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Education and qualifications (1)

University of Calcutta: Kolkata, West Bengal, IN

2021-09-26 to present | Senior Research Fellow (Department of Biophysics, Molecular biology and Bioinformatics)
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Nivedita Dutta

Works (11)

Structural and Thermodynamic Consequences of Base Pairs Containing Pseudouridine and N1‐methylpseudouridine in RNA Duplexes

ChemistrySelect
2025-01 | Journal article
DOI: 10.1002/slct.202400006
Contributors: Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri
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Crossref

Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes

Physical Chemistry Chemical Physics
2024 | Journal article
DOI: 10.1039/D3CP02442C
Contributors: Nivedita Dutta; Joanna Sarzynska; Indrajit Deb; Ansuman Lahiri
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Crossref

The oligonucleotides containing N7-regioisomer of guanosine. Influence on thermodynamic properties and structure of RNA duplexes

RNA
2024-10-28 | Journal article
DOI: 10.1261/rna.080106.124
Part of ISSN: 1355-8382
Part of ISSN: 1469-9001
Contributors: Aleksandra Jarmolowicz; Nivedita Dutta; Witold Andralojc; Joanna Sarzynska; Grzegorz Framski; Daniel Baranowski; Jerzy Boryski; Ansuman Lahiri; Zofia Gdaniec; Elzbieta Kierzek et al.
Source: Self-asserted source
Nivedita Dutta

Structural and dynamic consequences of inosine, 2′-O-methylation, and N6-methyladenosine modifications in RNA G-quadruplex: A molecular dynamics study

2024-09-24 | Preprint
DOI: 10.1101/2024.09.20.614213
Contributors: Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri
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Crossref

Predicting nearest neighbor free energies of modified RNA with LIE: Results for pseudouridine and N1-methylpseudouridine within RNA duplexes

2023-08-17 | Preprint
DOI: 10.26434/chemrxiv-2023-zblrz-v5
Contributors: Nivedita Dutta; Joanna Sarzynska; Indrajit Deb; Ansuman Lahiri
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Crossref

Structural and thermodynamic consequences of base pairs containing pseudouridine and N1-methylpseudouridine in RNA duplexes

2023-03-22 | Preprint
DOI: 10.1101/2023.03.19.533340
Contributors: Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri
Source: Self-asserted source
Nivedita Dutta

Conformational preferences of inosine and its methyl derivatives: Comparison of the AMBER derived force field parameters and reparameterization of the glycosidic torsion parameters

2023-01-20 | Preprint
DOI: 10.21203/rs.3.rs-2486374/v1
Contributors: Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri
Source: Self-asserted source
Nivedita Dutta

Inosine and its methyl derivatives: Occurrence, biogenesis, and function in RNA

Progress in Biophysics and Molecular Biology
2022-03 | Journal article
DOI: 10.1016/j.pbiomolbio.2022.01.001
Contributors: Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri
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Crossref

Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives

Journal of Computer-Aided Molecular Design
2022-03-26 | Journal article
DOI: 10.1007/s10822-022-00447-4
Part of ISSN: 0920-654X
Part of ISSN: 1573-4951
Source: Self-asserted source
Nivedita Dutta
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Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space

Journal of Chemical Information and Modeling
2020-10-26 | Journal article
DOI: 10.1021/acs.jcim.0c00369
Part of ISSN: 1549-9596
Part of ISSN: 1549-960X
Source: Self-asserted source
Nivedita Dutta

Probing the functional conformations of an atypical proline-rich fusion peptide

Physical Chemistry Chemical Physics
2019 | Journal article
DOI: 10.1039/C9CP02216C
Contributors: Nivedita Dutta; Saikat Dutta Chowdhury; Ansuman Lahiri
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