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Employment (3)

Vanderbilt University: Nashville, Tennessee, US

2022 to present | Postdoc researcher (Data Science Institute)
Employment
Source: Self-asserted source
zhaoqian su

Albert Einstein College of Medicine: The Bronx, New York, US

2018-02 to 2022 | Postdoc research fellow (Systems & Computational Biology)
Employment
Source: Self-asserted source
zhaoqian su

New Jersey Institute of Technology: Newark, NJ, US

2017-01 to 2017-12 | Research Assistant (Physics)
Employment
Source: Self-asserted source
zhaoqian su

Education and qualifications (1)

New Jersey Institute of Technology: Newark, NJ, US

2012-09 to 2017-12 | PhD (Physics)
Education
Source: Self-asserted source
zhaoqian su

Funding (1)

Research Fellowship

2022 to 2023 | Grant
Data Science Institute, Vanderbilt University (Nashville , US)
Source: Self-asserted source
zhaoqian su

Research resources (1)

P120-Induced Conformational Changes of E-cadherin

Works (31)

Discovering new amyloid-like peptides using all-atom simulations and artificial intelligence

2025-02-14 | Preprint
Contributors: Xiaohan Kuang; Sharareh Jalali; Tasnima Rahman; Jadhy Michalowski; Caren Sheng-Wong; Jirasak Wong-Ekkabut; Zhaoqian Su; Cristiano L. Dias
Source: check_circle
Crossref

Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA0201

2024-11-21 | Preprint
Contributors: Shan Jiang; Zhaoqian Su; Nathaniel Bloodworth; Yunchao Liu; Cristina Martina; David G. Harrison; Jens Meiler
Source: check_circle
Crossref

SuperWater: Predicting Water Molecule Positions on Protein Structures by Generative AI

2024-11-20 | Preprint
Contributors: Xiaohan Kuang; Zhaoqian Su; Yunchao (Lance) Liu; Xiaobo Lin; Jesse Spencer-Smith; Tyler Derr; Yinghao Wu; Jens Meiler
Source: check_circle
Crossref

Protein-lipid interactions drive presynaptic assembly upstream of cell adhesion molecules

2023-11-17 | Preprint
Contributors: Elisa B. Frankel; Araven Tiroumalechetty; Parise S. Henry; Zhaoqian Su; Yinghao Wu; Peri T. Kurshan
Source: check_circle
Crossref

Understanding the functional role of membrane confinements in TNF-mediated signaling by multiscale simulations

Communications Biology
2022-03-11 | Journal article
Contributors: Zhaoqian Su; Kalyani Dhusia; Yinghao Wu
Source: check_circle
Crossref

EXCESP: A Structure-Based Online Database for Extracellular Interactome of Cell Surface Proteins in Humans

Journal of Proteome Research
2022-02-04 | Journal article
Contributors: Kalyani Dhusia; Carlos Madrid; Zhaoqian Su; Yinghao Wu
Source: check_circle
Crossref

Computational Assessment of Protein–Protein Binding Affinity by Reversely Engineering the Energetics in Protein Complexes

Genomics, Proteomics & Bioinformatics
2021-12-01 | Journal article
Contributors: Bo Wang; Zhaoqian Su; Yinghao Wu
Source: check_circle
Crossref

A structural-based machine learning method to classify binding affinities between TCR and peptide-MHC complexes

Molecular Immunology
2021-11 | Journal article
Contributors: Kalyani Dhusia; Zhaoqian Su; Yinghao Wu
Source: check_circle
Crossref

Coarse-grained simulations of phase separation driven by DNA and its sensor protein cGAS

Archives of Biochemistry and Biophysics
2021-10 | Journal article
Contributors: Zhaoqian Su; Kalyani Dhusia; Yinghao Wu
Source: check_circle
Crossref

Computational Simulation of Holin S105 in Membrane Bilayer and Its Dimerization Through a Helix-Turn-Helix Motif

The Journal of Membrane Biology
2021-08-29 | Journal article
Contributors: Brian Zhou; Yinghao Wu; Zhaoqian Su
Source: check_circle
Crossref

Methane Clathrate Formation is Catalyzed and Kinetically Inhibited by the Same Molecule: Two Facets of Methanol

The Journal of Physical Chemistry B
2021-04-29 | Journal article
Contributors: Zhaoqian Su; Saman Alavi; John A. Ripmeester; Gedaliah Wolosh; Cristiano L. Dias
Source: check_circle
Crossref

A computational study of co-inhibitory immune complex assembly at the interface between T cells and antigen presenting cells

PLOS Computational Biology
2021-03-08 | Journal article
Contributors: Zhaoqian Su; Guanghong Wei; Kalyani Dhusia; Yinghao Wu
Source: check_circle
Crossref

Understanding the impacts of cellular environments on ligand binding of membrane receptors by computational simulations

