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University of Hawaii John A. Burns School of Medicine: Honolulu, HI, US

2018-01-01 to present | Assistant Professor (Department of Quantitative Health Sciences)
Employment
Source: Self-asserted source
Vedbar Khadka

Works (50 of 60)

Items per page:
Page 1 of 2

Effects of Dietary Quality on Vaginal Microbiome Composition Throughout Pregnancy in a Multi-Ethnic Cohort

Nutrients
2024-10-08 | Journal article
Contributors: Corrie Miller; Kira Morikawa; Paula Benny; Jonathan Riel; Marie K. Fialkowski; Yujia Qin; Vedbar Khadka; Men-Jean Lee
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Crossref
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Temporal Investigation of the Maternal Origins of Fetal Gut Microbiota

Microorganisms
2024-09-09 | Journal article
Contributors: Corrie Miller; Kayti Luu; Brandi Mikami; Jonathan Riel; Yujia Qin; Vedbar Khadka; Men-Jean Lee
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Crossref
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Effects of Heat-Induced Oxidative Stress and Astaxanthin on the <i>NF-kB</i>, <i>NFE2L2</i> and <i>PPARα</i> Transcription Factors and Cytoprotective Capacity in the Thymus of Broilers

Current Issues in Molecular Biology
2024-08 | Journal article | Author
Contributors: Donna Lee Kuehu; Yuanyuan Fu; Masaki Nasu; Hua Yang; Vedbar Khadka; Youping Deng
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Multidisciplinary Digital Publishing Institute
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Use of Microalgae-Derived Astaxanthin to Improve Cytoprotective Capacity in the Ileum of Heat-Induced Oxidative Stressed Broilers

Animals
2024-06-29 | Journal article
Contributors: Donna Lee Kuehu; Yuanyuan Fu; Masaki Nasu; Hua Yang; Vedbar S. Khadka; Youping Deng
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Heat-Induced Oxidative Stress and Use of Astaxanthin on the NF-kB, NFE2L2 Transcription Factors and Cytoprotective Capacity in the Thymus of Broilers

2024-06-26 | Preprint
Contributors: Donna Lee Kuehu; Yuanyuan Fu; Masaki Nasu; Hua Yang; Vedbar S. Khadka; Youping Deng
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Heat-Induced Oxidative Stress and Use of Astaxanthin on the NF-kB, NFE2L2 Transcription Factors and Cytoprotective Capacity in the Thymus of Broilers

2024-06-05 | Preprint
Contributors: Donna Lee Kuehu; Yuanyuan Fu; Masaki Nasu; Hua Yang; Vedbar S. Khadka; Youping Deng
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Use of Microalgae-Derived Astaxanthin to Improve Cytoprotective Capacity in the Ileum of Heat-Induced Oxidative Stressed Broilers

2024-05-30 | Preprint
Contributors: Donna Lee Kuehu; Yuanyuan Fu; Masaki Nasu; Hua Yang; Vedbar S. Khadka; Youping Deng
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Crossref
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RSK1 and RSK2 serine/threonine kinases regulate different transcription programs in cancer

Frontiers in Cell and Developmental Biology
2023 | Journal article
EID:

2-s2.0-85146481079

Part of ISSN: 2296634X
Contributors: Yang, W.S.; Caliva, M.J.; Khadka, V.S.; Tiirikainen, M.; Matter, M.L.; Deng, Y.; Ramos, J.W.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Exploring Optimal Biomarker Sources: A Comparative Analysis of Exosomes and Whole Plasma in Fasting and Non-Fasting Conditions for Liquid Biopsy Applications

International Journal of Molecular Sciences
2023-12-27 | Journal article
Contributors: Masaki Nasu; Vedbar S. Khadka; Mayumi Jijiwa; Ken Kobayashi; Youping Deng
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sRNAfrag: A pipeline and suite of tools to analyze fragmentation in small RNA sequencing data

2023-08-21 | Preprint
Contributors: Ken Nakatsu; Mayumi Jijiwa; Vedbar Khadka; Masaki Nasu; Matthew Huo; Youping Deng
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Crossref

Single-cell RNA sequencing reveals characteristics of myeloid cells in pulmonary post-acute sequelae of SARS-CoV-2

