI: 10.1117/12.381675
WOSUID:

WOS:000088256200011
Contributors: Karacali, B.; Krim, A. H.; Schick, I. C.
Source: Self-asserted source
BILGE KARAÇALI via ResearcherID

Peer review (1 review for 1 publication/grant)

Review activity for NeuroImage. (1)
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