The Journal of Chemical Physics
2021-02-07 | Journal article
Contributors: Zhaoqian Su; Kalyani Dhusia; Yinghao Wu
Source: check_circle
Crossref

Understanding the Targeting Mechanisms of Multi-Specific Biologics in Immunotherapy with Multiscale Modeling

iScience
2020-12 | Journal article
Contributors: Zhaoqian Su; Bo Wang; Steven C. Almo; Yinghao Wu
Source: check_circle
Crossref

Understand the Functions of Scaffold Proteins in Cell Signaling by a Mesoscopic Simulation Method

Biophysical Journal
2020-11 | Journal article
Contributors: Zhaoqian Su; Kalyani Dhusia; Yinghao Wu
Source: check_circle
Crossref

Cadherin clusters stabilized by a combination of specific and nonspecific cis-interactions

eLife
2020-09-02 | Journal article
Contributors: Connor J Thompson; Zhaoqian Su; Vinh H Vu; Yinghao Wu; Deborah E Leckband; Daniel K Schwartz
Source: check_circle
Crossref

Understanding the Impacts of Conformational Dynamics on the Regulation of Protein–Protein Association by a Multiscale Simulation Method

Journal of Chemical Theory and Computation
2020-08-11 | Journal article
Contributors: Kalyani Dhusia; Zhaoqian Su; Yinghao Wu
Source: check_circle
Crossref

Using Coarse-Grained Simulations to Characterize the Mechanisms of Protein–Protein Association

Biomolecules
2020-07 | Journal article | Author
Contributors: Kalyani Dhusia; zhaoqian su; Yinghao Wu
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

Computational simulations of TNF receptor oligomerization on plasma membrane

Proteins: Structure, Function, and Bioinformatics
2020-05 | Journal article
Contributors: Zhaoqian Su; Yinghao Wu
Source: check_circle
Crossref

Cadherin Clusters Stabilized by a Combination of Specific and Nonspecific Cis-Interactions

2020-05-23 | Preprint
Contributors: Connor J. Thompson; Zhaoqian Su; Vinh H. Vu; Yinghao Wu; Deborah E. Leckband; Daniel K. Schwartz
Source: check_circle
Crossref

Multiscale simulation unravel the kinetic mechanisms of inflammasome assembly

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
2020-02 | Journal article
Part of ISSN: 0167-4889
Source: Self-asserted source
zhaoqian su

Computational studies of protein–protein dissociation by statistical potential and coarse-grained simulations: a case study on interactions between colicin E9 endonuclease and immunity proteins

Physical Chemistry Chemical Physics
2019 | Journal article
Contributors: Zhaoqian Su; Yinghao Wu
Source: check_circle
Crossref

Individual and combined effects of urea and trimethylamine N-oxide (TMAO) on protein structures

Journal of Molecular Liquids
2019-11 | Journal article
Part of ISSN: 0167-7322
Source: Self-asserted source
zhaoqian su

Thermodynamic Stability of Polar and Nonpolar Amyloid Fibrils

Journal of Chemical Theory and Computation
2019-06-11 | Journal article
Part of ISSN: 1549-9618
Part of ISSN: 1549-9626
Source: Self-asserted source
zhaoqian su

Effects of Trimethylamine-N-oxide (TMAO) on Hydrophobic and Charged Interactions

The Journal of Physical Chemistry B
2018-05-31 | Journal article
Part of ISSN: 1520-6106
Part of ISSN: 1520-5207
Source: Self-asserted source
zhaoqian su

Effects of Trimethylamine- N -oxide on the Conformation of Peptides and its Implications for Proteins

Physical Review Letters
2017-09-08 | Journal article
Part of ISSN: 0031-9007
Part of ISSN: 1079-7114
Source: Self-asserted source
zhaoqian su

Molecular interactions accounting for protein denaturation by urea

Journal of Molecular Liquids
2017-02 | Journal article
Part of ISSN: 0167-7322
Source: Self-asserted source
zhaoqian su

Thermodynamics of Aβ16-21dissociation from a fibril: Enthalpy, entropy, and volumetric properties

Proteins: Structure, Function, and Bioinformatics
2015-11 | Journal article
Part of ISSN: 0887-3585
Source: Self-asserted source
zhaoqian su

Driving β-Strands into Fibrils

The Journal of Physical Chemistry B
2014-09-18 | Journal article
Part of ISSN: 1520-6106
Part of ISSN: 1520-5207
Source: Self-asserted source
zhaoqian su

Steady state minority carrier lifetime and defect level occupation in thin film CdTe solar cells

Thin Solid Films
2014-05 | Journal article
Part of ISSN: 0040-6090
Source: Self-asserted source
zhaoqian su

Roles of urea and TMAO on the interaction between extended non-polar peptides

Conference abstract
Source: Self-asserted source
zhaoqian su

Peer review (3 reviews for 3 publications/grants)

Review activity for Biomolecules. (1)
Review activity for Cells. (1)
Review activity for International journal of molecular sciences. (1)