2023-08-02 | Preprint
Contributors: Hyundong Yoon; Logan S. Dean; Boonyanudh Jiyarom; Vedbar Khadka; Youping Deng; Vivek R. Nerurukar; Dominic C. Chow; Cecilia M. Shikuma; Gehan Devendra; Youngil Koh et al.
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Crossref

Circulating microRNA Biomarker for Detecting Breast Cancer in High-Risk Benign Breast Tumors

International Journal of Molecular Sciences
2023-04-20 | Journal article
Contributors: Vedbar S. Khadka; Masaki Nasu; Youping Deng; Mayumi Jijiwa
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Crossref
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RNA-Sequencing based analysis of bovine endometrium during the maternal recognition of pregnancy

BMC Genomics
2022 | Journal article
EID:

2-s2.0-85133640561

Part of ISSN: 14712164
Contributors: Adhikari, B.; Lee, C.N.; Khadka, V.S.; Deng, Y.; Fukumoto, G.; Thorne, M.; Caires, K.; Odani, J.; Mishra, B.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Source of Liquid Biopsy Biomarker: Exosome vs Whole Plasma, Fasting vs Non-fasting

ResearchSquare
2022 | Other
EID:

2-s2.0-85146074960

Contributors: Nasu, M.; Khadka, V.; Jijiwa, M.; Kobayashi, K.; Deng, Y.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

T-cell activation decreases miRNA-15a/16 levels to promote MEK1–ERK1/2–Elk1 signaling and proliferative capacity

Journal of Biological Chemistry
2022-03 | Journal article
Contributors: Frank Urena; Chi Ma; FuKun W. Hoffmann; Lance G.A. Nunes; Johann Urschitz; Stefan Moisyadi; Vedbar S. Khadka; Youping Deng; Peter R. Hoffmann
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Crossref
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A global metagenomic map of urban microbiomes and antimicrobial resistance

Cell
2021 | Journal article
EID:

2-s2.0-85106902108

Part of ISSN: 10974172 00928674
Contributors: Danko, D.; Bezdan, D.; Afshin, E.E.; Ahsanuddin, S.; Bhattacharya, C.; Butler, D.J.; Chng, K.R.; Donnellan, D.; Hecht, J.; Jackson, K. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Adherence to Mediterranean diet impacts gastrointestinal microbial diversity throughout pregnancy

BMC Pregnancy and Childbirth
2021 | Journal article
EID:

2-s2.0-85112706467

Part of ISSN: 14712393
Contributors: Miller, C.B.; Benny, P.; Riel, J.; Boushey, C.; Perez, R.; Khadka, V.; Qin, Y.; Maunakea, A.K.; Lee, M.-J.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Dysregulated KRAS gene-signaling axis and abnormal chromatin remodeling drive therapeutic resistance in heterogeneous-sized circulating tumor cells in gastric cancer patients

Cancer Letters
2021 | Journal article
EID:

2-s2.0-85107923994

Part of ISSN: 18727980 03043835
Contributors: Chen, Y.; Li, Y.; Qi, C.; Zhang, C.; Liu, D.; Deng, Y.; Fu, Y.; Khadka, V.S.; Wang, D.D.; Tan, S. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Ischemic heart injury leads to HIF1-dependent differential splicing of CaMK2γ

Scientific Reports
2021 | Journal article
EID:

2-s2.0-85108814379

Part of ISSN: 20452322
Contributors: Williams, A.L.; Walton, C.B.; Pinell, B.; Khadka, V.S.; Dunn, B.; Lee, K.; Anagaran, M.C.T.; Avelar, A.; Shohet, R.V.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

JAMMIT Analysis defines 2 semi-independent immune processes common to 29 solid tumors authors

bioRxiv
2021 | Other
EID:

2-s2.0-85117804275

Part of ISSN: 26928205
Contributors: Zitello, E.; Vo, M.; Chen, S.; Bowler, S.; Khadka, V.; Wenska, T.; Hoffmann, P.; Okimoto, G.; Deng, Y.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

RNA sequencing-based analysis of the magnum tissues revealed the novel genes and biological pathways involved in the egg-white formation in the laying hen

BMC Genomics
2021 | Journal article
EID:

2-s2.0-85105196010

Part of ISSN: 14712164
Contributors: Sah, N.; Kuehu, D.L.; Khadka, V.S.; Deng, Y.; Jha, R.; Wasti, S.; Mishra, B.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Selenoprotein M Promotes Hypothalamic Leptin Signaling and Thioredoxin Antioxidant Activity

Antioxidants and Redox Signaling
2021 | Journal article
EID:

2-s2.0-85115155111

Part of ISSN: 15577716 15230864
Contributors: Gong, T.; Hashimoto, A.C.; Sasuclark, A.R.; Khadka, V.S.; Gurary, A.; Pitts, M.W.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

The miRNA Profile of Inflammatory Colorectal Tumors Identify TGF-β as a Companion Target for Checkpoint Blockade Immunotherapy

Frontiers in Cell and Developmental Biology
2021 | Journal article
EID:

2-s2.0-85118302234

Part of ISSN: 2296634X
Contributors: Bartlett, B.; Gao, Z.; Schukking, M.; Menor, M.; Khadka, V.S.; Fabbri, M.; Fei, P.; Deng, Y.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Upregulated ethanolamine phospholipid synthesis via selenoprotein I is required for effective metabolic reprogramming during T cell activation

Molecular Metabolism
2021 | Journal article
EID:

2-s2.0-85100613911

Part of ISSN: 22128778
Contributors: Ma, C.; Hoffmann, F.W.; Marciel, M.P.; Page, K.E.; Williams-Aduja, M.A.; Akana, E.N.L.; Gojanovich, G.S.; Gerschenson, M.; Urschitz, J.; Moisyadi, S. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Bacterial Diversity Correlates with Overall Survival in Cancers of the Head and Neck, Liver, and Stomach

Molecules
2021-09-17 | Journal article
Contributors: Rebecca M. Rodriguez; Mark Menor; Brenda Y. Hernandez; Youping Deng; Vedbar S. Khadka
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Adaptive Thermogenesis in a Mouse Model Lacking Selenoprotein Biosynthesis in Brown Adipocytes

International Journal of Molecular Sciences
2021-01-09 | Journal article
Contributors: Lucia A. Seale; Ashley N. Ogawa-Wong; Ligia M. Watanabe; Vedbar S. Khadka; Mark Menor; Daniel J. Torres; Bradley A. Carlson; Dolph L. Hatfield; Marla J. Berry
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Crossref
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Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade

AIDS (London, England)
2020 | Journal article
EID:

2-s2.0-85088158421

Part of ISSN: 14735571
Contributors: SahBandar, I.N.; Chew, G.M.; Corley, M.J.; Pang, A.P.S.; Tsai, N.; Hanks, N.; Khadka, V.S.; Klatt, N.R.; Hensley-McBain, T.; Somsouk, M. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Development of a RNA-Seq based prognostic signature for colon cancer

International Journal of Computational Biology and Drug Design
2020 | Journal article
EID:

2-s2.0-85103565432

Part of ISSN: 17560764 17560756
Contributors: Bartlett, B.; Zhu, Y.; Menor, M.; Khadka, V.S.; Zhang, J.; Zheng, J.; Jiang, B.; Deng, Y.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Disabled homolog 2 (DAB2) protein in tumor microenvironment correlates with aggressive phenotype in human urothelial carcinoma of the bladder

Diagnostics
2020 | Journal article
EID:

2-s2.0-85078481815

Part of ISSN: 20754418
Contributors: Itami, Y.; Miyake, M.; Ohnishi, S.; Tatsumi, Y.; Gotoh, D.; Hori, S.; Morizawa, Y.; Iida, K.; Ohnishi, K.; Nakai, Y. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Identification of lncRNA biomarkers for lung cancer through integrative cross-platform data analyses

Aging
2020 | Journal article
EID:

2-s2.0-85088841738

Part of ISSN: 19454589
Contributors: Zhao, T.; Khadka, V.S.; Deng, Y.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Mir-125 family regulates xirp1 and fih in response to myocardial infarction

Physiological Genomics
2020 | Journal article
EID:

2-s2.0-85089667876

Part of ISSN: 15312267 10948341
Contributors: Williams, A.L.; Khadka, V.S.; Anagaran, M.C.T.; Lee, K.; Avelar, A.; Deng, Y.; Shohet, R.V.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing

Computational and Structural Biotechnology Journal
2020 | Journal article
EID:

2-s2.0-85082091269

Part of ISSN: 20010370
Contributors: Rodriguez, R.M.; Hernandez, B.Y.; Menor, M.; Deng, Y.; Khadka, V.S.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Tissue-associated microbial detection in cancer using human sequencing data

BMC Bioinformatics
2020-12 | Journal article
Contributors: Rebecca M. Rodriguez; Vedbar S. Khadka; Mark Menor; Brenda Y. Hernandez; Youping Deng
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Crossref
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Cell-type specific analysis of selenium-related genes in brain

Antioxidants
2019 | Journal article
EID:

2-s2.0-85067070460

Part of ISSN: 20763921
Contributors: Sasuclark, A.R.; Khadka, V.S.; Pitts, M.W.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Combined omics reveals that disruption of the selenocysteine lyase gene affects amino acid pathways in mice

Nutrients
2019 | Journal article
EID:

2-s2.0-85074284330

Part of ISSN: 20726643
Contributors: Seale, L.A.; Khadka, V.S.; Menor, M.; Xie, G.; Watanabe, L.M.; Sasuclark, A.; Guirguis, K.; Ha, H.Y.; Hashimoto, A.C.; Peplowska, K. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Comparative DNA methylomic analyses reveal potential origins of novel epigenetic biomarkers of insulin resistance in monocytes from virally suppressed HIV-infected adults

Clinical Epigenetics
2019 | Journal article
EID:

2-s2.0-85068191433

Part of ISSN: 18687083 18687075
Contributors: Dye, C.K.; Corley, M.J.; Li, D.; Khadka, V.S.; Mitchell, B.I.; Sultana, R.; Lum-Jones, A.; Shikuma, C.M.; Ndhlovu, L.C.; Maunakea, A.K.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Development of a miRNA-seq based prognostic signature in lung adenocarcinoma

BMC Cancer
2019 | Journal article
EID:

2-s2.0-85059796137

Part of ISSN: 14712407
Contributors: Siriwardhana, C.; Khadka, V.S.; Chen, J.J.; Deng, Y.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Epigenetic Delay in the Neurodevelopmental Trajectory of DNA Methylation States in Autism Spectrum Disorders

Frontiers in Genetics
2019 | Journal article
EID:

2-s2.0-85073672423

Part of ISSN: 16648021
Contributors: Corley, M.J.; Vargas-Maya, N.; Pang, A.P.S.; Lum-Jones, A.; Li, D.; Khadka, V.; Sultana, R.; Blanchard, D.C.; Maunakea, A.K.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Juvenile Shank3b deficient mice present with behavioral phenotype relevant to autism spectrum disorder

Behavioural Brain Research
2019 | Journal article
EID:

2-s2.0-85052441212

Part of ISSN: 18727549 01664328
Contributors: Balaan, C.; Corley, M.J.; Eulalio, T.; Leite-ahyo, K.; Pang, A.P.S.; Fang, R.; Khadka, V.S.; Maunakea, A.K.; Ward, M.A.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Lower Interferon Regulatory Factor-8 Expression in Peripheral Myeloid Cells Tracks With Adverse Central Nervous System Outcomes in Treated HIV Infection

Frontiers in Immunology
2019 | Journal article
EID:

2-s2.0-85076863761

Part of ISSN: 16643224
Contributors: D'Antoni, M.L.; Kallianpur, K.J.; Premeaux, T.A.; Corley, M.J.; Fujita, T.; Laws, E.I.; Ogata-Arakaki, D.; Chow, D.C.; Khadka, V.S.; Shikuma, C.M. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Multi-antigen vaccination with simultaneous engagement of the OX40 receptor delays malignant mesothelioma growth and increases survival in animal models

Frontiers in Oncology
2019 | Journal article
EID:

2-s2.0-85071671354

Part of ISSN: 2234943X
Contributors: Hoffmann, P.R.; Hoffmann, F.W.; Premeaux, T.A.; Fujita, T.; Soprana, E.; Panigada, M.; Chew, G.M.; Richard, G.; Hindocha, P.; Menor, M. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Plasma microRNA pair panels as novel biomarkers for detection of early stage breast cancer

Frontiers in Physiology
2019 | Journal article
EID:

2-s2.0-85065480030

Part of ISSN: 1664042X
Contributors: Fang, R.; Zhu, Y.; Hu, L.; Khadka, V.S.; Ai, J.; Zou, H.; Ju, D.; Jiang, B.; Deng, Y.; Hu, X.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Ratio-Based Method to Identify True Biomarkers by Normalizing Circulating ncRNA Sequencing and Quantitative PCR Data

Analytical Chemistry
2019 | Journal article
EID:

2-s2.0-85065872901

Part of ISSN: 15206882 00032700
Contributors: Deng, Y.; Zhu, Y.; Wang, H.; Khadka, V.S.; Hu, L.; Ai, J.; Dou, Y.; Li, Y.; Dai, S.; Mason, C.E. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

BMC Plant Biology
2019 | Journal article
EID:

2-s2.0-85061494793

Part of ISSN: 14712229
Contributors: Khadka, V.S.; Vaughn, K.; Xie, J.; Swaminathan, P.; Ma, Q.; Cramer, G.R.; Fennell, A.Y.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Absence of hybridization with the wild-type and mutant rpoB probes in the Genotype MTBDRplus assay detects ‘disputed’ rifampicin mutations

Clinical Microbiology and Infection
2018 | Journal article
EID:

2-s2.0-85040321480

Part of ISSN: 14690691 1198743X
Contributors: Abanda, N.N.; Djieugoué, J.Y.; Khadka, V.S.; Pefura-Yone, E.W.; Mbacham, W.F.; Vernet, G.; Penlap, V.M.; Deng, Y.; Eyangoh, S.I.; Taylor, D.W. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Correction: Selenoprotein K deficiency inhibits melanoma by reducing calcium flux required for tumor growth and metastasis [Oncotarget, 9, (2018) (13407-13422)] DOI: 10.18632/oncotarget.24388

Oncotarget
2018 | Journal article
EID:

2-s2.0-85050220858

Part of ISSN: 19492553
Contributors: Marciel, M.P.; Khadka, V.S.; Deng, Y.; Kilicaslan, P.; Pham, A.; Bertino, P.; Lee, K.; Chen, S.; Glibetic, N.; Hoffmann, F.W. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

HIF1 mediates a switch in pyruvate kinase isoforms after myocardial infarction

Physiological Genomics
2018 | Journal article
EID:

2-s2.0-85051645511

Part of ISSN: 15312267 10948341
Contributors: Williams, A.L.; Khadka, V.; Tang, M.; Avelar, A.; Schunke, K.J.; Menor, M.; Shohet, R.V.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Normalization of soluble CD163 levels after institution of antiretroviral therapy during acute HIV infection tracks with fewer neurological abnormalities

Journal of Infectious Diseases
2018 | Journal article
EID:

2-s2.0-85057561913

Part of ISSN: 15376613 00221899
Contributors: D'Antoni, M.L.; Byron, M.M.; Chan, P.; Sailasuta, N.; Sacdalan, C.; Sithinamsuwan, P.; Tipsuk, S.; Pinyakorn, S.; Kroon, E.; Slike, B.M. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

RNA sequencing-based analysis of the laying hen uterus revealed the novel genes and biological pathways involved in the eggshell biomineralization

Scientific Reports
2018 | Journal article
EID:

2-s2.0-85056644113

Part of ISSN: 20452322
Contributors: Sah, N.; Kuehu, D.L.; Khadka, V.S.; Deng, Y.; Peplowska, K.; Jha, R.; Mishra, B.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier

Selenoprotein K deficiency inhibits melanoma by reducing calcium flux required for tumor growth and metastasis

Oncotarget
2018 | Journal article
EID:

2-s2.0-85042704215

Part of ISSN: 19492553
Contributors: Marciel, M.P.; Khadka, V.S.; Deng, Y.; Kilicaslan, P.; Pham, A.; Bertino, P.; Lee, K.; Chen, S.; Glibetic, N.; Hoffmann, F.W. et al.
Source: Self-asserted source
Vedbar Khadka via Scopus - Elsevier
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